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bgcolor="#88bbee"><font color="#000000">Module: interactors</font>
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<p>here reside functions that implement a glue between application or paper
(main.py or paper.py) and the dialogs (dialogs.py)</p>
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<a name="Functions">Functions</a>
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<font color="#000000"> </font>
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<a href="#ask_display_form_for_selected">ask_display_form_for_selected</a><br>
<a href="#ask_id_for_selected">ask_id_for_selected</a><br>
<a href="#ask_inchi_program_path">ask_inchi_program_path</a><br>
<a href="#ask_name_for_selected">ask_name_for_selected</a><br>
<a href="#atoms_to_linear_fragment">atoms_to_linear_fragment</a><br>
<a href="#check_validity">check_validity</a><br>
<a href="#compute_oxidation_number">compute_oxidation_number</a><br>
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<a href="#convert_selected_to_linear_fragment">convert_selected_to_linear_fragment</a><br>
<a href="#create_fragment_from_selected">create_fragment_from_selected</a><br>
<a href="#log_atom_type">log_atom_type</a><br>
<a href="#save_as_template">save_as_template</a><br>
<a href="#select_language">select_language</a><br>
<a href="#set_atom_number">set_atom_number</a><br>
<a href="#view_fragments">view_fragments</a><br>
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<a name="ask_display_form_for_selected"></a>
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<font color="#000000">ask_display_form_for_selected </font>
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<font color="#000088"><pre>
ask_display_form_for_selected ( paper )
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<a name="ask_id_for_selected"></a>
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<font color="#000000">ask_id_for_selected </font>
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<font color="#000088"><pre>
ask_id_for_selected ( paper )
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<p>opens dialog for input of molecule ID and sets it</p>
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<a name="ask_inchi_program_path"></a>
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<font color="#000000">ask_inchi_program_path </font>
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<font color="#000088"><pre>
ask_inchi_program_path ()
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<a name="ask_name_for_selected"></a>
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<font color="#000000">ask_name_for_selected </font>
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<font color="#000088"><pre>
ask_name_for_selected ( paper )
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<p>opens dialog for input of molecule name and sets it</p>
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<a name="atoms_to_linear_fragment"></a>
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<font color="#000000">atoms_to_linear_fragment </font>
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<font color="#000088"><pre>
atoms_to_linear_fragment (
mol,
vs,
bond_length=10,
)
</pre></font>
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<a name="Exceptions">Exceptions</a>
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ValueError, "the vertices do not define connected subgraph"<br>
excs.bkchem_graph_error("circular_selection", _( "The selected part of a molecule is a whole ring, there is no way to linearize it" ) )<br>
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<a name="check_validity"></a>
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<font color="#000000">check_validity </font>
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<font color="#000088"><pre>
check_validity ( mols )
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<a name="compute_oxidation_number"></a>
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<font color="#000000">compute_oxidation_number </font>
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<font color="#000088"><pre>
compute_oxidation_number ( paper )
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<a name="convert_selected_to_linear_fragment"></a>
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<font color="#000000">convert_selected_to_linear_fragment </font>
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<font color="#000088"><pre>
convert_selected_to_linear_fragment ( paper )
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<a name="create_fragment_from_selected"></a>
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<font color="#000000">create_fragment_from_selected </font>
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<font color="#000088"><pre>
create_fragment_from_selected ( paper )
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<a name="log_atom_type"></a>
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<font color="#000000">log_atom_type </font>
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<font color="#000088"><pre>
log_atom_type ( vtype )
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<p>according to vtype tells the user how an atom text was interpreted</p>
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<a name="save_as_template"></a>
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<font color="#000000">save_as_template </font>
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<font color="#000088"><pre>
save_as_template ( paper )
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<a name="select_language"></a>
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<font color="#000000">select_language </font>
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<font color="#000088"><pre>
select_language ( paper )
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<a name="set_atom_number"></a>
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<font color="#000000">set_atom_number </font>
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<font color="#000088"><pre>
set_atom_number ( atoms )
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<a name="view_fragments"></a>
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<font color="#000000">view_fragments </font>
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<font color="#000088"><pre>
view_fragments ( paper )
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