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bgcolor="#88bbee"><font color="#000000">Class: coords_generator</font>
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<th bgcolor="#88bbee"
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<a name="Methods">Methods</a>
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<a href="#__init__">__init__</a><br>
<a href="#apply_gen_to_atoms">apply_gen_to_atoms</a><br>
<a href="#calculate_coords">calculate_coords</a><br>
<a href="#process_all_anelated_rings">process_all_anelated_rings</a><br>
<a href="#process_atom_neigbors">process_atom_neigbors</a><br>
<a href="#process_one_anelated_ring">process_one_anelated_ring</a><br>
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<font color="#000000">__init__ </font>
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<font color="#000088"><pre>
__init__ ( self, bond_length=1 )
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<a name="apply_gen_to_atoms"></a>
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<font color="#000000">apply_gen_to_atoms </font>
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<font color="#000088"><pre>
apply_gen_to_atoms (
self,
gen,
atoms,
start,
bond_length=None,
)
</pre></font>
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<a name="calculate_coords"></a>
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<font color="#000000">calculate_coords </font>
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<font color="#000088"><pre>
calculate_coords (
self,
mol,
bond_length=0,
force=0,
)
</pre></font>
<p>the bond_length (when given) sets the self.bond_length,
if bond_length == -1 we suppose that there is already part of the molecule containing
coords and we calculate the bond_length from it;
force says if we should recalc all coords</p>
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<a name="process_all_anelated_rings"></a>
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<font color="#000000">process_all_anelated_rings </font>
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<font color="#000088"><pre>
process_all_anelated_rings ( self, base )
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<a name="process_atom_neigbors"></a>
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<font color="#000000">process_atom_neigbors </font>
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<font color="#000088"><pre>
process_atom_neigbors ( self, v )
</pre></font>
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<a name="process_one_anelated_ring"></a>
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<font color="#000000">process_one_anelated_ring </font>
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<font color="#000088"><pre>
process_one_anelated_ring ( self, base )
</pre></font>
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