<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN"
"http://www.w3.org/TR/html40/loose.dtd">
<html>
<head>
<title>Class: gtml_importer</title>
</head>
<body bgcolor="#ffffff">
<p><i><a href="../../../index.html">Table of Contents</a></i></p>
<table border="0" cellpadding="5" cellspacing="0" width="100%">
<tr>
<th rowspan="2"
valign="top"
align="left"
width="10%"
bgcolor="#88bbee"><font color="#000000">Class: gtml_importer</font>
</th>
<th bgcolor="#88bbee"
width="90%"
align="right"><font color="#000000">../bkchem/plugins/gtml.py</font>
</th>
</tr>
<tr>
<td>
<table border="0" cellpadding="5" cellspacing="0" width="100%">
<tr>
<th bgcolor="#99ccff"
rowspan="2"
valign="top"
align="left"
width="20%"
>
<font color="#000000">
<a name="Methods">Methods</a>
</font>
</th>
<th bgcolor="#99ccff"
valign="top"
align="left"
width="80%"
>
<font color="#000000"> </font>
</th>
</tr>
<tr>
<td>
<a href="#__init__">__init__</a><br>
<a href="#get_molecules">get_molecules</a><br>
<a href="#on_begin">on_begin</a><br>
<a href="#place_molecules">place_molecules</a><br>
<a href="#process_reactions">process_reactions</a><br>
<tr>
<th bgcolor="#99ccff"
rowspan="2"
valign="top"
align="left"
width="20%"
>
<font color="#000000">
<a name="__init__"></a>
</font>
</th>
<th bgcolor="#99ccff"
valign="top"
align="left"
width="80%"
>
<font color="#000000">__init__ </font>
</th>
</tr>
<tr>
<td>
<font color="#000088"><pre>
__init__ ( self, paper )
</pre></font>
<tr>
<th bgcolor="#99ccff"
rowspan="2"
valign="top"
align="left"
width="20%"
>
<font color="#000000">
<a name="get_molecules"></a>
</font>
</th>
<th bgcolor="#99ccff"
valign="top"
align="left"
width="80%"
>
<font color="#000000">get_molecules </font>
</th>
</tr>
<tr>
<td>
<font color="#000088"><pre>
get_molecules ( self, file_name )
</pre></font>
<tr>
<th bgcolor="#99ccff"
rowspan="2"
valign="top"
align="left"
width="20%"
>
<font color="#000000">
<a name="on_begin"></a>
</font>
</th>
<th bgcolor="#99ccff"
valign="top"
align="left"
width="80%"
>
<font color="#000000">on_begin </font>
</th>
</tr>
<tr>
<td>
<font color="#000088"><pre>
on_begin ( self )
</pre></font>
<p>this method is called before every import</p>
<tr>
<th bgcolor="#99ccff"
rowspan="2"
valign="top"
align="left"
width="20%"
>
<font color="#000000">
<a name="place_molecules"></a>
</font>
</th>
<th bgcolor="#99ccff"
valign="top"
align="left"
width="80%"
>
<font color="#000000">place_molecules </font>
</th>
</tr>
<tr>
<td>
<font color="#000088"><pre>
place_molecules ( self )
</pre></font>
<tr>
<th bgcolor="#99ccff"
rowspan="2"
valign="top"
align="left"
width="20%"
>
<font color="#000000">
<a name="process_reactions"></a>
</font>
</th>
<th bgcolor="#99ccff"
valign="top"
align="left"
width="80%"
>
<font color="#000000">process_reactions </font>
</th>
</tr>
<tr>
<td>
<font color="#000088"><pre>
process_reactions ( self, doc )
</pre></font>
</td></tr>
</td></tr>
</table>
</td>
</tr>
</table>
<hr>
<p><i><a href="../../../index.html">Table of Contents</a></i></p>
<font size="-2"><i>This document was automatically generated
on Tue Dec 12 13:46:48 2006 by
<a href="http://happydoc.sourceforge.net">HappyDoc</a> version
2.1</i></font>
</body>
</html>
