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towhee-doc-7.0.1-1.fc14.noarch.rpm

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  <title>MCCCS Towhee (SMMK Note added in proof)</title>
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      <div align="center"> <font size="5"> <b><font face="Arial, Helvetica, sans-serif"><a name="top"></a>MCCCS 
        Towhee (SMMK Note added in proof)</font></b> </font> </div>
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      <p>&nbsp; </p>
      <p>&nbsp;</p>
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    <td width="697" valign="top"> <b>Overview</b> 
      <ul>
        This section covers the Siepmann-Martin-Mundy-Klein (SMMK) force field for branched alkanes as it is implemented 
	into the towhee_ff_SMMKnaip file in the ForceFields directory. All of the Towhee atom types for this force field 
        are listed, along with a short description of their meanings.
        SMMKnaip uses a 'Lennard-Jones' classical_potential and the 'Lorentz-Berthelot' classical_mixrule.
	The SMMKnaip force field was originally used with a 14.0 Angstrom cutoff and tail corrections.
	The SMMKnaip forcefield is an improvement upon the <a href="smmkmain.html">SMMK Main</a> force field 
	whose parameters were listed in the main text of the same paper.  SMMKnaip was a predecessor of 
	the <a href="trappeua.html">TraPPE-UA</a> force field.
        Any discrepencies (especially typos) from the published force field values are the sole 
        responsibility of Marcus G. Martin, and I welcome feedback on how this 
        implementation compares with other programs. 
      </ul>

      <b>References for SMMK Note added in proof</b> 
      <ul>
        The parameters and detailed results for the SMMK Note added in proof force field are found in the 
	note added in proof of the following paper.
        <ul>
          <li><a href="../references.html#siepmann_et_al_1997">Siepmann <i>et al.</i> 1997</a></li>
        </ul>
	The angle and torsion terms for this force field are taken from the following paper.
        <ul>
          <li><a href="../references.html#mundy_et_al_1996">Mundy <i>et al.</i> 1996</li>
        </ul>
	Note that unlike the <a href="smmkmain.html">SMMK Main</a> implementation, this forcefield uses
	rigid bond lengths.
      </ul>
      <b>SMMK Note added in proof in Towhee</b> 
      <ul>
        The official force field name for SMMK Note added in proof in Towhee is 'SMMKnaip'. Here 
        I list all of the atom names for use in the towhee_input file, 
        along with a brief description.
	Please note that the capitalization and spacing pattern is important and must be followed exactly 
	as listed here. 
        <ul>
          <li><b>'CH3'</b> methyl group (C plus 3 bonded H as a united-atom).</li>
          <li><b>'CH2'</b> methylene group (C plus 2 bonded H as a united-atom).</li>
          <li><b>'CH'</b> methine group (C plus 1 bonded H as a united-atom).</li>
        </ul>
      </ul>
      <b>Coulombic interactions</b> 
      <ul>
        There are no coulombic interactions for this force field.
      </ul>
      <a href="../towhee_capabilities.html">Return to the Towhee Capabilities web page</a> 
      <p>&nbsp;</p>
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<i><font size="2">Send comments to:</font></i> <font size="2"> 
<a href="mailto:marcus_martin@users.sourceforge.net">Marcus G. Martin</a><br>
<i>Last updated:</i> 
<!-- #BeginDate format:Am1 -->September 07, 2005<!-- #EndDate -->
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