<html> <head> <title>MCCCS Towhee (SPC-E water)</title> </head> <body bgcolor="#FFFFFF" text="#000000"> <table width="675" border="0" cellspacing="0" cellpadding="0" height="590"> <tr> <td colspan="2" height="29"> <div align="center"> <font size="5"> <b><font face="Arial, Helvetica, sans-serif"><a name="top"></a>MCCCS Towhee (SPC-E water)</font></b> </font> </div> </td> </tr> <A href="http://sourceforge.net"> <IMG src="http://sourceforge.net/sflogo.php?group_id=87039&type=5" width="210" height="62" border="0" alt="SourceForge.net Logo" align="right"/> </A> <tr> <td width="18" height="371" valign="top"> <p> </p> <p> </p> </td> <td width="697" valign="top"> <b>Overview</b> <ul> This section covers the Simple Point Charge - Extended (SPC-E) water model parameters as they are implemented into the towhee_ff_SPC-E file in the ForceFields directory. All of the Towhee atom types for the SPC-E water force field are listed, along with a short description of their meanings. This is not really a comphrehensive stand-alone force field, but instead a popular model for water. Note that these are Lennard-Jones (12-6) parameters and can only be combined with other Lennard-Jones (12-6) force fields. Any discrepencies (especially typos) from the published SPC-E force field values are the sole responsibility of Marcus G. Martin, and I welcome feedback on how this implementation compares with other programs. <p> </p> </ul> <b>References for SPC-E water</b> <ul> <li><a href="../references.html#berendsen_et_al_1987">Berendsen <i>et al.</i> 1987</a></li> </ul> <b>SPC-E in Towhee</b> <ul> The official force field name for Simple Point Charge - Extended water in Towhee is 'SPC-E'. Here I list all of the SPC-E atom names for use in the towhee_input file, along with a brief description (although the meaning of the atom names should be obvious). Please note that the capitalization and spacing pattern is important and must be followed exactly as listed here. <ul> <li><b>'HW'</b> : hydrogen in water</li> <li><b>'OW'</b> : oxygen in water</li> </ul> </ul> <b>Coulombic interactions</b> <ul> Atom centered point charges are used to represent the electrostatic interactions. <ul> <li><b>'HW'</b> : 0.4238</li> <li><b>'OW'</b> : -0.8476</li> </ul> </ul> <b>Improper torsions</b> <ul> This force field only has parameters for water so there are no improper torsions. </ul> <b>Proteins</b> <ul> This force field only has parameters for water, and while you are welcome to use them with another protein force field, there are no amino acids in the SPC-E force field. </ul> <a href="../towhee_capabilities.html">Return to the Towhee Capabilities web page</a> <p> </p> </td> </tr> </table> <hr width="715" align="left"> <i><font size="2">Send comments to:</font></i> <font size="2"> <a href="mailto:marcus_martin@users.sourceforge.net">Marcus G. Martin</a><br> <i>Last updated:</i> <!-- #BeginDate format:Am1 -->September 07, 2005<!-- #EndDate --> </font> <br> </body> </html>