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towhee-doc-7.0.1-1.fc14.noarch.rpm

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  <title>MCCCS Towhee (TIP3P)</title>
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      <div align="center"> <font size="5"> <b><font face="Arial, Helvetica, sans-serif"><a name="top"></a>MCCCS 
        Towhee (TIP3P)</font></b> </font> </div>
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      <p>&nbsp; </p>
      <p>&nbsp;</p>
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    <td width="697" valign="top"> <b>Overview</b> 
      <ul>
        This section covers the TIP3P force field for water as it is implemented into the towhee_ff_TIP3P file in the 
	ForceFields directory. All of the Towhee atom types for this force field 
        are listed, along with a short description of their meanings.  This is perhaps the most popular water 
	potential of all time and several other force fields use similar parameterizations.  TIP3P is a rigid 
	water model that has a Lennard-Jones site on the Oxygen and bare charge sites on the Hydrogens.
	The Jorgensen group has also parameterized two other water models that utilize additional interaction sites.
	Please see the <a href="tip4p.html">TIP4P</a>and <a href="tip5p.html">TIP5P</a> web pages for more information 
	about those water models.  This water model is suitable for use with any Lennard-Jones forcefield, but is 
	especially well suited for the OPLS family of potentials.  Please see the <a href="oplsua.html">OPLS-ua</a>,
	<a href="oplsaa.html">OPLS-aa</a>, and <a href="opls2001.html">OPLS-2001</a> web pages for more information.
        Any discrepencies (especially typos) from the published force field values are the sole responsibility of 
	<a href="mailto:marcus_martin@users.sourceforge.net">Marcus Martin</a>, and I welcome feedback on how this 
        implementation compares with other programs. 
        <p>&nbsp;</p>
      </ul>
      <b>References for TIP3P</b> 
      <ul>
        TIP3P was originally published in the following paper
        <ul>
          <li><a href="../references.html#jorgensen_et_al_1983">Jorgensen <i>et al.</i> 1983</a></li>
        </ul>
      </ul>
      <b>TIP3P in Towhee</b> 
      <ul>
        The official force field name for TIP3P in Towhee is 'TIP3P'. Here 
        I list all of the atom names for use in the towhee_input file, 
        along with a brief description taken from the literature.
        Please note that the capitalization and spacing pattern is important and must be 
	followed exactly as listed here. 
        <ul>
          <li><b>'H'</b> : hydrogen in water</li>
          <li><b>'O'</b> : oxygen in water</li>
        </ul>
      </ul>
      <b>Coulombic interactions</b> 
      <ul>
        TIP3P uses atom-centered point charges to represent the electrostatic interactions.
	The 'bond increment' method for assigning charges is implemented for this force field.
	Please see the <a href="../inpstyle/inpstyle_2.html">inpstyle 2</a> documentation for 
	further information on enabling this option.
	Here I list the bond increments for the atom names listed above.  The value of the bond increment is added 
	to the first atom listed and subtracted from the second atom listed.
	<ul>
	  <li><font color="green">H</font> - <font color="green">O</font>: 0.417</li>
	</ul>
      </ul>
      <a href="../towhee_capabilities.html">Return to the Towhee Capabilities web page</a> 
      <p>&nbsp;</p>
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<i><font size="2">Send comments to:</font></i> <font size="2"> 
<a href="mailto:marcus_martin@users.sourceforge.net">Marcus G. Martin</a><br>
<i>Last updated:</i> 
<!-- #BeginDate format:Am1 -->September 07, 2005<!-- #EndDate -->
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