Sophie

Sophie

distrib > Fedora > 14 > x86_64 > media > updates > by-pkgid > 2f8321c8e2a11ea8b160a642cfc9fd7f > files > 227

towhee-doc-7.0.1-1.fc14.noarch.rpm

<html>
<head>
  <title>MCCCS Towhee (Vega et al 1992)</title>
</head>

<body bgcolor="#FFFFFF" text="#000000">

<table width="675" border="0" cellspacing="0" cellpadding="0" height="590">
  <tr> 
    <td colspan="2" height="29"> 
      <div align="center"> <font size="5"> <b><font face="Arial, Helvetica, sans-serif"><a name="top"></a>MCCCS 
        Towhee (Vega <i>et al.</i> 1992)</font></b> </font> </div>
    </td>
  </tr>
<A href="http://sourceforge.net"> 
  <IMG src="http://sourceforge.net/sflogo.php?group_id=87039&amp;type=5" width="210" height="62" border="0" 
  alt="SourceForge.net Logo" align="right"/>
</A>
  <tr> 
    <td width="18" height="371" valign="top"> 
      <p>&nbsp; </p>
      <p>&nbsp;</p>
    </td>

    <td width="697" valign="top"> <b>Overview</b> 
      <ul>
        This section covers Vega <i>et al.</i> 1992 parameters as they are implemented into the towhee_ff_Vega1992
	file in the ForceFields directory.  This force field is simply a collection of Square Well parameters that 
	Vega <i>et al.</i> used in a vapor-liquid coexistence curve study.  Suitable bonded parameters for this force 
	field have also been added into this implementation.
      </ul>

      <b>References for Vega 1992</b> 
      <ul>
	  <li><a href="../references.html#vega_et_al_1992">Vega <i>et al.</i> 1992</a></li>
      </ul>	

      <b>Vega 1992 in Towhee</b> 

      <ul>
        The official force field name for Vega <i>et al.</i> 1992 in Towhee is 'Vega1992'.  Here is a list of all
	Vega1992 atom names currently in use for the towhee_input file,
	along with a brief description (although the meaning of the atom names should be obvious).  
	Please note that the capitalization and spacing pattern is important 
	and must be followed exactly as listed here.
	<ul>
          <li><b>'lam_1.25'</b> : sigma [nbcoeff(1)] is 1.0, lamda [nbcoeff(2)]
	    is 1.25, and the well depth [nbcoeff(3)] is 1.0.</li>
          <li><b>'lam_1.375'</b> : sigma [nbcoeff(1)] is 1.0, lamda [nbcoeff(2)]
	    is 1.375, and the well depth [nbcoeff(3)] is 1.0.</li>
          <li><b>'lam_1.5'</b> : sigma [nbcoeff(1)] is 1.0, lamda [nbcoeff(2)]
	    is 1.5, and the well depth [nbcoeff(3)] is 1.0.</li>
          <li><b>'lam_1.75'</b> : sigma [nbcoeff(1)] is 1.0, lamda [nbcoeff(2)]
	    is 1.75, and the well depth [nbcoeff(3)] is 1.0.</li>
          <li><b>'lam_2.0'</b> : sigma [nbcoeff(1)] is 1.0, lamda [nbcoeff(2)]
	    is 2.0, and the well depth [nbcoeff(3)] is 1.0.</li>
	</ul>
      </ul>

      <b>Coulombic interactions</b> 
      <ul>
        It is possible to combine the square well potential with point charges.  Simply assign the point charges to the 
	atoms as you see fit.
      </ul>

      <a href="../towhee_capabilities.html">Return to the Towhee Capabilities web page</a> 
      <p>&nbsp;</p>
    </td>
  </tr>
</table>


<hr width="715" align="left">
<i><font size="2">Send comments to:</font></i> <font size="2"> 
<a href="mailto:marcus_martin@users.sourceforge.net">Marcus G. Martin</a><br>
<i>Last updated:</i> 
<!-- #BeginDate format:Am1 -->September 07, 2005<!-- #EndDate -->
</font> <br>
</body>
</html>