Name: primer3 Version: 2.3.5 Release: 1%{?dist} Summary: PCR primer design tool Group: Applications/Productivity License: BSD and GPLv2+ URL: http://primer3.sourceforge.net Source0: http://downloads.sourceforge.net/%{name}/%{name}-%{version}.tar.gz BuildRoot: %{_tmppath}/%{name}-%{version}-%{release}-root-%(%{__id_u} -n) %description Primer3 is a widely used program for designing PCR primers (PCR = "Polymerase Chain Reaction"). PCR is an essential and ubiquitous tool in genetics and molecular biology. Primer3 can also design hybridization probes and sequencing primers. PCR is used for many different goals. Consequently, primer3 has many different input parameters that you control and that tell primer3 exactly what characteristics make good primers for your goals. %prep %setup -q -n %{name}-%{version} chmod -x src/* chmod +x src/primer3_config # causes permissions issue if removed sed -i -e 's|CFLAGS = $(CC_OPTS) $(O_OPTS)|CFLAGS = $(CC_OPTS) $(O_OPTS) $(INIT_CFLAGS)|' src/Makefile sed -i 's/\r//' primer3web_v0_4_0_default_settings.txt sed -i -e 's|/opt/primer3_config|/etc/primer3_config|' src/release_notes.txt src/thal_main.c src/primer3_boulder_main.c primer3_manual.htm %build cd src export INIT_CFLAGS="%{optflags}" make %{?_smp_mflags} %install rm -rf $RPM_BUILD_ROOT mkdir -p $RPM_BUILD_ROOT%{_bindir} install -p -m 0755 src/%{name}_core $RPM_BUILD_ROOT%{_bindir}/%{name}_core install -p -m 0755 src/oligotm $RPM_BUILD_ROOT%{_bindir}/oligotm install -p -m 0755 src/ntdpal $RPM_BUILD_ROOT%{_bindir}/ntdpal mkdir -p $RPM_BUILD_ROOT%{_sysconfdir}/primer3_config cp -r src/primer3_config $RPM_BUILD_ROOT%{_sysconfdir}/ %check pushd src %{?_with_tests:make test} popd %clean rm -rf $RPM_BUILD_ROOT %files %defattr(-,root,root,-) #%doc README.txt COPYING.txt how-to-cite.txt example %doc COPYING.txt example primer3_manual.htm %doc *settings.txt %doc src/gpl-2.0.txt src/release_notes.txt %{_bindir}/%{name}_core %{_bindir}/oligotm %{_bindir}/ntdpal %{_sysconfdir}/primer3_config %changelog * Thu Sep 05 2013 Pierre-Yves Chibon <pingou@pingoured.fr> - 2.3.5-1 - Update to 2.3.5 * Sun Aug 04 2013 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 2.3.4-4 - Rebuilt for https://fedoraproject.org/wiki/Fedora_20_Mass_Rebuild * Thu Feb 14 2013 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 2.3.4-3 - Rebuilt for https://fedoraproject.org/wiki/Fedora_19_Mass_Rebuild * Sat Jul 21 2012 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 2.3.4-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_18_Mass_Rebuild * Tue Jun 26 2012 Pierre-Yves Chibon <pingou@pingoured.fr> - 2.3.4-1 - Update to 2.3.4 * Tue Mar 27 2012 Pierre-Yves Chibon <pingou@pingoured.fr> - 2.3.2-2 - Include the primer3_config folder RHBZ#821501 - Move primer3_config from /opt/ where upstream wants it to /etc where I want it * Tue Mar 27 2012 Pierre-Yves Chibon <pingou@pingoured.fr> - 2.3.2-1 - Update to release 2.3.2 * Wed Feb 22 2012 Pierre-Yves Chibon <pingou@pingoured.fr> - 2.3.0-1 - Update to release 2.3.0 * Sat Jan 14 2012 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 2.2.3-3 - Rebuilt for https://fedoraproject.org/wiki/Fedora_17_Mass_Rebuild * Wed Feb 09 2011 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 2.2.3-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_15_Mass_Rebuild * Thu Nov 25 2010 pingou <pingou@pingoured.fr> - 2.2.3-1 - Update to 2.2.3 - Fix permission issue * Sat Apr 24 2010 pingou <pingou@pingoured.fr> - 2.2.2-pre1 - Build version 2.2.2 beta * Sun Jul 26 2009 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.1.4-7 - Rebuilt for https://fedoraproject.org/wiki/Fedora_12_Mass_Rebuild * Thu Feb 26 2009 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.1.4-6 - Rebuilt for https://fedoraproject.org/wiki/Fedora_11_Mass_Rebuild * Mon Oct 06 2008 pingou <pingoufc4@yahoo.fr> 1.1.4-5 - Remove headers, not needed * Tue Aug 12 2008 pingou <pingoufc4@yahoo.fr> 1.1.4-4 - Change the check section to use conditionnality --with tests runs the test - defaults does not * Mon Aug 11 2008 pingou <pingoufc4@yahoo.fr> 1.1.4-3 - Move the export to the build section - Move the make test to the check section - Set the binaries perms to 755 * Wed Aug 06 2008 pingou <pingoufc4@yahoo.fr> 1.1.4-2 - Keep the timestamp in the README.txt - Change the CFLAG for the compilation - Remove BR perl * Thu Jul 24 2008 pingou <pingoufc4@yahoo.fr> 1.1.4-1 - First build for Fedora