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<a href="Bio-module.html">Package Bio</a> ::
<a href="Bio.Restriction-module.html">Package Restriction</a> ::
<a href="Bio.Restriction.Restriction-module.html">Module Restriction</a> ::
Class Eco47I
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<!-- ==================== TYPE DESCRIPTION ==================== -->
<h1 class="epydoc">Type Eco47I</h1><p class="nomargin-top"><span class="codelink"><a href="Bio.Restriction.Restriction-pysrc.html#Eco47I">source code</a></span></p>
<pre class="base-tree">
object --+
|
type --+
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<a href="Bio.Restriction.Restriction.RestrictionType-class.html" onclick="show_private();">RestrictionType</a> --+
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<a href="Bio.Restriction.Restriction.AbstractCut-class.html" onclick="show_private();">AbstractCut</a> --+
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<a href="Bio.Restriction.Restriction.NonPalindromic-class.html" onclick="show_private();">NonPalindromic</a> --+
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object --+ |
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type --+ |
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<a href="Bio.Restriction.Restriction.RestrictionType-class.html" onclick="show_private();">RestrictionType</a> --+ |
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<a href="Bio.Restriction.Restriction.AbstractCut-class.html" onclick="show_private();">AbstractCut</a> --+ |
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<a href="Bio.Restriction.Restriction.OneCut-class.html" onclick="show_private();">OneCut</a> --+
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object --+ |
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type --+ |
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<a href="Bio.Restriction.Restriction.RestrictionType-class.html" onclick="show_private();">RestrictionType</a> --+ |
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<a href="Bio.Restriction.Restriction.AbstractCut-class.html" onclick="show_private();">AbstractCut</a> --+ |
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<a href="Bio.Restriction.Restriction.Ov5-class.html" onclick="show_private();">Ov5</a> --+
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object --+ |
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type --+ |
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<a href="Bio.Restriction.Restriction.RestrictionType-class.html" onclick="show_private();">RestrictionType</a> --+ |
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<a href="Bio.Restriction.Restriction.AbstractCut-class.html" onclick="show_private();">AbstractCut</a> --+ |
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<a href="Bio.Restriction.Restriction.Ambiguous-class.html" onclick="show_private();">Ambiguous</a> --+
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object --+ |
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type --+ |
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<a href="Bio.Restriction.Restriction.RestrictionType-class.html" onclick="show_private();">RestrictionType</a> --+ |
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<a href="Bio.Restriction.Restriction.AbstractCut-class.html" onclick="show_private();">AbstractCut</a> --+ |
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<a href="Bio.Restriction.Restriction.Meth_Undep-class.html" onclick="show_private();">Meth_Undep</a> --+
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object --+ |
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type --+ |
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<a href="Bio.Restriction.Restriction.RestrictionType-class.html" onclick="show_private();">RestrictionType</a> --+ |
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<a href="Bio.Restriction.Restriction.AbstractCut-class.html" onclick="show_private();">AbstractCut</a> --+ |
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<a href="Bio.Restriction.Restriction.Commercially_available-class.html" onclick="show_private();">Commercially_available</a> --+
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object --+ |
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type --+ |
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<a href="Bio.Restriction.Restriction.RestrictionType-class.html" onclick="show_private();">RestrictionType</a> --+ |
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<a href="Bio.Restriction.Restriction.AbstractCut-class.html" onclick="show_private();">AbstractCut</a> --+
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object --+ |
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type --+ |
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<a href="Bio.Restriction.Restriction.RestrictionType-class.html" onclick="show_private();">RestrictionType</a> --+
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<strong class="uidshort">Eco47I</strong>
</pre>
<hr />
<!-- ==================== INSTANCE METHODS ==================== -->
<a name="section-InstanceMethods"></a>
<table class="summary" border="1" cellpadding="3"
cellspacing="0" width="100%" bgcolor="white">
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<td align="left"><span class="table-header">Instance Methods</span></td>
<td align="right" valign="top"
><span class="options">[<a href="#section-InstanceMethods"
class="privatelink" onclick="toggle_private();"
>hide private</a>]</span></td>
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<td colspan="2" class="summary">
<p class="indent-wrapped-lines"><b>Inherited from <code><a href="Bio.Restriction.Restriction.RestrictionType-class.html" onclick="show_private();">RestrictionType</a></code></b>:
<code><a href="Bio.Restriction.Restriction.RestrictionType-class.html#__add__">__add__</a></code>,
<code><a href="Bio.Restriction.Restriction.RestrictionType-class.html#__div__">__div__</a></code>,
<code><a href="Bio.Restriction.Restriction.RestrictionType-class.html#__eq__">__eq__</a></code>,
<code><a href="Bio.Restriction.Restriction.RestrictionType-class.html#__floordiv__">__floordiv__</a></code>,
<code><a href="Bio.Restriction.Restriction.RestrictionType-class.html#__ge__">__ge__</a></code>,
<code><a href="Bio.Restriction.Restriction.RestrictionType-class.html#__gt__">__gt__</a></code>,
<code><a href="Bio.Restriction.Restriction.RestrictionType-class.html#__hash__">__hash__</a></code>,
<code><a href="Bio.Restriction.Restriction.RestrictionType-class.html#__init__">__init__</a></code>,
<code><a href="Bio.Restriction.Restriction.RestrictionType-class.html#__le__">__le__</a></code>,
<code><a href="Bio.Restriction.Restriction.RestrictionType-class.html#__len__">__len__</a></code>,
<code><a href="Bio.Restriction.Restriction.RestrictionType-class.html#__lt__">__lt__</a></code>,
<code><a href="Bio.Restriction.Restriction.RestrictionType-class.html#__mod__">__mod__</a></code>,
<code><a href="Bio.Restriction.Restriction.RestrictionType-class.html#__ne__">__ne__</a></code>,
<code><a href="Bio.Restriction.Restriction.RestrictionType-class.html#__rdiv__">__rdiv__</a></code>,
<code><a href="Bio.Restriction.Restriction.RestrictionType-class.html#__repr__">__repr__</a></code>,
<code><a href="Bio.Restriction.Restriction.RestrictionType-class.html#__rfloordiv__">__rfloordiv__</a></code>,
<code><a href="Bio.Restriction.Restriction.RestrictionType-class.html#__rshift__">__rshift__</a></code>,
<code><a href="Bio.Restriction.Restriction.RestrictionType-class.html#__rtruediv__">__rtruediv__</a></code>,
<code><a href="Bio.Restriction.Restriction.RestrictionType-class.html#__str__">__str__</a></code>,
<code><a href="Bio.Restriction.Restriction.RestrictionType-class.html#__truediv__">__truediv__</a></code>
</p>
<p class="indent-wrapped-lines"><b>Inherited from <code>type</code></b>:
<code>__call__</code>,
<code>__delattr__</code>,
<code>__getattribute__</code>,
<code>__instancecheck__</code>,
<code>__new__</code>,
<code>__setattr__</code>,
<code>__subclasscheck__</code>,
<code>__subclasses__</code>,
<code>mro</code>
</p>
<p class="indent-wrapped-lines"><b>Inherited from <code>object</code></b>:
<code>__format__</code>,
<code>__reduce__</code>,
<code>__reduce_ex__</code>,
<code>__sizeof__</code>,
<code>__subclasshook__</code>
</p>
</td>
</tr>
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<!-- ==================== CLASS METHODS ==================== -->
<a name="section-ClassMethods"></a>
<table class="summary" border="1" cellpadding="3"
cellspacing="0" width="100%" bgcolor="white">
<tr bgcolor="#70b0f0" class="table-header">
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<tr valign="top">
<td align="left"><span class="table-header">Class Methods</span></td>
<td align="right" valign="top"
><span class="options">[<a href="#section-ClassMethods"
class="privatelink" onclick="toggle_private();"
>hide private</a>]</span></td>
</tr>
</table>
</td>
</tr>
<tr>
<td colspan="2" class="summary">
<p class="indent-wrapped-lines"><b>Inherited from <code><a href="Bio.Restriction.Restriction.NonPalindromic-class.html" onclick="show_private();">NonPalindromic</a></code></b>:
<code><a href="Bio.Restriction.Restriction.NonPalindromic-class.html#is_palindromic">is_palindromic</a></code>
</p>
<div class="private"> <p class="indent-wrapped-lines"><b>Inherited from <code><a href="Bio.Restriction.Restriction.NonPalindromic-class.html" onclick="show_private();">NonPalindromic</a></code></b> (private):
<code><a href="Bio.Restriction.Restriction.NonPalindromic-class.html#_search" onclick="show_private();">_search</a></code>
</p></div>
<p class="indent-wrapped-lines"><b>Inherited from <code><a href="Bio.Restriction.Restriction.OneCut-class.html" onclick="show_private();">OneCut</a></code></b>:
<code><a href="Bio.Restriction.Restriction.OneCut-class.html#characteristic">characteristic</a></code>,
<code><a href="Bio.Restriction.Restriction.OneCut-class.html#cut_once">cut_once</a></code>,
<code><a href="Bio.Restriction.Restriction.OneCut-class.html#cut_twice">cut_twice</a></code>
</p>
<div class="private"> <p class="indent-wrapped-lines"><b>Inherited from <code><a href="Bio.Restriction.Restriction.OneCut-class.html" onclick="show_private();">OneCut</a></code></b> (private):
<code><a href="Bio.Restriction.Restriction.OneCut-class.html#_modify" onclick="show_private();">_modify</a></code>,
<code><a href="Bio.Restriction.Restriction.OneCut-class.html#_rev_modify" onclick="show_private();">_rev_modify</a></code>
</p></div>
<p class="indent-wrapped-lines"><b>Inherited from <code><a href="Bio.Restriction.Restriction.Ov5-class.html" onclick="show_private();">Ov5</a></code></b>:
<code><a href="Bio.Restriction.Restriction.Ov5-class.html#catalyse">catalyse</a></code>,
<code><a href="Bio.Restriction.Restriction.Ov5-class.html#catalyze">catalyze</a></code>,
<code><a href="Bio.Restriction.Restriction.Ov5-class.html#compatible_end">compatible_end</a></code>,
<code><a href="Bio.Restriction.Restriction.Ov5-class.html#is_3overhang">is_3overhang</a></code>,
<code><a href="Bio.Restriction.Restriction.Ov5-class.html#is_5overhang">is_5overhang</a></code>,
<code><a href="Bio.Restriction.Restriction.Ov5-class.html#is_blunt">is_blunt</a></code>,
<code><a href="Bio.Restriction.Restriction.Ov5-class.html#overhang">overhang</a></code>
</p>
<div class="private"> <p class="indent-wrapped-lines"><b>Inherited from <code><a href="Bio.Restriction.Restriction.Ov5-class.html" onclick="show_private();">Ov5</a></code></b> (private):
<code><a href="Bio.Restriction.Restriction.Ov5-class.html#_mod1" onclick="show_private();">_mod1</a></code>
</p></div>
<p class="indent-wrapped-lines"><b>Inherited from <code><a href="Bio.Restriction.Restriction.Ambiguous-class.html" onclick="show_private();">Ambiguous</a></code></b>:
<code><a href="Bio.Restriction.Restriction.Ambiguous-class.html#elucidate">elucidate</a></code>,
<code><a href="Bio.Restriction.Restriction.Ambiguous-class.html#is_ambiguous">is_ambiguous</a></code>,
<code><a href="Bio.Restriction.Restriction.Ambiguous-class.html#is_defined">is_defined</a></code>,
<code><a href="Bio.Restriction.Restriction.Ambiguous-class.html#is_unknown">is_unknown</a></code>
</p>
<div class="private"> <p class="indent-wrapped-lines"><b>Inherited from <code><a href="Bio.Restriction.Restriction.Ambiguous-class.html" onclick="show_private();">Ambiguous</a></code></b> (private):
<code><a href="Bio.Restriction.Restriction.Ambiguous-class.html#_drop" onclick="show_private();">_drop</a></code>,
<code><a href="Bio.Restriction.Restriction.Ambiguous-class.html#_mod2" onclick="show_private();">_mod2</a></code>
</p></div>
<p class="indent-wrapped-lines"><b>Inherited from <code><a href="Bio.Restriction.Restriction.Meth_Undep-class.html" onclick="show_private();">Meth_Undep</a></code></b>:
<code><a href="Bio.Restriction.Restriction.Meth_Undep-class.html#is_methylable">is_methylable</a></code>
</p>
<p class="indent-wrapped-lines"><b>Inherited from <code><a href="Bio.Restriction.Restriction.Commercially_available-class.html" onclick="show_private();">Commercially_available</a></code></b>:
<code><a href="Bio.Restriction.Restriction.Commercially_available-class.html#buffers">buffers</a></code>,
<code><a href="Bio.Restriction.Restriction.Commercially_available-class.html#is_comm">is_comm</a></code>,
<code><a href="Bio.Restriction.Restriction.Commercially_available-class.html#supplier_list">supplier_list</a></code>,
<code><a href="Bio.Restriction.Restriction.Commercially_available-class.html#suppliers">suppliers</a></code>
</p>
<p class="indent-wrapped-lines"><b>Inherited from <code><a href="Bio.Restriction.Restriction.AbstractCut-class.html" onclick="show_private();">AbstractCut</a></code></b>:
<code><a href="Bio.Restriction.Restriction.AbstractCut-class.html#all_suppliers">all_suppliers</a></code>,
<code><a href="Bio.Restriction.Restriction.AbstractCut-class.html#equischizomers">equischizomers</a></code>,
<code><a href="Bio.Restriction.Restriction.AbstractCut-class.html#frequency">frequency</a></code>,
<code><a href="Bio.Restriction.Restriction.AbstractCut-class.html#is_equischizomer">is_equischizomer</a></code>,
<code><a href="Bio.Restriction.Restriction.AbstractCut-class.html#is_isoschizomer">is_isoschizomer</a></code>,
<code><a href="Bio.Restriction.Restriction.AbstractCut-class.html#is_neoschizomer">is_neoschizomer</a></code>,
<code><a href="Bio.Restriction.Restriction.AbstractCut-class.html#isoschizomers">isoschizomers</a></code>,
<code><a href="Bio.Restriction.Restriction.AbstractCut-class.html#neoschizomers">neoschizomers</a></code>,
<code><a href="Bio.Restriction.Restriction.AbstractCut-class.html#search">search</a></code>
</p>
</td>
</tr>
</table>
<!-- ==================== CLASS VARIABLES ==================== -->
<a name="section-ClassVariables"></a>
<table class="summary" border="1" cellpadding="3"
cellspacing="0" width="100%" bgcolor="white">
<tr bgcolor="#70b0f0" class="table-header">
<td colspan="2" class="table-header">
<table border="0" cellpadding="0" cellspacing="0" width="100%">
<tr valign="top">
<td align="left"><span class="table-header">Class Variables</span></td>
<td align="right" valign="top"
><span class="options">[<a href="#section-ClassVariables"
class="privatelink" onclick="toggle_private();"
>hide private</a>]</span></td>
</tr>
</table>
</td>
</tr>
<tr>
<td width="15%" align="right" valign="top" class="summary">
<span class="summary-type"> </span>
</td><td class="summary">
<a name="charac"></a><span class="summary-name">charac</span> = <code title="(1, -1, None, None, 'GGWCC')"><code class="variable-group">(</code>1<code class="variable-op">, </code>-1<code class="variable-op">, </code>None<code class="variable-op">, </code>None<code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">GGWCC</code><code class="variable-quote">'</code><code class="variable-group">)</code></code>
</td>
</tr>
<tr>
<td width="15%" align="right" valign="top" class="summary">
<span class="summary-type"> </span>
</td><td class="summary">
<a href="Bio.Restriction.Restriction.Eco47I-class.html#compsite" class="summary-name">compsite</a> = <code title="re.compile(r'(?P<Eco47I>GG[AT]CC)|(?P<Eco47I_as>GG[AT]CC)')">re.compile(r'<code class="re-group">(?P<</code><code class="re-ref">Eco47I</code><code class="re-group">></code>GG<code class="re-group">[</code>AT<code class="re-group">]</code>CC<code class="re-group">)</code><code class="re-op">|</code><code class="re-group">(?P<</code><code class="re-ref">Eco47I_as</code><code class="re-group">></code>GG<code class="re-group">[</code><code class="variable-ellipsis">...</code></code>
</td>
</tr>
<tr>
<td width="15%" align="right" valign="top" class="summary">
<span class="summary-type"> </span>
</td><td class="summary">
<a name="dna"></a><span class="summary-name">dna</span> = <code title="None">None</code><br />
hash(x)
</td>
</tr>
<tr>
<td width="15%" align="right" valign="top" class="summary">
<span class="summary-type"> </span>
</td><td class="summary">
<a name="freq"></a><span class="summary-name">freq</span> = <code title="512">512</code>
</td>
</tr>
<tr>
<td width="15%" align="right" valign="top" class="summary">
<span class="summary-type"> </span>
</td><td class="summary">
<a name="fst3"></a><span class="summary-name">fst3</span> = <code title="-1">-1</code>
</td>
</tr>
<tr>
<td width="15%" align="right" valign="top" class="summary">
<span class="summary-type"> </span>
</td><td class="summary">
<a name="fst5"></a><span class="summary-name">fst5</span> = <code title="1">1</code>
</td>
</tr>
<tr>
<td width="15%" align="right" valign="top" class="summary">
<span class="summary-type"> </span>
</td><td class="summary">
<a name="inact_temp"></a><span class="summary-name">inact_temp</span> = <code title="65">65</code>
</td>
</tr>
<tr>
<td width="15%" align="right" valign="top" class="summary">
<span class="summary-type"> </span>
</td><td class="summary">
<a name="opt_temp"></a><span class="summary-name">opt_temp</span> = <code title="37">37</code>
</td>
</tr>
<tr>
<td width="15%" align="right" valign="top" class="summary">
<span class="summary-type"> </span>
</td><td class="summary">
<a name="ovhg"></a><span class="summary-name">ovhg</span> = <code title="-3">-3</code>
</td>
</tr>
<tr>
<td width="15%" align="right" valign="top" class="summary">
<span class="summary-type"> </span>
</td><td class="summary">
<a name="ovhgseq"></a><span class="summary-name">ovhgseq</span> = <code title="'GWC'"><code class="variable-quote">'</code><code class="variable-string">GWC</code><code class="variable-quote">'</code></code>
</td>
</tr>
<tr>
<td width="15%" align="right" valign="top" class="summary">
<span class="summary-type"> </span>
</td><td class="summary">
<a name="results"></a><span class="summary-name">results</span> = <code title="None">None</code><br />
hash(x)
</td>
</tr>
<tr>
<td width="15%" align="right" valign="top" class="summary">
<span class="summary-type"> </span>
</td><td class="summary">
<a name="scd3"></a><span class="summary-name">scd3</span> = <code title="None">None</code><br />
hash(x)
</td>
</tr>
<tr>
<td width="15%" align="right" valign="top" class="summary">
<span class="summary-type"> </span>
</td><td class="summary">
<a name="scd5"></a><span class="summary-name">scd5</span> = <code title="None">None</code><br />
hash(x)
</td>
</tr>
<tr>
<td width="15%" align="right" valign="top" class="summary">
<span class="summary-type"> </span>
</td><td class="summary">
<a name="site"></a><span class="summary-name">site</span> = <code title="'GGWCC'"><code class="variable-quote">'</code><code class="variable-string">GGWCC</code><code class="variable-quote">'</code></code>
</td>
</tr>
<tr>
<td width="15%" align="right" valign="top" class="summary">
<span class="summary-type"> </span>
</td><td class="summary">
<a name="size"></a><span class="summary-name">size</span> = <code title="5">5</code>
</td>
</tr>
<tr>
<td width="15%" align="right" valign="top" class="summary">
<span class="summary-type"> </span>
</td><td class="summary">
<a name="substrat"></a><span class="summary-name">substrat</span> = <code title="'DNA'"><code class="variable-quote">'</code><code class="variable-string">DNA</code><code class="variable-quote">'</code></code>
</td>
</tr>
<tr>
<td width="15%" align="right" valign="top" class="summary">
<span class="summary-type"> </span>
</td><td class="summary">
<a name="suppl"></a><span class="summary-name">suppl</span> = <code title="('F', 'O')"><code class="variable-group">(</code><code class="variable-quote">'</code><code class="variable-string">F</code><code class="variable-quote">'</code><code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">O</code><code class="variable-quote">'</code><code class="variable-group">)</code></code>
</td>
</tr>
</table>
<!-- ==================== PROPERTIES ==================== -->
<a name="section-Properties"></a>
<table class="summary" border="1" cellpadding="3"
cellspacing="0" width="100%" bgcolor="white">
<tr bgcolor="#70b0f0" class="table-header">
<td colspan="2" class="table-header">
<table border="0" cellpadding="0" cellspacing="0" width="100%">
<tr valign="top">
<td align="left"><span class="table-header">Properties</span></td>
<td align="right" valign="top"
><span class="options">[<a href="#section-Properties"
class="privatelink" onclick="toggle_private();"
>hide private</a>]</span></td>
</tr>
</table>
</td>
</tr>
<tr>
<td colspan="2" class="summary">
<p class="indent-wrapped-lines"><b>Inherited from <code>type</code></b>:
<code>__abstractmethods__</code>,
<code>__base__</code>,
<code>__bases__</code>,
<code>__basicsize__</code>,
<code>__dictoffset__</code>,
<code>__flags__</code>,
<code>__itemsize__</code>,
<code>__mro__</code>,
<code>__name__</code>,
<code>__weakrefoffset__</code>
</p>
<p class="indent-wrapped-lines"><b>Inherited from <code>object</code></b>:
<code>__class__</code>
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<h3 class="epydoc">compsite</h3>
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<dt>Value:</dt>
<dd><table><tr><td><pre class="variable">
re.compile(r'<code class="re-group">(?P<</code><code class="re-ref">Eco47I</code><code class="re-group">></code>GG<code class="re-group">[</code>AT<code class="re-group">]</code>CC<code class="re-group">)</code><code class="re-op">|</code><code class="re-group">(?P<</code><code class="re-ref">Eco47I_as</code><code class="re-group">></code>GG<code class="re-group">[</code>AT<code class="re-group">]</code>CC<code class="re-group">)</code>')
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