<?xml version="1.0" encoding="ascii"?> <!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "DTD/xhtml1-transitional.dtd"> <html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en"> <head> <title>Bio.SeqIO._index.FastqRandomAccess</title> <link rel="stylesheet" href="epydoc.css" type="text/css" /> <script type="text/javascript" src="epydoc.js"></script> </head> <body bgcolor="white" text="black" link="blue" vlink="#204080" alink="#204080"> <!-- ==================== NAVIGATION BAR ==================== --> <table class="navbar" border="0" width="100%" cellpadding="0" bgcolor="#a0c0ff" cellspacing="0"> <tr valign="middle"> <!-- Tree link --> <th> <a href="module-tree.html">Trees</a> </th> <!-- Index link --> <th> <a href="identifier-index.html">Indices</a> </th> <!-- Help link --> <th> <a href="help.html">Help</a> </th> <th class="navbar" width="100%"></th> </tr> </table> <table width="100%" cellpadding="0" cellspacing="0"> <tr valign="top"> <td width="100%"> <span class="breadcrumbs"> <a href="Bio-module.html">Package Bio</a> :: <a href="Bio.SeqIO-module.html">Package SeqIO</a> :: <a href="Bio.SeqIO._index-module.html">Module _index</a> :: Class FastqRandomAccess </span> </td> <td> <table cellpadding="0" cellspacing="0"> <!-- hide/show private --> <tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink" onclick="toggle_private();">hide private</a>]</span></td></tr> <tr><td align="right"><span class="options" >[<a href="frames.html" target="_top">frames</a >] | <a href="Bio.SeqIO._index.FastqRandomAccess-class.html" target="_top">no frames</a>]</span></td></tr> </table> </td> </tr> </table> <!-- ==================== CLASS DESCRIPTION ==================== --> <h1 class="epydoc">Class FastqRandomAccess</h1><p class="nomargin-top"><span class="codelink"><a href="Bio.SeqIO._index-pysrc.html#FastqRandomAccess">source code</a></span></p> <pre class="base-tree"> object --+ | <a href="Bio.SeqIO._index.SeqFileRandomAccess-class.html">SeqFileRandomAccess</a> --+ | <strong class="uidshort">FastqRandomAccess</strong> </pre> <hr /> <p>Random access to a FASTQ file (any supported variant).</p> <p>With FASTQ the records all start with a "@" line, but so can quality lines. Note this will cope with line-wrapped FASTQ files.</p> <!-- ==================== INSTANCE METHODS ==================== --> <a name="section-InstanceMethods"></a> <table class="summary" border="1" cellpadding="3" cellspacing="0" width="100%" bgcolor="white"> <tr bgcolor="#70b0f0" class="table-header"> <td colspan="2" class="table-header"> <table border="0" cellpadding="0" cellspacing="0" width="100%"> <tr valign="top"> <td align="left"><span class="table-header">Instance Methods</span></td> <td align="right" valign="top" ><span class="options">[<a href="#section-InstanceMethods" class="privatelink" onclick="toggle_private();" >hide private</a>]</span></td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a href="Bio.SeqIO._index.FastqRandomAccess-class.html#__iter__" class="summary-sig-name">__iter__</a>(<span class="summary-sig-arg">self</span>)</span><br /> Returns (id,offset) tuples.</td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.SeqIO._index-pysrc.html#FastqRandomAccess.__iter__">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a href="Bio.SeqIO._index.FastqRandomAccess-class.html#get_raw" class="summary-sig-name">get_raw</a>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">offset</span>)</span><br /> Similar to the get method, but returns the record as a raw string.</td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.SeqIO._index-pysrc.html#FastqRandomAccess.get_raw">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td colspan="2" class="summary"> <p class="indent-wrapped-lines"><b>Inherited from <code><a href="Bio.SeqIO._index.SeqFileRandomAccess-class.html">SeqFileRandomAccess</a></code></b>: <code><a href="Bio.SeqIO._index.SeqFileRandomAccess-class.html#__init__">__init__</a></code>, <code><a href="Bio.SeqIO._index.SeqFileRandomAccess-class.html#get">get</a></code> </p> <p class="indent-wrapped-lines"><b>Inherited from <code>object</code></b>: <code>__delattr__</code>, <code>__format__</code>, <code>__getattribute__</code>, <code>__hash__</code>, <code>__new__</code>, <code>__reduce__</code>, <code>__reduce_ex__</code>, <code>__repr__</code>, <code>__setattr__</code>, <code>__sizeof__</code>, <code>__str__</code>, <code>__subclasshook__</code> </p> </td> </tr> </table> <!-- ==================== PROPERTIES ==================== --> <a name="section-Properties"></a> <table class="summary" border="1" cellpadding="3" cellspacing="0" width="100%" bgcolor="white"> <tr bgcolor="#70b0f0" class="table-header"> <td colspan="2" class="table-header"> <table border="0" cellpadding="0" cellspacing="0" width="100%"> <tr valign="top"> <td align="left"><span class="table-header">Properties</span></td> <td align="right" valign="top" ><span class="options">[<a href="#section-Properties" class="privatelink" onclick="toggle_private();" >hide private</a>]</span></td> </tr> </table> </td> </tr> <tr> <td colspan="2" class="summary"> <p class="indent-wrapped-lines"><b>Inherited from <code>object</code></b>: <code>__class__</code> </p> </td> </tr> </table> <!-- ==================== METHOD DETAILS ==================== --> <a name="section-MethodDetails"></a> <table class="details" border="1" cellpadding="3" cellspacing="0" width="100%" bgcolor="white"> <tr bgcolor="#70b0f0" class="table-header"> <td colspan="2" class="table-header"> <table border="0" cellpadding="0" cellspacing="0" width="100%"> <tr valign="top"> <td align="left"><span class="table-header">Method Details</span></td> <td align="right" valign="top" ><span class="options">[<a href="#section-MethodDetails" class="privatelink" onclick="toggle_private();" >hide private</a>]</span></td> </tr> </table> </td> </tr> </table> <a name="__iter__"></a> <div> <table class="details" border="1" cellpadding="3" cellspacing="0" width="100%" bgcolor="white"> <tr><td> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr valign="top"><td> <h3 class="epydoc"><span class="sig"><span class="sig-name">__iter__</span>(<span class="sig-arg">self</span>)</span> </h3> </td><td align="right" valign="top" ><span class="codelink"><a href="Bio.SeqIO._index-pysrc.html#FastqRandomAccess.__iter__">source code</a></span> </td> </tr></table> <p>Returns (id,offset) tuples.</p> <dl class="fields"> <dt>Overrides: <a href="Bio.SeqIO._index.SeqFileRandomAccess-class.html#__iter__">SeqFileRandomAccess.__iter__</a> <dd><em class="note">(inherited documentation)</em></dd> </dt> </dl> </td></tr></table> </div> <a name="get_raw"></a> <div> <table class="details" border="1" cellpadding="3" cellspacing="0" width="100%" bgcolor="white"> <tr><td> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr valign="top"><td> <h3 class="epydoc"><span class="sig"><span class="sig-name">get_raw</span>(<span class="sig-arg">self</span>, <span class="sig-arg">offset</span>)</span> </h3> </td><td align="right" valign="top" ><span class="codelink"><a href="Bio.SeqIO._index-pysrc.html#FastqRandomAccess.get_raw">source code</a></span> </td> </tr></table> <p>Similar to the get method, but returns the record as a raw string.</p> <dl class="fields"> <dt>Overrides: <a href="Bio.SeqIO._index.SeqFileRandomAccess-class.html#get_raw">SeqFileRandomAccess.get_raw</a> </dt> </dl> </td></tr></table> </div> <br /> <!-- ==================== NAVIGATION BAR ==================== --> <table class="navbar" border="0" width="100%" cellpadding="0" bgcolor="#a0c0ff" cellspacing="0"> <tr valign="middle"> <!-- Tree link --> <th> <a 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