<?xml version="1.0" encoding="ascii"?>
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
"DTD/xhtml1-transitional.dtd">
<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
<head>
<title>Identifier Index</title>
<link rel="stylesheet" href="epydoc.css" type="text/css" />
<script type="text/javascript" src="epydoc.js"></script>
</head>
<body bgcolor="white" text="black" link="blue" vlink="#204080"
alink="#204080">
<!-- ==================== NAVIGATION BAR ==================== -->
<table class="navbar" border="0" width="100%" cellpadding="0"
bgcolor="#a0c0ff" cellspacing="0">
<tr valign="middle">
<!-- Tree link -->
<th> <a
href="module-tree.html">Trees</a> </th>
<!-- Index link -->
<th bgcolor="#70b0f0" class="navbar-select"
> Indices </th>
<!-- Help link -->
<th> <a
href="help.html">Help</a> </th>
<th class="navbar" width="100%"></th>
</tr>
</table>
<table width="100%" cellpadding="0" cellspacing="0">
<tr valign="top">
<td width="100%"> </td>
<td>
<table cellpadding="0" cellspacing="0">
<!-- hide/show private -->
<tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink"
onclick="toggle_private();">hide private</a>]</span></td></tr>
<tr><td align="right"><span class="options"
>[<a href="frames.html" target="_top">frames</a
>] | <a href="identifier-index-W.html"
target="_top">no frames</a>]</span></td></tr>
</table>
</td>
</tr>
</table>
<table border="0" width="100%">
<tr valign="bottom"><td>
<h1 class="epydoc">Identifier Index</h1>
</td><td>
[
<a href="identifier-index-A.html">A</a>
<a href="identifier-index-B.html">B</a>
<a href="identifier-index-C.html">C</a>
<a href="identifier-index-D.html">D</a>
<a href="identifier-index-E.html">E</a>
<a href="identifier-index-F.html">F</a>
<a href="identifier-index-G.html">G</a>
<a href="identifier-index-H.html">H</a>
<a href="identifier-index-I.html">I</a>
<a href="identifier-index-J.html">J</a>
<a href="identifier-index-K.html">K</a>
<a href="identifier-index-L.html">L</a>
<a href="identifier-index-M.html">M</a>
<a href="identifier-index-N.html">N</a>
<a href="identifier-index-O.html">O</a>
<a href="identifier-index-P.html">P</a>
<a href="identifier-index-Q.html">Q</a>
<a href="identifier-index-R.html">R</a>
<a href="identifier-index-S.html">S</a>
<a href="identifier-index-T.html">T</a>
<a href="identifier-index-U.html">U</a>
<a href="identifier-index-V.html">V</a>
<a href="identifier-index-W.html">W</a>
<a href="identifier-index-X.html">X</a>
<a href="identifier-index-Y.html">Y</a>
<a href="identifier-index-Z.html">Z</a>
<a href="identifier-index-_.html">_</a>
]
</td></table>
<table border="0" width="100%">
<tr valign="top"><td valign="top" width="1%"><h2 class="epydoc"><a name="W">W</a></h2></td>
<td valign="top">
<table class="link-index" width="100%" border="1">
<tr>
<td width="33%" class="link-index"><a href="Bio.Sequencing.Ace.wa-class.html">wa</a><br />
<span class="index-where">(in <a href="Bio.Sequencing.Ace-module.html">Bio.Sequencing.Ace</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Phylo.PhyloXMLIO-module.html#write">write()</a><br />
<span class="index-where">(in <a href="Bio.Phylo.PhyloXMLIO-module.html">Bio.Phylo.PhyloXMLIO</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.AlignIO.EmbossIO.EmbossWriter-class.html#write_header">write_header()</a><br />
<span class="index-where">(in <a href="Bio.AlignIO.EmbossIO.EmbossWriter-class.html">EmbossWriter</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Emboss.Applications.WaterCommandline-class.html">WaterCommandline</a><br />
<span class="index-where">(in <a href="Bio.Emboss.Applications-module.html">Bio.Emboss.Applications</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Phylo._io-module.html#write">write()</a><br />
<span class="index-where">(in <a href="Bio.Phylo._io-module.html" onclick="show_private();">Bio.Phylo._io</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.AlignIO.Interfaces.SequentialAlignmentWriter-class.html#write_header">write_header()</a><br />
<span class="index-where">(in <a href="Bio.AlignIO.Interfaces.SequentialAlignmentWriter-class.html">SequentialAlignmentWriter</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Motif._Motif.Motif-class.html#weblogo">weblogo()</a><br />
<span class="index-where">(in <a href="Bio.Motif._Motif.Motif-class.html">Motif</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SeqIO-module.html#write">write()</a><br />
<span class="index-where">(in <a href="Bio.SeqIO-module.html">Bio.SeqIO</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.NMR.xpktools.Peaklist-class.html#write_header">write_header()</a><br />
<span class="index-where">(in <a href="Bio.NMR.xpktools.Peaklist-class.html">Peaklist</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Nexus.Nexus.Nexus-class.html#weighted_stepmatrix">weighted_stepmatrix()</a><br />
<span class="index-where">(in <a href="Bio.Nexus.Nexus.Nexus-class.html">Nexus</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.AlignIO.ClustalIO.ClustalWriter-class.html#write_alignment">write_alignment()</a><br />
<span class="index-where">(in <a href="Bio.AlignIO.ClustalIO.ClustalWriter-class.html">ClustalWriter</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SeqIO.Interfaces.SequentialSequenceWriter-class.html#write_header">write_header()</a><br />
<span class="index-where">(in <a href="Bio.SeqIO.Interfaces.SequentialSequenceWriter-class.html">SequentialSequenceWriter</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Nexus.Nexus.StepMatrix-class.html#weighting">weighting()</a><br />
<span class="index-where">(in <a href="Bio.Nexus.Nexus.StepMatrix-class.html">StepMatrix</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.AlignIO.EmbossIO.EmbossWriter-class.html#write_alignment">write_alignment()</a><br />
<span class="index-where">(in <a href="Bio.AlignIO.EmbossIO.EmbossWriter-class.html">EmbossWriter</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SeqIO.SeqXmlIO.SeqXmlWriter-class.html#write_header">write_header()</a><br />
<span class="index-where">(in <a href="Bio.SeqIO.SeqXmlIO.SeqXmlWriter-class.html">SeqXmlWriter</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.GenBank._FeatureConsumer-class.html#wgs">wgs()</a><br />
<span class="index-where">(in <a href="Bio.GenBank._FeatureConsumer-class.html">_FeatureConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.AlignIO.Interfaces.SequentialAlignmentWriter-class.html#write_alignment">write_alignment()</a><br />
<span class="index-where">(in <a href="Bio.AlignIO.Interfaces.SequentialAlignmentWriter-class.html">SequentialAlignmentWriter</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SeqIO.SffIO.SffWriter-class.html#write_header">write_header()</a><br />
<span class="index-where">(in <a href="Bio.SeqIO.SffIO.SffWriter-class.html">SffWriter</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.GenBank._RecordConsumer-class.html#wgs">wgs()</a><br />
<span class="index-where">(in <a href="Bio.GenBank._RecordConsumer-class.html">_RecordConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.AlignIO.NexusIO.NexusWriter-class.html#write_alignment">write_alignment()</a><br />
<span class="index-where">(in <a href="Bio.AlignIO.NexusIO.NexusWriter-class.html">NexusWriter</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SCOP.Scop-class.html#write_hie">write_hie()</a><br />
<span class="index-where">(in <a href="Bio.SCOP.Scop-class.html">Scop</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Nexus.Nexus-module.html#WHITESPACE">WHITESPACE</a><br />
<span class="index-where">(in <a href="Bio.Nexus.Nexus-module.html">Bio.Nexus.Nexus</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.AlignIO.PhylipIO.PhylipWriter-class.html#write_alignment">write_alignment()</a><br />
<span class="index-where">(in <a href="Bio.AlignIO.PhylipIO.PhylipWriter-class.html">PhylipWriter</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SCOP.Scop-class.html#write_hie_sql">write_hie_sql()</a><br />
<span class="index-where">(in <a href="Bio.SCOP.Scop-class.html">Scop</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Phylo.PhyloXMLIO.Writer-class.html#width">width()</a><br />
<span class="index-where">(in <a href="Bio.Phylo.PhyloXMLIO.Writer-class.html">Writer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.AlignIO.PhylipIO.RelaxedPhylipWriter-class.html#write_alignment">write_alignment()</a><br />
<span class="index-where">(in <a href="Bio.AlignIO.PhylipIO.RelaxedPhylipWriter-class.html">RelaxedPhylipWriter</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Nexus.Nexus.Nexus-class.html#write_nexus_data">write_nexus_data()</a><br />
<span class="index-where">(in <a href="Bio.Nexus.Nexus.Nexus-class.html">Nexus</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Blast.NCBIStandalone._ParametersConsumer-class.html#window_size">window_size()</a><br />
<span class="index-where">(in <a href="Bio.Blast.NCBIStandalone._ParametersConsumer-class.html" onclick="show_private();">_ParametersConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.AlignIO.StockholmIO.StockholmWriter-class.html#write_alignment">write_alignment()</a><br />
<span class="index-where">(in <a href="Bio.AlignIO.StockholmIO.StockholmWriter-class.html">StockholmWriter</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Nexus.Nexus.Nexus-class.html#write_nexus_data_partitions">write_nexus_data_partitions()</a><br />
<span class="index-where">(in <a href="Bio.Nexus.Nexus.Nexus-class.html">Nexus</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Wise-module.html">Wise</a><br />
<span class="index-where">(in <a href="Bio-module.html">Bio</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SCOP.Scop-class.html#write_cla">write_cla()</a><br />
<span class="index-where">(in <a href="Bio.SCOP.Scop-class.html">Scop</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SeqIO.FastaIO.FastaWriter-class.html#write_record">write_record()</a><br />
<span class="index-where">(in <a href="Bio.SeqIO.FastaIO.FastaWriter-class.html">FastaWriter</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Restriction.Restriction.Analysis-class.html#with_N_sites">with_N_sites()</a><br />
<span class="index-where">(in <a href="Bio.Restriction.Restriction.Analysis-class.html">Analysis</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SCOP.Scop-class.html#write_cla_sql">write_cla_sql()</a><br />
<span class="index-where">(in <a href="Bio.SCOP.Scop-class.html">Scop</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SeqIO.InsdcIO.EmblWriter-class.html#write_record">write_record()</a><br />
<span class="index-where">(in <a href="Bio.SeqIO.InsdcIO.EmblWriter-class.html">EmblWriter</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Restriction.Restriction.Analysis-class.html#with_name">with_name()</a><br />
<span class="index-where">(in <a href="Bio.Restriction.Restriction.Analysis-class.html">Analysis</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Phylo.PAML._paml.Paml-class.html#write_ctl_file">write_ctl_file()</a><br />
<span class="index-where">(in <a href="Bio.Phylo.PAML._paml.Paml-class.html">Paml</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SeqIO.InsdcIO.GenBankWriter-class.html#write_record">write_record()</a><br />
<span class="index-where">(in <a href="Bio.SeqIO.InsdcIO.GenBankWriter-class.html">GenBankWriter</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Restriction.Restriction.Analysis-class.html#with_number_list">with_number_list()</a><br />
<span class="index-where">(in <a href="Bio.Restriction.Restriction.Analysis-class.html">Analysis</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Phylo.PAML.baseml.Baseml-class.html#write_ctl_file">write_ctl_file()</a><br />
<span class="index-where">(in <a href="Bio.Phylo.PAML.baseml.Baseml-class.html">Baseml</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SeqIO.Interfaces.SequentialSequenceWriter-class.html#write_record">write_record()</a><br />
<span class="index-where">(in <a href="Bio.SeqIO.Interfaces.SequentialSequenceWriter-class.html">SequentialSequenceWriter</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Restriction.Restriction.Analysis-class.html#with_site_size">with_site_size()</a><br />
<span class="index-where">(in <a href="Bio.Restriction.Restriction.Analysis-class.html">Analysis</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Phylo.PAML.codeml.Codeml-class.html#write_ctl_file">write_ctl_file()</a><br />
<span class="index-where">(in <a href="Bio.Phylo.PAML.codeml.Codeml-class.html">Codeml</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SeqIO.PhdIO.PhdWriter-class.html#write_record">write_record()</a><br />
<span class="index-where">(in <a href="Bio.SeqIO.PhdIO.PhdWriter-class.html">PhdWriter</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Restriction.Restriction.Analysis-class.html#with_sites">with_sites()</a><br />
<span class="index-where">(in <a href="Bio.Restriction.Restriction.Analysis-class.html">Analysis</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Phylo.PAML.yn00.Yn00-class.html#write_ctl_file">write_ctl_file()</a><br />
<span class="index-where">(in <a href="Bio.Phylo.PAML.yn00.Yn00-class.html">Yn00</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SeqIO.QualityIO.FastqIlluminaWriter-class.html#write_record">write_record()</a><br />
<span class="index-where">(in <a href="Bio.SeqIO.QualityIO.FastqIlluminaWriter-class.html">FastqIlluminaWriter</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.SeqFeature.WithinPosition-class.html">WithinPosition</a><br />
<span class="index-where">(in <a href="Bio.SeqFeature-module.html">Bio.SeqFeature</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SCOP.Scop-class.html#write_des">write_des()</a><br />
<span class="index-where">(in <a href="Bio.SCOP.Scop-class.html">Scop</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SeqIO.QualityIO.FastqPhredWriter-class.html#write_record">write_record()</a><br />
<span class="index-where">(in <a href="Bio.SeqIO.QualityIO.FastqPhredWriter-class.html">FastqPhredWriter</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Restriction.Restriction.Analysis-class.html#without_site">without_site()</a><br />
<span class="index-where">(in <a href="Bio.Restriction.Restriction.Analysis-class.html">Analysis</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SCOP.Scop-class.html#write_des_sql">write_des_sql()</a><br />
<span class="index-where">(in <a href="Bio.SCOP.Scop-class.html">Scop</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SeqIO.QualityIO.FastqSolexaWriter-class.html#write_record">write_record()</a><br />
<span class="index-where">(in <a href="Bio.SeqIO.QualityIO.FastqSolexaWriter-class.html">FastqSolexaWriter</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Sequencing.Ace.wr-class.html">wr</a><br />
<span class="index-where">(in <a href="Bio.Sequencing.Ace-module.html">Bio.Sequencing.Ace</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.AlignIO.Interfaces.AlignmentWriter-class.html#write_file">write_file()</a><br />
<span class="index-where">(in <a href="Bio.AlignIO.Interfaces.AlignmentWriter-class.html">AlignmentWriter</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SeqIO.QualityIO.QualPhredWriter-class.html#write_record">write_record()</a><br />
<span class="index-where">(in <a href="Bio.SeqIO.QualityIO.QualPhredWriter-class.html">QualPhredWriter</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Affy.CelFile-module.html#WRAP">WRAP</a><br />
<span class="index-where">(in <a href="Bio.Affy.CelFile-module.html">Bio.Affy.CelFile</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.AlignIO.Interfaces.SequentialAlignmentWriter-class.html#write_file">write_file()</a><br />
<span class="index-where">(in <a href="Bio.AlignIO.Interfaces.SequentialAlignmentWriter-class.html">SequentialAlignmentWriter</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SeqIO.SeqXmlIO.SeqXmlWriter-class.html#write_record">write_record()</a><br />
<span class="index-where">(in <a href="Bio.SeqIO.SeqXmlIO.SeqXmlWriter-class.html">SeqXmlWriter</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Crystal-module.html#wrap_line">wrap_line()</a><br />
<span class="index-where">(in <a href="Bio.Crystal-module.html">Bio.Crystal</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.AlignIO.NexusIO.NexusWriter-class.html#write_file">write_file()</a><br />
<span class="index-where">(in <a href="Bio.AlignIO.NexusIO.NexusWriter-class.html">NexusWriter</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SeqIO.SffIO.SffWriter-class.html#write_record">write_record()</a><br />
<span class="index-where">(in <a href="Bio.SeqIO.SffIO.SffWriter-class.html">SffWriter</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.AlignIO-module.html#write">write()</a><br />
<span class="index-where">(in <a href="Bio.AlignIO-module.html">Bio.AlignIO</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SeqIO.Interfaces.SequenceWriter-class.html#write_file">write_file()</a><br />
<span class="index-where">(in <a href="Bio.SeqIO.Interfaces.SequenceWriter-class.html">SequenceWriter</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SeqIO.TabIO.TabWriter-class.html#write_record">write_record()</a><br />
<span class="index-where">(in <a href="Bio.SeqIO.TabIO.TabWriter-class.html">TabWriter</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Graphics.GenomeDiagram._Diagram.Diagram-class.html#write">write()</a><br />
<span class="index-where">(in <a href="Bio.Graphics.GenomeDiagram._Diagram.Diagram-class.html">Diagram</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SeqIO.Interfaces.SequentialSequenceWriter-class.html#write_file">write_file()</a><br />
<span class="index-where">(in <a href="Bio.SeqIO.Interfaces.SequentialSequenceWriter-class.html">SequentialSequenceWriter</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SeqIO.Interfaces.SequentialSequenceWriter-class.html#write_records">write_records()</a><br />
<span class="index-where">(in <a href="Bio.SeqIO.Interfaces.SequentialSequenceWriter-class.html">SequentialSequenceWriter</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.NeuralNetwork.Gene.Pattern.PatternIO-class.html#write">write()</a><br />
<span class="index-where">(in <a href="Bio.NeuralNetwork.Gene.Pattern.PatternIO-class.html">PatternIO</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SeqIO.SffIO.SffWriter-class.html#write_file">write_file()</a><br />
<span class="index-where">(in <a href="Bio.SeqIO.SffIO.SffWriter-class.html">SffWriter</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.NeuralNetwork.Gene.Pattern.PatternIO-class.html#write_seq">write_seq()</a><br />
<span class="index-where">(in <a href="Bio.NeuralNetwork.Gene.Pattern.PatternIO-class.html">PatternIO</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Phylo.NewickIO.Writer-class.html#write">write()</a><br />
<span class="index-where">(in <a href="Bio.Phylo.NewickIO.Writer-class.html">Writer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.AlignIO.EmbossIO.EmbossWriter-class.html#write_footer">write_footer()</a><br />
<span class="index-where">(in <a href="Bio.AlignIO.EmbossIO.EmbossWriter-class.html">EmbossWriter</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Graphics.GenomeDiagram._Diagram.Diagram-class.html#write_to_string">write_to_string()</a><br />
<span class="index-where">(in <a href="Bio.Graphics.GenomeDiagram._Diagram.Diagram-class.html">Diagram</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Phylo.NewickIO-module.html#write">write()</a><br />
<span class="index-where">(in <a href="Bio.Phylo.NewickIO-module.html">Bio.Phylo.NewickIO</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.AlignIO.Interfaces.SequentialAlignmentWriter-class.html#write_footer">write_footer()</a><br />
<span class="index-where">(in <a href="Bio.AlignIO.Interfaces.SequentialAlignmentWriter-class.html">SequentialAlignmentWriter</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Phylo.NewickIO.Writer-class.html">Writer</a><br />
<span class="index-where">(in <a href="Bio.Phylo.NewickIO-module.html">Bio.Phylo.NewickIO</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Phylo.NexusIO-module.html#write">write()</a><br />
<span class="index-where">(in <a href="Bio.Phylo.NexusIO-module.html">Bio.Phylo.NexusIO</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SeqIO.Interfaces.SequentialSequenceWriter-class.html#write_footer">write_footer()</a><br />
<span class="index-where">(in <a href="Bio.SeqIO.Interfaces.SequentialSequenceWriter-class.html">SequentialSequenceWriter</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Phylo.PhyloXMLIO.Writer-class.html">Writer</a><br />
<span class="index-where">(in <a href="Bio.Phylo.PhyloXMLIO-module.html">Bio.Phylo.PhyloXMLIO</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Phylo.PhyloXMLIO.Writer-class.html#write">write()</a><br />
<span class="index-where">(in <a href="Bio.Phylo.PhyloXMLIO.Writer-class.html">Writer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SeqIO.SeqXmlIO.SeqXmlWriter-class.html#write_footer">write_footer()</a><br />
<span class="index-where">(in <a href="Bio.SeqIO.SeqXmlIO.SeqXmlWriter-class.html">SeqXmlWriter</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SCOP.Astral-class.html#writeToSQL">writeToSQL()</a><br />
<span class="index-where">(in <a href="Bio.SCOP.Astral-class.html">Astral</a>)</span></td>
</tr>
</table>
</td></tr>
</table>
<br /><br /><!-- ==================== NAVIGATION BAR ==================== -->
<table class="navbar" border="0" width="100%" cellpadding="0"
bgcolor="#a0c0ff" cellspacing="0">
<tr valign="middle">
<!-- Tree link -->
<th> <a
href="module-tree.html">Trees</a> </th>
<!-- Index link -->
<th bgcolor="#70b0f0" class="navbar-select"
> Indices </th>
<!-- Help link -->
<th> <a
href="help.html">Help</a> </th>
<th class="navbar" width="100%"></th>
</tr>
</table>
<table border="0" cellpadding="0" cellspacing="0" width="100%%">
<tr>
<td align="left" class="footer">
Generated by Epydoc 3.0.1 on Thu Aug 18 18:19:01 2011
</td>
<td align="right" class="footer">
<a target="mainFrame" href="http://epydoc.sourceforge.net"
>http://epydoc.sourceforge.net</a>
</td>
</tr>
</table>
<script type="text/javascript">
<!--
// Private objects are initially displayed (because if
// javascript is turned off then we want them to be
// visible); but by default, we want to hide them. So hide
// them unless we have a cookie that says to show them.
checkCookie();
// -->
</script>
</body>
</html>
