<?xml version="1.0" encoding="ascii"?> <!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "DTD/xhtml1-transitional.dtd"> <html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en"> <head> <title>MarkovModel</title> <link rel="stylesheet" href="epydoc.css" type="text/css" /> <script type="text/javascript" src="epydoc.js"></script> </head> <body bgcolor="white" text="black" link="blue" vlink="#204080" alink="#204080"> <h1 class="toc">Module MarkovModel</h1> <hr /> <h2 class="toc">Classes</h2> <a target="mainFrame" href="Bio.MarkovModel.MarkovModel-class.html" >MarkovModel</a><br /> <h2 class="toc">Functions</h2> <div class="private"> <a target="mainFrame" href="Bio.MarkovModel-module.html#_argmaxes" >_argmaxes</a><br /> </div> <div class="private"> <a target="mainFrame" href="Bio.MarkovModel-module.html#_backward" >_backward</a><br /> </div> <div class="private"> <a target="mainFrame" href="Bio.MarkovModel-module.html#_baum_welch" >_baum_welch</a><br /> </div> <div class="private"> <a target="mainFrame" href="Bio.MarkovModel-module.html#_baum_welch_one" >_baum_welch_one</a><br /> </div> <div class="private"> <a target="mainFrame" href="Bio.MarkovModel-module.html#_copy_and_check" >_copy_and_check</a><br /> </div> <div class="private"> <a target="mainFrame" href="Bio.MarkovModel-module.html#_exp_logsum" >_exp_logsum</a><br /> </div> <div class="private"> <a target="mainFrame" href="Bio.MarkovModel-module.html#_forward" >_forward</a><br /> </div> <div class="private"> <a target="mainFrame" href="Bio.MarkovModel-module.html#_logsum" >_logsum</a><br /> </div> <div class="private"> <a target="mainFrame" href="Bio.MarkovModel-module.html#_logvecadd" >_logvecadd</a><br /> </div> <div class="private"> <a target="mainFrame" href="Bio.MarkovModel-module.html#_mle" >_mle</a><br /> </div> <div class="private"> <a target="mainFrame" href="Bio.MarkovModel-module.html#_normalize" >_normalize</a><br /> </div> <div class="private"> <a target="mainFrame" href="Bio.MarkovModel-module.html#_random_norm" >_random_norm</a><br /> </div> <div class="private"> <a target="mainFrame" href="Bio.MarkovModel-module.html#_readline_and_check_start" >_readline_and_check_start</a><br /> </div> <div class="private"> <a target="mainFrame" href="Bio.MarkovModel-module.html#_uniform_norm" >_uniform_norm</a><br /> </div> <div class="private"> <a target="mainFrame" href="Bio.MarkovModel-module.html#_viterbi" >_viterbi</a><br /> </div> <a target="mainFrame" href="Bio.MarkovModel-module.html#find_states" >find_states</a><br /> <a target="mainFrame" href="Bio.MarkovModel-module.html#itemindex" >itemindex</a><br /> <a target="mainFrame" href="Bio.MarkovModel-module.html#load" >load</a><br /> <a target="mainFrame" href="Bio.MarkovModel-module.html#save" >save</a><br /> <a target="mainFrame" href="Bio.MarkovModel-module.html#train_bw" >train_bw</a><br /> <a target="mainFrame" href="Bio.MarkovModel-module.html#train_visible" >train_visible</a><br /> <h2 class="toc">Variables</h2> <a target="mainFrame" href="Bio.MarkovModel-module.html#LOG0" >LOG0</a><br /> <a target="mainFrame" href="Bio.MarkovModel-module.html#MAX_ITERATIONS" >MAX_ITERATIONS</a><br /> <a target="mainFrame" href="Bio.MarkovModel-module.html#VERY_SMALL_NUMBER" >VERY_SMALL_NUMBER</a><br /> <a target="mainFrame" href="Bio.MarkovModel-module.html#__package__" >__package__</a><br /> <a target="mainFrame" href="Bio.MarkovModel-module.html#logaddexp" >logaddexp</a><br /><hr /> <span class="options">[<a href="javascript:void(0);" class="privatelink" onclick="toggle_private();">hide private</a>]</span> <script type="text/javascript"> <!-- // Private objects are initially displayed (because if // javascript is turned off then we want them to be // visible); but by default, we want to hide them. So hide // them unless we have a cookie that says to show them. checkCookie(); // --> </script> </body> </html>