Sophie

Sophie

distrib > * > cooker > x86_64 > by-pkgid > 635dc0b7819f4e396a16d64269572c71 > files > 2133

biopython-doc-1.58-1.x86_64.rpm

<?xml version="1.0" encoding="ascii"?>
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
          "DTD/xhtml1-transitional.dtd">
<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
<head>
  <title>MarkovModel</title>
  <link rel="stylesheet" href="epydoc.css" type="text/css" />
  <script type="text/javascript" src="epydoc.js"></script>
</head>

<body bgcolor="white" text="black" link="blue" vlink="#204080"
      alink="#204080">
<h1 class="toc">Module MarkovModel</h1>
<hr />
  <h2 class="toc">Classes</h2>
    <a target="mainFrame" href="Bio.MarkovModel.MarkovModel-class.html"
     >MarkovModel</a><br />  <h2 class="toc">Functions</h2>
  <div class="private">
    <a target="mainFrame" href="Bio.MarkovModel-module.html#_argmaxes"
     >_argmaxes</a><br />  </div>
  <div class="private">
    <a target="mainFrame" href="Bio.MarkovModel-module.html#_backward"
     >_backward</a><br />  </div>
  <div class="private">
    <a target="mainFrame" href="Bio.MarkovModel-module.html#_baum_welch"
     >_baum_welch</a><br />  </div>
  <div class="private">
    <a target="mainFrame" href="Bio.MarkovModel-module.html#_baum_welch_one"
     >_baum_welch_one</a><br />  </div>
  <div class="private">
    <a target="mainFrame" href="Bio.MarkovModel-module.html#_copy_and_check"
     >_copy_and_check</a><br />  </div>
  <div class="private">
    <a target="mainFrame" href="Bio.MarkovModel-module.html#_exp_logsum"
     >_exp_logsum</a><br />  </div>
  <div class="private">
    <a target="mainFrame" href="Bio.MarkovModel-module.html#_forward"
     >_forward</a><br />  </div>
  <div class="private">
    <a target="mainFrame" href="Bio.MarkovModel-module.html#_logsum"
     >_logsum</a><br />  </div>
  <div class="private">
    <a target="mainFrame" href="Bio.MarkovModel-module.html#_logvecadd"
     >_logvecadd</a><br />  </div>
  <div class="private">
    <a target="mainFrame" href="Bio.MarkovModel-module.html#_mle"
     >_mle</a><br />  </div>
  <div class="private">
    <a target="mainFrame" href="Bio.MarkovModel-module.html#_normalize"
     >_normalize</a><br />  </div>
  <div class="private">
    <a target="mainFrame" href="Bio.MarkovModel-module.html#_random_norm"
     >_random_norm</a><br />  </div>
  <div class="private">
    <a target="mainFrame" href="Bio.MarkovModel-module.html#_readline_and_check_start"
     >_readline_and_check_start</a><br />  </div>
  <div class="private">
    <a target="mainFrame" href="Bio.MarkovModel-module.html#_uniform_norm"
     >_uniform_norm</a><br />  </div>
  <div class="private">
    <a target="mainFrame" href="Bio.MarkovModel-module.html#_viterbi"
     >_viterbi</a><br />  </div>
    <a target="mainFrame" href="Bio.MarkovModel-module.html#find_states"
     >find_states</a><br />    <a target="mainFrame" href="Bio.MarkovModel-module.html#itemindex"
     >itemindex</a><br />    <a target="mainFrame" href="Bio.MarkovModel-module.html#load"
     >load</a><br />    <a target="mainFrame" href="Bio.MarkovModel-module.html#save"
     >save</a><br />    <a target="mainFrame" href="Bio.MarkovModel-module.html#train_bw"
     >train_bw</a><br />    <a target="mainFrame" href="Bio.MarkovModel-module.html#train_visible"
     >train_visible</a><br />  <h2 class="toc">Variables</h2>
    <a target="mainFrame" href="Bio.MarkovModel-module.html#LOG0"
     >LOG0</a><br />    <a target="mainFrame" href="Bio.MarkovModel-module.html#MAX_ITERATIONS"
     >MAX_ITERATIONS</a><br />    <a target="mainFrame" href="Bio.MarkovModel-module.html#VERY_SMALL_NUMBER"
     >VERY_SMALL_NUMBER</a><br />    <a target="mainFrame" href="Bio.MarkovModel-module.html#__package__"
     >__package__</a><br />    <a target="mainFrame" href="Bio.MarkovModel-module.html#logaddexp"
     >logaddexp</a><br /><hr />
<span class="options">[<a href="javascript:void(0);" class="privatelink"
    onclick="toggle_private();">hide&nbsp;private</a>]</span>

<script type="text/javascript">
  <!--
  // Private objects are initially displayed (because if
  // javascript is turned off then we want them to be
  // visible); but by default, we want to hide them.  So hide
  // them unless we have a cookie that says to show them.
  checkCookie();
  // -->
</script>
</body>
</html>