<?xml version="1.0" encoding="ascii"?> <!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "DTD/xhtml1-transitional.dtd"> <html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en"> <head> <title>MEME</title> <link rel="stylesheet" href="epydoc.css" type="text/css" /> <script type="text/javascript" src="epydoc.js"></script> </head> <body bgcolor="white" text="black" link="blue" vlink="#204080" alink="#204080"> <h1 class="toc">Module MEME</h1> <hr /> <h2 class="toc">Classes</h2> <a target="mainFrame" href="Bio.Motif.Parsers.MEME.MEMEInstance-class.html" >MEMEInstance</a><br /> <a target="mainFrame" href="Bio.Motif.Parsers.MEME.MEMEMotif-class.html" >MEMEMotif</a><br /> <a target="mainFrame" href="Bio.Motif.Parsers.MEME.MEMERecord-class.html" >MEMERecord</a><br /> <h2 class="toc">Functions</h2> <div class="private"> <a target="mainFrame" href="Bio.Motif.Parsers.MEME-module.html#__create_motif" >__create_motif</a><br /> </div> <div class="private"> <a target="mainFrame" href="Bio.Motif.Parsers.MEME-module.html#__read_alphabet" >__read_alphabet</a><br /> </div> <div class="private"> <a target="mainFrame" href="Bio.Motif.Parsers.MEME-module.html#__read_command" >__read_command</a><br /> </div> <div class="private"> <a target="mainFrame" href="Bio.Motif.Parsers.MEME-module.html#__read_datafile" >__read_datafile</a><br /> </div> <div class="private"> <a target="mainFrame" href="Bio.Motif.Parsers.MEME-module.html#__read_motif_name" >__read_motif_name</a><br /> </div> <div class="private"> <a target="mainFrame" href="Bio.Motif.Parsers.MEME-module.html#__read_motif_sequences" >__read_motif_sequences</a><br /> </div> <div class="private"> <a target="mainFrame" href="Bio.Motif.Parsers.MEME-module.html#__read_sequence_names" >__read_sequence_names</a><br /> </div> <div class="private"> <a target="mainFrame" href="Bio.Motif.Parsers.MEME-module.html#__read_version" >__read_version</a><br /> </div> <div class="private"> <a target="mainFrame" href="Bio.Motif.Parsers.MEME-module.html#__skip_unused_lines" >__skip_unused_lines</a><br /> </div> <a target="mainFrame" href="Bio.Motif.Parsers.MEME-module.html#read" >read</a><br /> <h2 class="toc">Variables</h2> <a target="mainFrame" href="Bio.Motif.Parsers.MEME-module.html#__package__" >__package__</a><br /><hr /> <span class="options">[<a href="javascript:void(0);" class="privatelink" onclick="toggle_private();">hide private</a>]</span> <script type="text/javascript"> <!-- // Private objects are initially displayed (because if // javascript is turned off then we want them to be // visible); but by default, we want to hide them. So hide // them unless we have a cookie that says to show them. checkCookie(); // --> </script> </body> </html>