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<a href="Bio-module.html">Package Bio</a> ::
<a href="Bio.Emboss-module.html">Package Emboss</a> ::
Module Applications
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<!-- ==================== MODULE DESCRIPTION ==================== -->
<h1 class="epydoc">Module Applications</h1><p class="nomargin-top"><span class="codelink"><a href="Bio.Emboss.Applications-pysrc.html">source code</a></span></p>
<p>Code to interact with and run various EMBOSS programs.</p>
<p>These classes follow the AbstractCommandline interfaces for running
programs.</p>
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<a href="Bio.Emboss.Applications._EmbossMinimalCommandLine-class.html" class="summary-name" onclick="show_private();">_EmbossMinimalCommandLine</a><br />
Base Commandline object for EMBOSS wrappers (PRIVATE).
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<a href="Bio.Emboss.Applications._EmbossCommandLine-class.html" class="summary-name" onclick="show_private();">_EmbossCommandLine</a><br />
Base Commandline object for EMBOSS wrappers (PRIVATE).
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<a href="Bio.Emboss.Applications.Primer3Commandline-class.html" class="summary-name">Primer3Commandline</a><br />
Commandline object for the Primer3 interface from EMBOSS.
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<a href="Bio.Emboss.Applications.PrimerSearchCommandline-class.html" class="summary-name">PrimerSearchCommandline</a><br />
Commandline object for the primersearch program from EMBOSS.
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<a href="Bio.Emboss.Applications.FDNADistCommandline-class.html" class="summary-name">FDNADistCommandline</a><br />
Commandline object for the fdnadist program from EMBOSS.
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<a href="Bio.Emboss.Applications.FTreeDistCommandline-class.html" class="summary-name">FTreeDistCommandline</a><br />
Commandline object for the ftreedist program from EMBOSS.
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<a href="Bio.Emboss.Applications.FNeighborCommandline-class.html" class="summary-name">FNeighborCommandline</a><br />
Commandline object for the fneighbor program from EMBOSS.
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<a href="Bio.Emboss.Applications.FSeqBootCommandline-class.html" class="summary-name">FSeqBootCommandline</a><br />
Commandline object for the fseqboot program from EMBOSS.
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<a href="Bio.Emboss.Applications.FDNAParsCommandline-class.html" class="summary-name">FDNAParsCommandline</a><br />
Commandline object for the fdnapars program from EMBOSS.
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<a href="Bio.Emboss.Applications.FProtParsCommandline-class.html" class="summary-name">FProtParsCommandline</a><br />
Commandline object for the fdnapars program from EMBOSS.
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<a href="Bio.Emboss.Applications.FProtDistCommandline-class.html" class="summary-name">FProtDistCommandline</a><br />
Commandline object for the fprotdist program from EMBOSS.
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<a href="Bio.Emboss.Applications.FConsenseCommandline-class.html" class="summary-name">FConsenseCommandline</a><br />
Commandline object for the fconsense program from EMBOSS.
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<a href="Bio.Emboss.Applications.WaterCommandline-class.html" class="summary-name">WaterCommandline</a><br />
Commandline object for the water program from EMBOSS.
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<a href="Bio.Emboss.Applications.NeedleCommandline-class.html" class="summary-name">NeedleCommandline</a><br />
Commandline object for the needle program from EMBOSS.
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<a href="Bio.Emboss.Applications.FuzznucCommandline-class.html" class="summary-name">FuzznucCommandline</a><br />
Commandline object for the fuzznuc program from EMBOSS.
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<a href="Bio.Emboss.Applications.Est2GenomeCommandline-class.html" class="summary-name">Est2GenomeCommandline</a><br />
Commandline object for the est2genome program from EMBOSS.
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<a href="Bio.Emboss.Applications.ETandemCommandline-class.html" class="summary-name">ETandemCommandline</a><br />
Commandline object for the etandem program from EMBOSS.
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<a href="Bio.Emboss.Applications.EInvertedCommandline-class.html" class="summary-name">EInvertedCommandline</a><br />
Commandline object for the einverted program from EMBOSS.
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<a href="Bio.Emboss.Applications.PalindromeCommandline-class.html" class="summary-name">PalindromeCommandline</a><br />
Commandline object for the palindrome program from EMBOSS.
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<a href="Bio.Emboss.Applications.TranalignCommandline-class.html" class="summary-name">TranalignCommandline</a><br />
Commandline object for the tranalign program from EMBOSS.
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<a href="Bio.Emboss.Applications.DiffseqCommandline-class.html" class="summary-name">DiffseqCommandline</a><br />
Commandline object for the diffseq program from EMBOSS.
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<a href="Bio.Emboss.Applications.IepCommandline-class.html" class="summary-name">IepCommandline</a><br />
Commandline for EMBOSS iep: calculated isoelectric point and
charge.
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<a href="Bio.Emboss.Applications.SeqretCommandline-class.html" class="summary-name">SeqretCommandline</a><br />
Commandline object for the seqret program from EMBOSS.
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<a href="Bio.Emboss.Applications.SeqmatchallCommandline-class.html" class="summary-name">SeqmatchallCommandline</a><br />
Commandline object for the seqmatchall program from EMBOSS
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<!-- ==================== FUNCTIONS ==================== -->
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<td><span class="summary-sig"><a name="_test"></a><span class="summary-sig-name">_test</span>()</span><br />
Run the Bio.Emboss.Applications module doctests.</td>
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<span class="codelink"><a href="Bio.Emboss.Applications-pysrc.html#_test">source code</a></span>
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<a name="__package__"></a><span class="summary-name">__package__</span> = <code title="'Bio.Emboss'"><code class="variable-quote">'</code><code class="variable-string">Bio.Emboss</code><code class="variable-quote">'</code></code>
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