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<a href="Bio-module.html">Package Bio</a> ::
Package ExPASy
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<!-- ==================== PACKAGE DESCRIPTION ==================== -->
<h1 class="epydoc">Package ExPASy</h1><p class="nomargin-top"><span class="codelink"><a href="Bio.ExPASy-pysrc.html">source code</a></span></p>
<p>This module provides code to access resources at ExPASy over the WWW.
http://www.expasy.ch/</p>
<p>Functions: get_prodoc_entry Interface to the get-prodoc-entry CGI
script. get_prosite_entry Interface to the get-prosite-entry CGI script.
get_prosite_raw Interface to the get-prosite-raw CGI script.
get_sprot_raw Interface to the get-sprot-raw CGI script.
sprot_search_ful Interface to the sprot-search-ful CGI script.
sprot_search_de Interface to the sprot-search-de CGI script.</p>
<!-- ==================== SUBMODULES ==================== -->
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<ul class="nomargin">
<li> <strong class="uidlink"><a href="Bio.ExPASy.Enzyme-module.html">Bio.ExPASy.Enzyme</a></strong>: <em class="summary">This module provides code to work with the enzyme.dat file from
Enzyme.</em> </li>
<li> <strong class="uidlink"><a href="Bio.ExPASy.Prodoc-module.html">Bio.ExPASy.Prodoc</a></strong>: <em class="summary">This module provides code to work with the prosite.doc file from
Prosite.</em> </li>
<li> <strong class="uidlink"><a href="Bio.ExPASy.Prosite-module.html">Bio.ExPASy.Prosite</a></strong>: <em class="summary">This module provides code to work with the prosite dat file from
Prosite.</em> </li>
<li> <strong class="uidlink"><a href="Bio.ExPASy.ScanProsite-module.html">Bio.ExPASy.ScanProsite</a></strong> </li>
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<!-- ==================== FUNCTIONS ==================== -->
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<span class="summary-type">handle</span>
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<td><span class="summary-sig"><a href="Bio.ExPASy-module.html#get_prodoc_entry" class="summary-sig-name">get_prodoc_entry</a>(<span class="summary-sig-arg">id</span>,
<span class="summary-sig-arg">cgi</span>=<span class="summary-sig-default">'http://www.expasy.ch/cgi-bin/get-prodoc-entry'</span>)</span><br />
Get a handle to a PRODOC entry at ExPASy in HTML format.</td>
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<span class="codelink"><a href="Bio.ExPASy-pysrc.html#get_prodoc_entry">source code</a></span>
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<span class="summary-type">handle</span>
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<td><span class="summary-sig"><a href="Bio.ExPASy-module.html#get_prosite_entry" class="summary-sig-name">get_prosite_entry</a>(<span class="summary-sig-arg">id</span>,
<span class="summary-sig-arg">cgi</span>=<span class="summary-sig-default">'http://www.expasy.ch/cgi-bin/get-prosite-entry'</span>)</span><br />
Get a handle to a PROSITE entry at ExPASy in HTML format.</td>
<td align="right" valign="top">
<span class="codelink"><a href="Bio.ExPASy-pysrc.html#get_prosite_entry">source code</a></span>
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<span class="summary-type">handle</span>
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<td><span class="summary-sig"><a href="Bio.ExPASy-module.html#get_prosite_raw" class="summary-sig-name">get_prosite_raw</a>(<span class="summary-sig-arg">id</span>,
<span class="summary-sig-arg">cgi</span>=<span class="summary-sig-default">'http://www.expasy.ch/cgi-bin/get-prosite-raw.pl'</span>)</span><br />
Get a handle to a raw PROSITE or PRODOC entry at ExPASy.</td>
<td align="right" valign="top">
<span class="codelink"><a href="Bio.ExPASy-pysrc.html#get_prosite_raw">source code</a></span>
</td>
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<span class="summary-type"> </span>
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<td><span class="summary-sig"><a href="Bio.ExPASy-module.html#get_sprot_raw" class="summary-sig-name">get_sprot_raw</a>(<span class="summary-sig-arg">id</span>)</span><br />
Get a handle to a raw SwissProt entry at ExPASy.</td>
<td align="right" valign="top">
<span class="codelink"><a href="Bio.ExPASy-pysrc.html#get_sprot_raw">source code</a></span>
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<span class="summary-type">handle</span>
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<td><span class="summary-sig"><a name="sprot_search_ful"></a><span class="summary-sig-name">sprot_search_ful</span>(<span class="summary-sig-arg">text</span>,
<span class="summary-sig-arg">make_wild</span>=<span class="summary-sig-default">None</span>,
<span class="summary-sig-arg">swissprot</span>=<span class="summary-sig-default">1</span>,
<span class="summary-sig-arg">trembl</span>=<span class="summary-sig-default">None</span>,
<span class="summary-sig-arg">cgi</span>=<span class="summary-sig-default">'http://www.expasy.ch/cgi-bin/sprot-search-ful'</span>)</span><br />
Search SwissProt by full text.</td>
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<span class="codelink"><a href="Bio.ExPASy-pysrc.html#sprot_search_ful">source code</a></span>
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<span class="summary-type">handle</span>
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<td><span class="summary-sig"><a name="sprot_search_de"></a><span class="summary-sig-name">sprot_search_de</span>(<span class="summary-sig-arg">text</span>,
<span class="summary-sig-arg">swissprot</span>=<span class="summary-sig-default">1</span>,
<span class="summary-sig-arg">trembl</span>=<span class="summary-sig-default">None</span>,
<span class="summary-sig-arg">cgi</span>=<span class="summary-sig-default">'http://www.expasy.ch/cgi-bin/sprot-search-de'</span>)</span><br />
Search SwissProt by name, description, gene name, species, or
organelle.</td>
<td align="right" valign="top">
<span class="codelink"><a href="Bio.ExPASy-pysrc.html#sprot_search_de">source code</a></span>
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<span class="summary-type"> </span>
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<a name="__package__"></a><span class="summary-name">__package__</span> = <code title="'Bio.ExPASy'"><code class="variable-quote">'</code><code class="variable-string">Bio.ExPASy</code><code class="variable-quote">'</code></code>
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<!-- ==================== FUNCTION DETAILS ==================== -->
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<h3 class="epydoc"><span class="sig"><span class="sig-name">get_prodoc_entry</span>(<span class="sig-arg">id</span>,
<span class="sig-arg">cgi</span>=<span class="sig-default">'http://www.expasy.ch/cgi-bin/get-prodoc-entry'</span>)</span>
</h3>
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><span class="codelink"><a href="Bio.ExPASy-pysrc.html#get_prodoc_entry">source code</a></span>
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<p>Get a handle to a PRODOC entry at ExPASy in HTML format.</p>
<p>For a non-existing key XXX, ExPASy returns an HTML-formatted page
containing this line: 'There is no PROSITE documentation entry XXX.
Please try again.'</p>
<dl class="fields">
<dt>Returns: handle</dt>
</dl>
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<a name="get_prosite_entry"></a>
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cellspacing="0" width="100%" bgcolor="white">
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<h3 class="epydoc"><span class="sig"><span class="sig-name">get_prosite_entry</span>(<span class="sig-arg">id</span>,
<span class="sig-arg">cgi</span>=<span class="sig-default">'http://www.expasy.ch/cgi-bin/get-prosite-entry'</span>)</span>
</h3>
</td><td align="right" valign="top"
><span class="codelink"><a href="Bio.ExPASy-pysrc.html#get_prosite_entry">source code</a></span>
</td>
</tr></table>
<p>Get a handle to a PROSITE entry at ExPASy in HTML format.</p>
<p>For a non-existing key XXX, ExPASy returns an HTML-formatted page
containing this line: 'There is currently no PROSITE entry for XXX.
Please try again.'</p>
<dl class="fields">
<dt>Returns: handle</dt>
</dl>
</td></tr></table>
</div>
<a name="get_prosite_raw"></a>
<div>
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cellspacing="0" width="100%" bgcolor="white">
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<h3 class="epydoc"><span class="sig"><span class="sig-name">get_prosite_raw</span>(<span class="sig-arg">id</span>,
<span class="sig-arg">cgi</span>=<span class="sig-default">'http://www.expasy.ch/cgi-bin/get-prosite-raw.pl'</span>)</span>
</h3>
</td><td align="right" valign="top"
><span class="codelink"><a href="Bio.ExPASy-pysrc.html#get_prosite_raw">source code</a></span>
</td>
</tr></table>
<p>Get a handle to a raw PROSITE or PRODOC entry at ExPASy.</p>
<p>For a non-existing key, ExPASy returns nothing.</p>
<dl class="fields">
<dt>Returns: handle</dt>
</dl>
</td></tr></table>
</div>
<a name="get_sprot_raw"></a>
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cellspacing="0" width="100%" bgcolor="white">
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<h3 class="epydoc"><span class="sig"><span class="sig-name">get_sprot_raw</span>(<span class="sig-arg">id</span>)</span>
</h3>
</td><td align="right" valign="top"
><span class="codelink"><a href="Bio.ExPASy-pysrc.html#get_sprot_raw">source code</a></span>
</td>
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<p>Get a handle to a raw SwissProt entry at ExPASy.</p>
<p>For an ID of XXX, fetches http://www.uniprot.org/uniprot/XXX.txt (as
per the http://www.expasy.ch/expasy_urls.html documentation).</p>
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