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<a href="Bio-module.html">Package Bio</a> ::
<a href="Bio.NeuralNetwork-module.html">Package NeuralNetwork</a> ::
<a href="Bio.NeuralNetwork.Gene-module.html">Package Gene</a> ::
<a href="Bio.NeuralNetwork.Gene.Schema-module.html">Module Schema</a> ::
Class SchemaDNAAlphabet
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<h1 class="epydoc">Class SchemaDNAAlphabet</h1><p class="nomargin-top"><span class="codelink"><a href="Bio.NeuralNetwork.Gene.Schema-pysrc.html#SchemaDNAAlphabet">source code</a></span></p>
<pre class="base-tree">
object --+
|
<a href="Bio.Alphabet.Alphabet-class.html">Alphabet.Alphabet</a> --+
|
<strong class="uidshort">SchemaDNAAlphabet</strong>
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<p>Alphabet of a simple Schema for DNA sequences.</p>
<p>This defines a simple alphabet for DNA sequences that has a single
character which can match any other character.</p>
<p>o G,A,T,C - The standard unambiguous DNA alphabet.</p>
<p>o * - Any letter</p>
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<p class="indent-wrapped-lines"><b>Inherited from <code><a href="Bio.Alphabet.Alphabet-class.html">Alphabet.Alphabet</a></code></b>:
<code><a href="Bio.Alphabet.Alphabet-class.html#__repr__">__repr__</a></code>,
<code><a href="Bio.Alphabet.Alphabet-class.html#contains">contains</a></code>
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<div class="private"> <p class="indent-wrapped-lines"><b>Inherited from <code><a href="Bio.Alphabet.Alphabet-class.html">Alphabet.Alphabet</a></code></b> (private):
<code><a href="Bio.Alphabet.Alphabet-class.html#_case_less" onclick="show_private();">_case_less</a></code>,
<code><a href="Bio.Alphabet.Alphabet-class.html#_lower" onclick="show_private();">_lower</a></code>,
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<span class="summary-type"> </span>
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<a name="letters"></a><span class="summary-name">letters</span> = <code title="['G', 'A', 'T', 'C', '*']"><code class="variable-group">[</code><code class="variable-quote">'</code><code class="variable-string">G</code><code class="variable-quote">'</code><code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">A</code><code class="variable-quote">'</code><code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">T</code><code class="variable-quote">'</code><code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">C</code><code class="variable-quote">'</code><code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">*</code><code class="variable-quote">'</code><code class="variable-group">]</code></code>
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<span class="summary-type"> </span>
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<a href="Bio.NeuralNetwork.Gene.Schema.SchemaDNAAlphabet-class.html#alphabet_matches" class="summary-name">alphabet_matches</a> = <code title="{'*': 'GATC', 'A': 'A', 'C': 'C', 'G': 'G', 'T': 'T'}"><code class="variable-group">{</code><code class="variable-quote">'</code><code class="variable-string">*</code><code class="variable-quote">'</code><code class="variable-op">: </code><code class="variable-quote">'</code><code class="variable-string">GATC</code><code class="variable-quote">'</code><code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">A</code><code class="variable-quote">'</code><code class="variable-op">: </code><code class="variable-quote">'</code><code class="variable-string">A</code><code class="variable-quote">'</code><code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">C</code><code class="variable-quote">'</code><code class="variable-op">: </code><code class="variable-quote">'</code><code class="variable-string">C</code><code class="variable-quote">'</code><code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">G</code><code class="variable-quote">'</code><code class="variable-op">: </code><code class="variable-quote">'</code><code class="variable-string">G</code><code class="variable-quote">'</code><code class="variable-op">,</code><code class="variable-ellipsis">...</code></code>
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<p class="indent-wrapped-lines"><b>Inherited from <code><a href="Bio.Alphabet.Alphabet-class.html">Alphabet.Alphabet</a></code></b>:
<code><a href="Bio.Alphabet.Alphabet-class.html#size">size</a></code>
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<a name="alphabet_matches"></a>
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<h3 class="epydoc">alphabet_matches</h3>
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<dt>Value:</dt>
<dd><table><tr><td><pre class="variable">
<code class="variable-group">{</code><code class="variable-quote">'</code><code class="variable-string">*</code><code class="variable-quote">'</code><code class="variable-op">: </code><code class="variable-quote">'</code><code class="variable-string">GATC</code><code class="variable-quote">'</code><code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">A</code><code class="variable-quote">'</code><code class="variable-op">: </code><code class="variable-quote">'</code><code class="variable-string">A</code><code class="variable-quote">'</code><code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">C</code><code class="variable-quote">'</code><code class="variable-op">: </code><code class="variable-quote">'</code><code class="variable-string">C</code><code class="variable-quote">'</code><code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">G</code><code class="variable-quote">'</code><code class="variable-op">: </code><code class="variable-quote">'</code><code class="variable-string">G</code><code class="variable-quote">'</code><code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">T</code><code class="variable-quote">'</code><code class="variable-op">: </code><code class="variable-quote">'</code><code class="variable-string">T</code><code class="variable-quote">'</code><code class="variable-group">}</code>
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