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        <a href="Bio-module.html">Package&nbsp;Bio</a> ::
        <a href="Bio.PDB-module.html">Package&nbsp;PDB</a> ::
        Module&nbsp;FragmentMapper'
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<h1 class="epydoc">Source Code for <a href="Bio.PDB.FragmentMapper%27-module.html">Module Bio.PDB.FragmentMapper'</a></h1>
<pre class="py-src">
<a name="L1"></a><tt class="py-lineno">  1</tt>  <tt class="py-line"><tt class="py-comment"># Copyright (C) 2002, Thomas Hamelryck (thamelry@binf.ku.dk)</tt> </tt>
<a name="L2"></a><tt class="py-lineno">  2</tt>  <tt class="py-line"><tt class="py-comment"># This code is part of the Biopython distribution and governed by its</tt> </tt>
<a name="L3"></a><tt class="py-lineno">  3</tt>  <tt class="py-line"><tt class="py-comment"># license.  Please see the LICENSE file that should have been included</tt> </tt>
<a name="L4"></a><tt class="py-lineno">  4</tt>  <tt class="py-line"><tt class="py-comment"># as part of this package.</tt> </tt>
<a name="L5"></a><tt class="py-lineno">  5</tt>  <tt class="py-line"> </tt>
<a name="L6"></a><tt class="py-lineno">  6</tt>  <tt class="py-line"><tt class="py-docstring">"""Classify protein backbone structure according to Kolodny et al's fragment</tt> </tt>
<a name="L7"></a><tt class="py-lineno">  7</tt>  <tt class="py-line"><tt class="py-docstring">libraries.</tt> </tt>
<a name="L8"></a><tt class="py-lineno">  8</tt>  <tt class="py-line"><tt class="py-docstring"></tt> </tt>
<a name="L9"></a><tt class="py-lineno">  9</tt>  <tt class="py-line"><tt class="py-docstring">It can be regarded as a form of objective secondary structure classification.</tt> </tt>
<a name="L10"></a><tt class="py-lineno"> 10</tt>  <tt class="py-line"><tt class="py-docstring">Only fragments of length 5 or 7 are supported (ie. there is a 'central'</tt> </tt>
<a name="L11"></a><tt class="py-lineno"> 11</tt>  <tt class="py-line"><tt class="py-docstring">residue).</tt> </tt>
<a name="L12"></a><tt class="py-lineno"> 12</tt>  <tt class="py-line"><tt class="py-docstring"></tt> </tt>
<a name="L13"></a><tt class="py-lineno"> 13</tt>  <tt class="py-line"><tt class="py-docstring">Full reference:</tt> </tt>
<a name="L14"></a><tt class="py-lineno"> 14</tt>  <tt class="py-line"><tt class="py-docstring"></tt> </tt>
<a name="L15"></a><tt class="py-lineno"> 15</tt>  <tt class="py-line"><tt class="py-docstring">Kolodny R, Koehl P, Guibas L, Levitt M.</tt> </tt>
<a name="L16"></a><tt class="py-lineno"> 16</tt>  <tt class="py-line"><tt class="py-docstring">Small libraries of protein fragments model native protein structures accurately.</tt> </tt>
<a name="L17"></a><tt class="py-lineno"> 17</tt>  <tt class="py-line"><tt class="py-docstring">J Mol Biol. 2002 323(2):297-307.</tt> </tt>
<a name="L18"></a><tt class="py-lineno"> 18</tt>  <tt class="py-line"><tt class="py-docstring"></tt> </tt>
<a name="L19"></a><tt class="py-lineno"> 19</tt>  <tt class="py-line"><tt class="py-docstring">The definition files of the fragments can be obtained from:</tt> </tt>
<a name="L20"></a><tt class="py-lineno"> 20</tt>  <tt class="py-line"><tt class="py-docstring"></tt> </tt>
<a name="L21"></a><tt class="py-lineno"> 21</tt>  <tt class="py-line"><tt class="py-docstring">U{http://csb.stanford.edu/~rachel/fragments/}</tt> </tt>
<a name="L22"></a><tt class="py-lineno"> 22</tt>  <tt class="py-line"><tt class="py-docstring"></tt> </tt>
<a name="L23"></a><tt class="py-lineno"> 23</tt>  <tt class="py-line"><tt class="py-docstring">You need these files to use this module.</tt> </tt>
<a name="L24"></a><tt class="py-lineno"> 24</tt>  <tt class="py-line"><tt class="py-docstring"></tt> </tt>
<a name="L25"></a><tt class="py-lineno"> 25</tt>  <tt class="py-line"><tt class="py-docstring">The following example uses the library with 10 fragments of length 5.</tt> </tt>
<a name="L26"></a><tt class="py-lineno"> 26</tt>  <tt class="py-line"><tt class="py-docstring">The library files can be found in directory 'fragment_data'.</tt> </tt>
<a name="L27"></a><tt class="py-lineno"> 27</tt>  <tt class="py-line"><tt class="py-docstring"></tt> </tt>
<a name="L28"></a><tt class="py-lineno"> 28</tt>  <tt class="py-line"><tt class="py-docstring">    &gt;&gt;&gt; model = structure[0]</tt> </tt>
<a name="L29"></a><tt class="py-lineno"> 29</tt>  <tt class="py-line"><tt class="py-docstring">    &gt;&gt;&gt; fm = FragmentMapper(model, lsize=10, flength=5, dir="fragment_data")</tt> </tt>
<a name="L30"></a><tt class="py-lineno"> 30</tt>  <tt class="py-line"><tt class="py-docstring">    &gt;&gt;&gt; fragment = fm[residue]</tt> </tt>
<a name="L31"></a><tt class="py-lineno"> 31</tt>  <tt class="py-line"><tt class="py-docstring">"""</tt> </tt>
<a name="L32"></a><tt class="py-lineno"> 32</tt>  <tt class="py-line"> </tt>
<a name="L33"></a><tt class="py-lineno"> 33</tt>  <tt class="py-line"><tt class="py-keyword">import</tt> <tt class="py-name">numpy</tt> </tt>
<a name="L34"></a><tt class="py-lineno"> 34</tt>  <tt class="py-line"> </tt>
<a name="L35"></a><tt class="py-lineno"> 35</tt>  <tt class="py-line"><tt class="py-keyword">from</tt> <tt id="link-0" class="py-name" targets="Package Bio=Bio-module.html"><a title="Bio" class="py-name" href="#" onclick="return doclink('link-0', 'Bio', 'link-0');">Bio</a></tt><tt class="py-op">.</tt><tt id="link-1" class="py-name" targets="Package Bio.SVDSuperimposer=Bio.SVDSuperimposer-module.html,Class Bio.SVDSuperimposer.SVDSuperimposer'.SVDSuperimposer=Bio.SVDSuperimposer.SVDSuperimposer%27.SVDSuperimposer-class.html"><a title="Bio.SVDSuperimposer
Bio.SVDSuperimposer.SVDSuperimposer'.SVDSuperimposer" class="py-name" href="#" onclick="return doclink('link-1', 'SVDSuperimposer', 'link-1');">SVDSuperimposer</a></tt> <tt class="py-keyword">import</tt> <tt id="link-2" class="py-name"><a title="Bio.SVDSuperimposer
Bio.SVDSuperimposer.SVDSuperimposer'.SVDSuperimposer" class="py-name" href="#" onclick="return doclink('link-2', 'SVDSuperimposer', 'link-1');">SVDSuperimposer</a></tt> </tt>
<a name="L36"></a><tt class="py-lineno"> 36</tt>  <tt class="py-line"> </tt>
<a name="L37"></a><tt class="py-lineno"> 37</tt>  <tt class="py-line"><tt class="py-keyword">from</tt> <tt id="link-3" class="py-name"><a title="Bio" class="py-name" href="#" onclick="return doclink('link-3', 'Bio', 'link-0');">Bio</a></tt><tt class="py-op">.</tt><tt id="link-4" class="py-name" targets="Package Bio.PDB=Bio.PDB-module.html"><a title="Bio.PDB" class="py-name" href="#" onclick="return doclink('link-4', 'PDB', 'link-4');">PDB</a></tt> <tt class="py-keyword">import</tt> <tt id="link-5" class="py-name" targets="Package Bio.GA.Selection=Bio.GA.Selection-module.html,Module Bio.PDB.Selection=Bio.PDB.Selection-module.html"><a title="Bio.GA.Selection
Bio.PDB.Selection" class="py-name" href="#" onclick="return doclink('link-5', 'Selection', 'link-5');">Selection</a></tt> </tt>
<a name="L38"></a><tt class="py-lineno"> 38</tt>  <tt class="py-line"><tt class="py-keyword">from</tt> <tt id="link-6" class="py-name"><a title="Bio" class="py-name" href="#" onclick="return doclink('link-6', 'Bio', 'link-0');">Bio</a></tt><tt class="py-op">.</tt><tt id="link-7" class="py-name"><a title="Bio.PDB" class="py-name" href="#" onclick="return doclink('link-7', 'PDB', 'link-4');">PDB</a></tt><tt class="py-op">.</tt><tt id="link-8" class="py-name" targets="Module Bio.PDB.PDBExceptions=Bio.PDB.PDBExceptions-module.html"><a title="Bio.PDB.PDBExceptions" class="py-name" href="#" onclick="return doclink('link-8', 'PDBExceptions', 'link-8');">PDBExceptions</a></tt> <tt class="py-keyword">import</tt> <tt id="link-9" class="py-name" targets="Class Bio.PDB.PDBExceptions.PDBException=Bio.PDB.PDBExceptions.PDBException-class.html"><a title="Bio.PDB.PDBExceptions.PDBException" class="py-name" href="#" onclick="return doclink('link-9', 'PDBException', 'link-9');">PDBException</a></tt> </tt>
<a name="L39"></a><tt class="py-lineno"> 39</tt>  <tt class="py-line"><tt class="py-keyword">from</tt> <tt id="link-10" class="py-name"><a title="Bio" class="py-name" href="#" onclick="return doclink('link-10', 'Bio', 'link-0');">Bio</a></tt><tt class="py-op">.</tt><tt id="link-11" class="py-name"><a title="Bio.PDB" class="py-name" href="#" onclick="return doclink('link-11', 'PDB', 'link-4');">PDB</a></tt><tt class="py-op">.</tt><tt id="link-12" class="py-name" targets="Class Bio.PDB.PDBParser'.PDBParser=Bio.PDB.PDBParser%27.PDBParser-class.html"><a title="Bio.PDB.PDBParser'.PDBParser" class="py-name" href="#" onclick="return doclink('link-12', 'PDBParser', 'link-12');">PDBParser</a></tt> <tt class="py-keyword">import</tt> <tt id="link-13" class="py-name"><a title="Bio.PDB.PDBParser'.PDBParser" class="py-name" href="#" onclick="return doclink('link-13', 'PDBParser', 'link-12');">PDBParser</a></tt> </tt>
<a name="L40"></a><tt class="py-lineno"> 40</tt>  <tt class="py-line"><tt class="py-keyword">from</tt> <tt id="link-14" class="py-name"><a title="Bio" class="py-name" href="#" onclick="return doclink('link-14', 'Bio', 'link-0');">Bio</a></tt><tt class="py-op">.</tt><tt id="link-15" class="py-name"><a title="Bio.PDB" class="py-name" href="#" onclick="return doclink('link-15', 'PDB', 'link-4');">PDB</a></tt><tt class="py-op">.</tt><tt id="link-16" class="py-name" targets="Module Bio.PDB.Polypeptide=Bio.PDB.Polypeptide-module.html,Class Bio.PDB.Polypeptide.Polypeptide=Bio.PDB.Polypeptide.Polypeptide-class.html"><a title="Bio.PDB.Polypeptide
Bio.PDB.Polypeptide.Polypeptide" class="py-name" href="#" onclick="return doclink('link-16', 'Polypeptide', 'link-16');">Polypeptide</a></tt> <tt class="py-keyword">import</tt> <tt id="link-17" class="py-name" targets="Class Bio.PDB.Polypeptide.PPBuilder=Bio.PDB.Polypeptide.PPBuilder-class.html"><a title="Bio.PDB.Polypeptide.PPBuilder" class="py-name" href="#" onclick="return doclink('link-17', 'PPBuilder', 'link-17');">PPBuilder</a></tt> </tt>
<a name="L41"></a><tt class="py-lineno"> 41</tt>  <tt class="py-line"> </tt>
<a name="L42"></a><tt class="py-lineno"> 42</tt>  <tt class="py-line"> </tt>
<a name="L43"></a><tt class="py-lineno"> 43</tt>  <tt class="py-line"><tt class="py-comment"># fragment file (lib_SIZE_z_LENGTH.txt)</tt> </tt>
<a name="L44"></a><tt class="py-lineno"> 44</tt>  <tt class="py-line"><tt class="py-comment"># SIZE=number of fragments</tt> </tt>
<a name="L45"></a><tt class="py-lineno"> 45</tt>  <tt class="py-line"><tt class="py-comment"># LENGTH=length of fragment (4,5,6,7)</tt> </tt>
<a name="L46"></a><tt class="py-lineno"> 46</tt>  <tt class="py-line"><tt id="link-18" class="py-name" targets="Variable Bio.PDB.FragmentMapper'._FRAGMENT_FILE=Bio.PDB.FragmentMapper%27-module.html#_FRAGMENT_FILE"><a title="Bio.PDB.FragmentMapper'._FRAGMENT_FILE" class="py-name" href="#" onclick="return doclink('link-18', '_FRAGMENT_FILE', 'link-18');">_FRAGMENT_FILE</a></tt><tt class="py-op">=</tt><tt class="py-string">"lib_%s_z_%s.txt"</tt> </tt>
<a name="L47"></a><tt class="py-lineno"> 47</tt>  <tt class="py-line"> </tt>
<a name="L48"></a><tt class="py-lineno"> 48</tt>  <tt class="py-line"> </tt>
<a name="_read_fragments"></a><div id="_read_fragments-def"><a name="L49"></a><tt class="py-lineno"> 49</tt> <a class="py-toggle" href="#" id="_read_fragments-toggle" onclick="return toggle('_read_fragments');">-</a><tt class="py-line"><tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.PDB.FragmentMapper'-module.html#_read_fragments">_read_fragments</a><tt class="py-op">(</tt><tt class="py-param">size</tt><tt class="py-op">,</tt> <tt class="py-param">length</tt><tt class="py-op">,</tt> <tt class="py-param">dir</tt><tt class="py-op">=</tt><tt class="py-string">"."</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="_read_fragments-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="_read_fragments-expanded"><a name="L50"></a><tt class="py-lineno"> 50</tt>  <tt class="py-line">    <tt class="py-docstring">"""</tt> </tt>
<a name="L51"></a><tt class="py-lineno"> 51</tt>  <tt class="py-line"><tt class="py-docstring">    Read a fragment spec file (available from </tt> </tt>
<a name="L52"></a><tt class="py-lineno"> 52</tt>  <tt class="py-line"><tt class="py-docstring">    U{http://csb.stanford.edu/rachel/fragments/} </tt> </tt>
<a name="L53"></a><tt class="py-lineno"> 53</tt>  <tt class="py-line"><tt class="py-docstring">    and return a list of Fragment objects.</tt> </tt>
<a name="L54"></a><tt class="py-lineno"> 54</tt>  <tt class="py-line"><tt class="py-docstring"></tt> </tt>
<a name="L55"></a><tt class="py-lineno"> 55</tt>  <tt class="py-line"><tt class="py-docstring">    @param size: number of fragments in the library</tt> </tt>
<a name="L56"></a><tt class="py-lineno"> 56</tt>  <tt class="py-line"><tt class="py-docstring">    @type size: int</tt> </tt>
<a name="L57"></a><tt class="py-lineno"> 57</tt>  <tt class="py-line"><tt class="py-docstring"></tt> </tt>
<a name="L58"></a><tt class="py-lineno"> 58</tt>  <tt class="py-line"><tt class="py-docstring">    @param length: length of the fragments</tt> </tt>
<a name="L59"></a><tt class="py-lineno"> 59</tt>  <tt class="py-line"><tt class="py-docstring">    @type length: int</tt> </tt>
<a name="L60"></a><tt class="py-lineno"> 60</tt>  <tt class="py-line"><tt class="py-docstring"></tt> </tt>
<a name="L61"></a><tt class="py-lineno"> 61</tt>  <tt class="py-line"><tt class="py-docstring">    @param dir: directory where the fragment spec files can be found</tt> </tt>
<a name="L62"></a><tt class="py-lineno"> 62</tt>  <tt class="py-line"><tt class="py-docstring">    @type dir: string</tt> </tt>
<a name="L63"></a><tt class="py-lineno"> 63</tt>  <tt class="py-line"><tt class="py-docstring">    """</tt> </tt>
<a name="L64"></a><tt class="py-lineno"> 64</tt>  <tt class="py-line">    <tt class="py-name">filename</tt><tt class="py-op">=</tt><tt class="py-op">(</tt><tt class="py-name">dir</tt><tt class="py-op">+</tt><tt class="py-string">"/"</tt><tt class="py-op">+</tt><tt id="link-19" class="py-name"><a title="Bio.PDB.FragmentMapper'._FRAGMENT_FILE" class="py-name" href="#" onclick="return doclink('link-19', '_FRAGMENT_FILE', 'link-18');">_FRAGMENT_FILE</a></tt><tt class="py-op">)</tt> <tt class="py-op">%</tt> <tt class="py-op">(</tt><tt id="link-20" class="py-name" targets="Method Bio.Affy.CelFile.CelRecord.size()=Bio.Affy.CelFile.CelRecord-class.html#size,Variable Bio.Alphabet.Alphabet.size=Bio.Alphabet.Alphabet-class.html#size,Variable Bio.Alphabet.Reduced.HPModel.size=Bio.Alphabet.Reduced.HPModel-class.html#size,Variable Bio.Alphabet.Reduced.Murphy10.size=Bio.Alphabet.Reduced.Murphy10-class.html#size,Variable Bio.Alphabet.Reduced.Murphy15.size=Bio.Alphabet.Reduced.Murphy15-class.html#size,Variable Bio.Alphabet.Reduced.Murphy4.size=Bio.Alphabet.Reduced.Murphy4-class.html#size,Variable Bio.Alphabet.Reduced.Murphy8.size=Bio.Alphabet.Reduced.Murphy8-class.html#size,Variable Bio.Alphabet.Reduced.PC5.size=Bio.Alphabet.Reduced.PC5-class.html#size,Variable Bio.Alphabet.SingleLetterAlphabet.size=Bio.Alphabet.SingleLetterAlphabet-class.html#size,Variable Bio.Alphabet.ThreeLetterProtein.size=Bio.Alphabet.ThreeLetterProtein-class.html#size,Method Bio.GenBank._FeatureConsumer.size()=Bio.GenBank._FeatureConsumer-class.html#size,Method Bio.GenBank._RecordConsumer.size()=Bio.GenBank._RecordConsumer-class.html#size,Variable Bio.Restriction.Restriction.AanI.size=Bio.Restriction.Restriction.AanI-class.html#size,Variable Bio.Restriction.Restriction.AarI.size=Bio.Restriction.Restriction.AarI-class.html#size,Variable Bio.Restriction.Restriction.AasI.size=Bio.Restriction.Restriction.AasI-class.html#size,Variable Bio.Restriction.Restriction.AatI.size=Bio.Restriction.Restriction.AatI-class.html#size,Variable Bio.Restriction.Restriction.AatII.size=Bio.Restriction.Restriction.AatII-class.html#size,Variable Bio.Restriction.Restriction.AbsI.size=Bio.Restriction.Restriction.AbsI-class.html#size,Variable Bio.Restriction.Restriction.Acc16I.size=Bio.Restriction.Restriction.Acc16I-class.html#size,Variable Bio.Restriction.Restriction.Acc36I.size=Bio.Restriction.Restriction.Acc36I-class.html#size,Variable Bio.Restriction.Restriction.Acc65I.size=Bio.Restriction.Restriction.Acc65I-class.html#size,Variable Bio.Restriction.Restriction.AccB1I.size=Bio.Restriction.Restriction.AccB1I-class.html#size,Variable Bio.Restriction.Restriction.AccB7I.size=Bio.Restriction.Restriction.AccB7I-class.html#size,Variable Bio.Restriction.Restriction.AccBSI.size=Bio.Restriction.Restriction.AccBSI-class.html#size,Variable Bio.Restriction.Restriction.AccI.size=Bio.Restriction.Restriction.AccI-class.html#size,Variable Bio.Restriction.Restriction.AccII.size=Bio.Restriction.Restriction.AccII-class.html#size,Variable Bio.Restriction.Restriction.AccIII.size=Bio.Restriction.Restriction.AccIII-class.html#size,Variable Bio.Restriction.Restriction.AceIII.size=Bio.Restriction.Restriction.AceIII-class.html#size,Variable Bio.Restriction.Restriction.AciI.size=Bio.Restriction.Restriction.AciI-class.html#size,Variable Bio.Restriction.Restriction.AclI.size=Bio.Restriction.Restriction.AclI-class.html#size,Variable Bio.Restriction.Restriction.AclWI.size=Bio.Restriction.Restriction.AclWI-class.html#size,Variable Bio.Restriction.Restriction.AcoI.size=Bio.Restriction.Restriction.AcoI-class.html#size,Variable Bio.Restriction.Restriction.AcsI.size=Bio.Restriction.Restriction.AcsI-class.html#size,Variable Bio.Restriction.Restriction.AcuI.size=Bio.Restriction.Restriction.AcuI-class.html#size,Variable Bio.Restriction.Restriction.AcvI.size=Bio.Restriction.Restriction.AcvI-class.html#size,Variable Bio.Restriction.Restriction.AcyI.size=Bio.Restriction.Restriction.AcyI-class.html#size,Variable Bio.Restriction.Restriction.AdeI.size=Bio.Restriction.Restriction.AdeI-class.html#size,Variable Bio.Restriction.Restriction.AfaI.size=Bio.Restriction.Restriction.AfaI-class.html#size,Variable Bio.Restriction.Restriction.AfeI.size=Bio.Restriction.Restriction.AfeI-class.html#size,Variable Bio.Restriction.Restriction.AfiI.size=Bio.Restriction.Restriction.AfiI-class.html#size,Variable Bio.Restriction.Restriction.AflII.size=Bio.Restriction.Restriction.AflII-class.html#size,Variable Bio.Restriction.Restriction.AflIII.size=Bio.Restriction.Restriction.AflIII-class.html#size,Variable Bio.Restriction.Restriction.AgeI.size=Bio.Restriction.Restriction.AgeI-class.html#size,Variable Bio.Restriction.Restriction.AgsI.size=Bio.Restriction.Restriction.AgsI-class.html#size,Variable Bio.Restriction.Restriction.AhaIII.size=Bio.Restriction.Restriction.AhaIII-class.html#size,Variable Bio.Restriction.Restriction.AhdI.size=Bio.Restriction.Restriction.AhdI-class.html#size,Variable Bio.Restriction.Restriction.AhlI.size=Bio.Restriction.Restriction.AhlI-class.html#size,Variable Bio.Restriction.Restriction.AjiI.size=Bio.Restriction.Restriction.AjiI-class.html#size,Variable Bio.Restriction.Restriction.AjnI.size=Bio.Restriction.Restriction.AjnI-class.html#size,Variable Bio.Restriction.Restriction.AjuI.size=Bio.Restriction.Restriction.AjuI-class.html#size,Variable Bio.Restriction.Restriction.AleI.size=Bio.Restriction.Restriction.AleI-class.html#size,Variable Bio.Restriction.Restriction.AlfI.size=Bio.Restriction.Restriction.AlfI-class.html#size,Variable Bio.Restriction.Restriction.AloI.size=Bio.Restriction.Restriction.AloI-class.html#size,Variable Bio.Restriction.Restriction.AluBI.size=Bio.Restriction.Restriction.AluBI-class.html#size,Variable Bio.Restriction.Restriction.AluI.size=Bio.Restriction.Restriction.AluI-class.html#size,Variable Bio.Restriction.Restriction.Alw21I.size=Bio.Restriction.Restriction.Alw21I-class.html#size,Variable Bio.Restriction.Restriction.Alw26I.size=Bio.Restriction.Restriction.Alw26I-class.html#size,Variable Bio.Restriction.Restriction.Alw44I.size=Bio.Restriction.Restriction.Alw44I-class.html#size,Variable Bio.Restriction.Restriction.AlwFI.size=Bio.Restriction.Restriction.AlwFI-class.html#size,Variable Bio.Restriction.Restriction.AlwI.size=Bio.Restriction.Restriction.AlwI-class.html#size,Variable Bio.Restriction.Restriction.AlwNI.size=Bio.Restriction.Restriction.AlwNI-class.html#size,Variable Bio.Restriction.Restriction.Ama87I.size=Bio.Restriction.Restriction.Ama87I-class.html#size,Variable Bio.Restriction.Restriction.Aor13HI.size=Bio.Restriction.Restriction.Aor13HI-class.html#size,Variable Bio.Restriction.Restriction.Aor51HI.size=Bio.Restriction.Restriction.Aor51HI-class.html#size,Variable Bio.Restriction.Restriction.ApaBI.size=Bio.Restriction.Restriction.ApaBI-class.html#size,Variable Bio.Restriction.Restriction.ApaI.size=Bio.Restriction.Restriction.ApaI-class.html#size,Variable Bio.Restriction.Restriction.ApaLI.size=Bio.Restriction.Restriction.ApaLI-class.html#size,Variable Bio.Restriction.Restriction.ApeKI.size=Bio.Restriction.Restriction.ApeKI-class.html#size,Variable Bio.Restriction.Restriction.ApoI.size=Bio.Restriction.Restriction.ApoI-class.html#size,Variable Bio.Restriction.Restriction.ApyPI.size=Bio.Restriction.Restriction.ApyPI-class.html#size,Variable Bio.Restriction.Restriction.AquII.size=Bio.Restriction.Restriction.AquII-class.html#size,Variable Bio.Restriction.Restriction.AquIII.size=Bio.Restriction.Restriction.AquIII-class.html#size,Variable Bio.Restriction.Restriction.AquIV.size=Bio.Restriction.Restriction.AquIV-class.html#size,Variable Bio.Restriction.Restriction.ArsI.size=Bio.Restriction.Restriction.ArsI-class.html#size,Variable Bio.Restriction.Restriction.AscI.size=Bio.Restriction.Restriction.AscI-class.html#size,Variable Bio.Restriction.Restriction.AseI.size=Bio.Restriction.Restriction.AseI-class.html#size,Variable Bio.Restriction.Restriction.Asi256I.size=Bio.Restriction.Restriction.Asi256I-class.html#size,Variable Bio.Restriction.Restriction.AsiGI.size=Bio.Restriction.Restriction.AsiGI-class.html#size,Variable Bio.Restriction.Restriction.AsiSI.size=Bio.Restriction.Restriction.AsiSI-class.html#size,Variable Bio.Restriction.Restriction.Asp700I.size=Bio.Restriction.Restriction.Asp700I-class.html#size,Variable Bio.Restriction.Restriction.Asp718I.size=Bio.Restriction.Restriction.Asp718I-class.html#size,Variable Bio.Restriction.Restriction.AspA2I.size=Bio.Restriction.Restriction.AspA2I-class.html#size,Variable Bio.Restriction.Restriction.AspCNI.size=Bio.Restriction.Restriction.AspCNI-class.html#size,Variable Bio.Restriction.Restriction.AspEI.size=Bio.Restriction.Restriction.AspEI-class.html#size,Variable Bio.Restriction.Restriction.AspI.size=Bio.Restriction.Restriction.AspI-class.html#size,Variable Bio.Restriction.Restriction.AspLEI.size=Bio.Restriction.Restriction.AspLEI-class.html#size,Variable Bio.Restriction.Restriction.AspS9I.size=Bio.Restriction.Restriction.AspS9I-class.html#size,Variable Bio.Restriction.Restriction.AssI.size=Bio.Restriction.Restriction.AssI-class.html#size,Variable Bio.Restriction.Restriction.AsuC2I.size=Bio.Restriction.Restriction.AsuC2I-class.html#size,Variable Bio.Restriction.Restriction.AsuHPI.size=Bio.Restriction.Restriction.AsuHPI-class.html#size,Variable Bio.Restriction.Restriction.AsuI.size=Bio.Restriction.Restriction.AsuI-class.html#size,Variable Bio.Restriction.Restriction.AsuII.size=Bio.Restriction.Restriction.AsuII-class.html#size,Variable Bio.Restriction.Restriction.AsuNHI.size=Bio.Restriction.Restriction.AsuNHI-class.html#size,Variable Bio.Restriction.Restriction.AvaI.size=Bio.Restriction.Restriction.AvaI-class.html#size,Variable Bio.Restriction.Restriction.AvaII.size=Bio.Restriction.Restriction.AvaII-class.html#size,Variable Bio.Restriction.Restriction.AvaIII.size=Bio.Restriction.Restriction.AvaIII-class.html#size,Variable Bio.Restriction.Restriction.AviII.size=Bio.Restriction.Restriction.AviII-class.html#size,Variable Bio.Restriction.Restriction.AvrII.size=Bio.Restriction.Restriction.AvrII-class.html#size,Variable Bio.Restriction.Restriction.AxyI.size=Bio.Restriction.Restriction.AxyI-class.html#size,Variable Bio.Restriction.Restriction.BaeGI.size=Bio.Restriction.Restriction.BaeGI-class.html#size,Variable Bio.Restriction.Restriction.BaeI.size=Bio.Restriction.Restriction.BaeI-class.html#size,Variable Bio.Restriction.Restriction.BalI.size=Bio.Restriction.Restriction.BalI-class.html#size,Variable Bio.Restriction.Restriction.BamHI.size=Bio.Restriction.Restriction.BamHI-class.html#size,Variable Bio.Restriction.Restriction.BanI.size=Bio.Restriction.Restriction.BanI-class.html#size,Variable Bio.Restriction.Restriction.BanII.size=Bio.Restriction.Restriction.BanII-class.html#size,Variable Bio.Restriction.Restriction.BanIII.size=Bio.Restriction.Restriction.BanIII-class.html#size,Variable Bio.Restriction.Restriction.BarI.size=Bio.Restriction.Restriction.BarI-class.html#size,Variable Bio.Restriction.Restriction.BasI.size=Bio.Restriction.Restriction.BasI-class.html#size,Variable Bio.Restriction.Restriction.BauI.size=Bio.Restriction.Restriction.BauI-class.html#size,Variable Bio.Restriction.Restriction.BbeI.size=Bio.Restriction.Restriction.BbeI-class.html#size,Variable Bio.Restriction.Restriction.Bbr7I.size=Bio.Restriction.Restriction.Bbr7I-class.html#size,Variable Bio.Restriction.Restriction.BbrPI.size=Bio.Restriction.Restriction.BbrPI-class.html#size,Variable Bio.Restriction.Restriction.BbsI.size=Bio.Restriction.Restriction.BbsI-class.html#size,Variable Bio.Restriction.Restriction.BbuI.size=Bio.Restriction.Restriction.BbuI-class.html#size,Variable Bio.Restriction.Restriction.Bbv12I.size=Bio.Restriction.Restriction.Bbv12I-class.html#size,Variable Bio.Restriction.Restriction.BbvCI.size=Bio.Restriction.Restriction.BbvCI-class.html#size,Variable Bio.Restriction.Restriction.BbvI.size=Bio.Restriction.Restriction.BbvI-class.html#size,Variable Bio.Restriction.Restriction.BbvII.size=Bio.Restriction.Restriction.BbvII-class.html#size,Variable Bio.Restriction.Restriction.BccI.size=Bio.Restriction.Restriction.BccI-class.html#size,Variable Bio.Restriction.Restriction.Bce83I.size=Bio.Restriction.Restriction.Bce83I-class.html#size,Variable Bio.Restriction.Restriction.BceAI.size=Bio.Restriction.Restriction.BceAI-class.html#size,Variable Bio.Restriction.Restriction.BcefI.size=Bio.Restriction.Restriction.BcefI-class.html#size,Variable Bio.Restriction.Restriction.BcgI.size=Bio.Restriction.Restriction.BcgI-class.html#size,Variable Bio.Restriction.Restriction.BciVI.size=Bio.Restriction.Restriction.BciVI-class.html#size,Variable Bio.Restriction.Restriction.BclI.size=Bio.Restriction.Restriction.BclI-class.html#size,Variable Bio.Restriction.Restriction.BcnI.size=Bio.Restriction.Restriction.BcnI-class.html#size,Variable Bio.Restriction.Restriction.BcuI.size=Bio.Restriction.Restriction.BcuI-class.html#size,Variable Bio.Restriction.Restriction.BdaI.size=Bio.Restriction.Restriction.BdaI-class.html#size,Variable Bio.Restriction.Restriction.BetI.size=Bio.Restriction.Restriction.BetI-class.html#size,Variable Bio.Restriction.Restriction.BfaI.size=Bio.Restriction.Restriction.BfaI-class.html#size,Variable Bio.Restriction.Restriction.BfiI.size=Bio.Restriction.Restriction.BfiI-class.html#size,Variable Bio.Restriction.Restriction.BfmI.size=Bio.Restriction.Restriction.BfmI-class.html#size,Variable Bio.Restriction.Restriction.BfoI.size=Bio.Restriction.Restriction.BfoI-class.html#size,Variable Bio.Restriction.Restriction.BfrI.size=Bio.Restriction.Restriction.BfrI-class.html#size,Variable Bio.Restriction.Restriction.BfuAI.size=Bio.Restriction.Restriction.BfuAI-class.html#size,Variable Bio.Restriction.Restriction.BfuCI.size=Bio.Restriction.Restriction.BfuCI-class.html#size,Variable Bio.Restriction.Restriction.BfuI.size=Bio.Restriction.Restriction.BfuI-class.html#size,Variable Bio.Restriction.Restriction.BglI.size=Bio.Restriction.Restriction.BglI-class.html#size,Variable Bio.Restriction.Restriction.BglII.size=Bio.Restriction.Restriction.BglII-class.html#size,Variable Bio.Restriction.Restriction.BinI.size=Bio.Restriction.Restriction.BinI-class.html#size,Variable Bio.Restriction.Restriction.BisI.size=Bio.Restriction.Restriction.BisI-class.html#size,Variable Bio.Restriction.Restriction.BlnI.size=Bio.Restriction.Restriction.BlnI-class.html#size,Variable Bio.Restriction.Restriction.BlpI.size=Bio.Restriction.Restriction.BlpI-class.html#size,Variable Bio.Restriction.Restriction.BlsI.size=Bio.Restriction.Restriction.BlsI-class.html#size,Variable Bio.Restriction.Restriction.BmcAI.size=Bio.Restriction.Restriction.BmcAI-class.html#size,Variable Bio.Restriction.Restriction.Bme1390I.size=Bio.Restriction.Restriction.Bme1390I-class.html#size,Variable Bio.Restriction.Restriction.Bme18I.size=Bio.Restriction.Restriction.Bme18I-class.html#size,Variable Bio.Restriction.Restriction.BmeRI.size=Bio.Restriction.Restriction.BmeRI-class.html#size,Variable Bio.Restriction.Restriction.BmeT110I.size=Bio.Restriction.Restriction.BmeT110I-class.html#size,Variable Bio.Restriction.Restriction.BmgBI.size=Bio.Restriction.Restriction.BmgBI-class.html#size,Variable Bio.Restriction.Restriction.BmgI.size=Bio.Restriction.Restriction.BmgI-class.html#size,Variable Bio.Restriction.Restriction.BmgT120I.size=Bio.Restriction.Restriction.BmgT120I-class.html#size,Variable Bio.Restriction.Restriction.BmiI.size=Bio.Restriction.Restriction.BmiI-class.html#size,Variable Bio.Restriction.Restriction.BmrFI.size=Bio.Restriction.Restriction.BmrFI-class.html#size,Variable Bio.Restriction.Restriction.BmrI.size=Bio.Restriction.Restriction.BmrI-class.html#size,Variable Bio.Restriction.Restriction.BmsI.size=Bio.Restriction.Restriction.BmsI-class.html#size,Variable Bio.Restriction.Restriction.BmtI.size=Bio.Restriction.Restriction.BmtI-class.html#size,Variable Bio.Restriction.Restriction.BmuI.size=Bio.Restriction.Restriction.BmuI-class.html#size,Variable Bio.Restriction.Restriction.BoxI.size=Bio.Restriction.Restriction.BoxI-class.html#size,Variable Bio.Restriction.Restriction.BpiI.size=Bio.Restriction.Restriction.BpiI-class.html#size,Variable Bio.Restriction.Restriction.BplI.size=Bio.Restriction.Restriction.BplI-class.html#size,Variable Bio.Restriction.Restriction.BpmI.size=Bio.Restriction.Restriction.BpmI-class.html#size,Variable Bio.Restriction.Restriction.Bpu10I.size=Bio.Restriction.Restriction.Bpu10I-class.html#size,Variable Bio.Restriction.Restriction.Bpu1102I.size=Bio.Restriction.Restriction.Bpu1102I-class.html#size,Variable Bio.Restriction.Restriction.Bpu14I.size=Bio.Restriction.Restriction.Bpu14I-class.html#size,Variable Bio.Restriction.Restriction.BpuAI.size=Bio.Restriction.Restriction.BpuAI-class.html#size,Variable Bio.Restriction.Restriction.BpuEI.size=Bio.Restriction.Restriction.BpuEI-class.html#size,Variable Bio.Restriction.Restriction.BpuMI.size=Bio.Restriction.Restriction.BpuMI-class.html#size,Variable Bio.Restriction.Restriction.BpvUI.size=Bio.Restriction.Restriction.BpvUI-class.html#size,Variable Bio.Restriction.Restriction.Bsa29I.size=Bio.Restriction.Restriction.Bsa29I-class.html#size,Variable Bio.Restriction.Restriction.BsaAI.size=Bio.Restriction.Restriction.BsaAI-class.html#size,Variable Bio.Restriction.Restriction.BsaBI.size=Bio.Restriction.Restriction.BsaBI-class.html#size,Variable Bio.Restriction.Restriction.BsaHI.size=Bio.Restriction.Restriction.BsaHI-class.html#size,Variable Bio.Restriction.Restriction.BsaI.size=Bio.Restriction.Restriction.BsaI-class.html#size,Variable Bio.Restriction.Restriction.BsaJI.size=Bio.Restriction.Restriction.BsaJI-class.html#size,Variable Bio.Restriction.Restriction.BsaMI.size=Bio.Restriction.Restriction.BsaMI-class.html#size,Variable Bio.Restriction.Restriction.BsaWI.size=Bio.Restriction.Restriction.BsaWI-class.html#size,Variable Bio.Restriction.Restriction.BsaXI.size=Bio.Restriction.Restriction.BsaXI-class.html#size,Variable Bio.Restriction.Restriction.BsbI.size=Bio.Restriction.Restriction.BsbI-class.html#size,Variable Bio.Restriction.Restriction.Bsc4I.size=Bio.Restriction.Restriction.Bsc4I-class.html#size,Variable Bio.Restriction.Restriction.BscAI.size=Bio.Restriction.Restriction.BscAI-class.html#size,Variable Bio.Restriction.Restriction.BscGI.size=Bio.Restriction.Restriction.BscGI-class.html#size,Variable Bio.Restriction.Restriction.Bse118I.size=Bio.Restriction.Restriction.Bse118I-class.html#size,Variable Bio.Restriction.Restriction.Bse1I.size=Bio.Restriction.Restriction.Bse1I-class.html#size,Variable Bio.Restriction.Restriction.Bse21I.size=Bio.Restriction.Restriction.Bse21I-class.html#size,Variable Bio.Restriction.Restriction.Bse3DI.size=Bio.Restriction.Restriction.Bse3DI-class.html#size,Variable Bio.Restriction.Restriction.Bse8I.size=Bio.Restriction.Restriction.Bse8I-class.html#size,Variable Bio.Restriction.Restriction.BseAI.size=Bio.Restriction.Restriction.BseAI-class.html#size,Variable Bio.Restriction.Restriction.BseBI.size=Bio.Restriction.Restriction.BseBI-class.html#size,Variable Bio.Restriction.Restriction.BseCI.size=Bio.Restriction.Restriction.BseCI-class.html#size,Variable Bio.Restriction.Restriction.BseDI.size=Bio.Restriction.Restriction.BseDI-class.html#size,Variable Bio.Restriction.Restriction.BseGI.size=Bio.Restriction.Restriction.BseGI-class.html#size,Variable Bio.Restriction.Restriction.BseJI.size=Bio.Restriction.Restriction.BseJI-class.html#size,Variable Bio.Restriction.Restriction.BseLI.size=Bio.Restriction.Restriction.BseLI-class.html#size,Variable Bio.Restriction.Restriction.BseMI.size=Bio.Restriction.Restriction.BseMI-class.html#size,Variable Bio.Restriction.Restriction.BseMII.size=Bio.Restriction.Restriction.BseMII-class.html#size,Variable Bio.Restriction.Restriction.BseNI.size=Bio.Restriction.Restriction.BseNI-class.html#size,Variable Bio.Restriction.Restriction.BsePI.size=Bio.Restriction.Restriction.BsePI-class.html#size,Variable Bio.Restriction.Restriction.BseRI.size=Bio.Restriction.Restriction.BseRI-class.html#size,Variable Bio.Restriction.Restriction.BseSI.size=Bio.Restriction.Restriction.BseSI-class.html#size,Variable Bio.Restriction.Restriction.BseX3I.size=Bio.Restriction.Restriction.BseX3I-class.html#size,Variable Bio.Restriction.Restriction.BseXI.size=Bio.Restriction.Restriction.BseXI-class.html#size,Variable Bio.Restriction.Restriction.BseYI.size=Bio.Restriction.Restriction.BseYI-class.html#size,Variable Bio.Restriction.Restriction.BsgI.size=Bio.Restriction.Restriction.BsgI-class.html#size,Variable Bio.Restriction.Restriction.Bsh1236I.size=Bio.Restriction.Restriction.Bsh1236I-class.html#size,Variable Bio.Restriction.Restriction.Bsh1285I.size=Bio.Restriction.Restriction.Bsh1285I-class.html#size,Variable Bio.Restriction.Restriction.BshFI.size=Bio.Restriction.Restriction.BshFI-class.html#size,Variable Bio.Restriction.Restriction.BshNI.size=Bio.Restriction.Restriction.BshNI-class.html#size,Variable Bio.Restriction.Restriction.BshTI.size=Bio.Restriction.Restriction.BshTI-class.html#size,Variable Bio.Restriction.Restriction.BshVI.size=Bio.Restriction.Restriction.BshVI-class.html#size,Variable Bio.Restriction.Restriction.BsiEI.size=Bio.Restriction.Restriction.BsiEI-class.html#size,Variable Bio.Restriction.Restriction.BsiHKAI.size=Bio.Restriction.Restriction.BsiHKAI-class.html#size,Variable Bio.Restriction.Restriction.BsiHKCI.size=Bio.Restriction.Restriction.BsiHKCI-class.html#size,Variable Bio.Restriction.Restriction.BsiI.size=Bio.Restriction.Restriction.BsiI-class.html#size,Variable Bio.Restriction.Restriction.BsiSI.size=Bio.Restriction.Restriction.BsiSI-class.html#size,Variable Bio.Restriction.Restriction.BsiWI.size=Bio.Restriction.Restriction.BsiWI-class.html#size,Variable Bio.Restriction.Restriction.BsiYI.size=Bio.Restriction.Restriction.BsiYI-class.html#size,Variable Bio.Restriction.Restriction.BslFI.size=Bio.Restriction.Restriction.BslFI-class.html#size,Variable Bio.Restriction.Restriction.BslI.size=Bio.Restriction.Restriction.BslI-class.html#size,Variable Bio.Restriction.Restriction.BsmAI.size=Bio.Restriction.Restriction.BsmAI-class.html#size,Variable Bio.Restriction.Restriction.BsmBI.size=Bio.Restriction.Restriction.BsmBI-class.html#size,Variable Bio.Restriction.Restriction.BsmFI.size=Bio.Restriction.Restriction.BsmFI-class.html#size,Variable Bio.Restriction.Restriction.BsmI.size=Bio.Restriction.Restriction.BsmI-class.html#size,Variable Bio.Restriction.Restriction.BsnI.size=Bio.Restriction.Restriction.BsnI-class.html#size,Variable Bio.Restriction.Restriction.Bso31I.size=Bio.Restriction.Restriction.Bso31I-class.html#size,Variable Bio.Restriction.Restriction.BsoBI.size=Bio.Restriction.Restriction.BsoBI-class.html#size,Variable Bio.Restriction.Restriction.Bsp119I.size=Bio.Restriction.Restriction.Bsp119I-class.html#size,Variable Bio.Restriction.Restriction.Bsp120I.size=Bio.Restriction.Restriction.Bsp120I-class.html#size,Variable Bio.Restriction.Restriction.Bsp1286I.size=Bio.Restriction.Restriction.Bsp1286I-class.html#size,Variable Bio.Restriction.Restriction.Bsp13I.size=Bio.Restriction.Restriction.Bsp13I-class.html#size,Variable Bio.Restriction.Restriction.Bsp1407I.size=Bio.Restriction.Restriction.Bsp1407I-class.html#size,Variable Bio.Restriction.Restriction.Bsp143I.size=Bio.Restriction.Restriction.Bsp143I-class.html#size,Variable Bio.Restriction.Restriction.Bsp1720I.size=Bio.Restriction.Restriction.Bsp1720I-class.html#size,Variable Bio.Restriction.Restriction.Bsp19I.size=Bio.Restriction.Restriction.Bsp19I-class.html#size,Variable Bio.Restriction.Restriction.Bsp24I.size=Bio.Restriction.Restriction.Bsp24I-class.html#size,Variable Bio.Restriction.Restriction.Bsp68I.size=Bio.Restriction.Restriction.Bsp68I-class.html#size,Variable Bio.Restriction.Restriction.BspACI.size=Bio.Restriction.Restriction.BspACI-class.html#size,Variable Bio.Restriction.Restriction.BspCNI.size=Bio.Restriction.Restriction.BspCNI-class.html#size,Variable Bio.Restriction.Restriction.BspD6I.size=Bio.Restriction.Restriction.BspD6I-class.html#size,Variable Bio.Restriction.Restriction.BspDI.size=Bio.Restriction.Restriction.BspDI-class.html#size,Variable Bio.Restriction.Restriction.BspEI.size=Bio.Restriction.Restriction.BspEI-class.html#size,Variable Bio.Restriction.Restriction.BspFNI.size=Bio.Restriction.Restriction.BspFNI-class.html#size,Variable Bio.Restriction.Restriction.BspGI.size=Bio.Restriction.Restriction.BspGI-class.html#size,Variable Bio.Restriction.Restriction.BspHI.size=Bio.Restriction.Restriction.BspHI-class.html#size,Variable Bio.Restriction.Restriction.BspLI.size=Bio.Restriction.Restriction.BspLI-class.html#size,Variable Bio.Restriction.Restriction.BspLU11I.size=Bio.Restriction.Restriction.BspLU11I-class.html#size,Variable Bio.Restriction.Restriction.BspMI.size=Bio.Restriction.Restriction.BspMI-class.html#size,Variable Bio.Restriction.Restriction.BspMII.size=Bio.Restriction.Restriction.BspMII-class.html#size,Variable Bio.Restriction.Restriction.BspNCI.size=Bio.Restriction.Restriction.BspNCI-class.html#size,Variable Bio.Restriction.Restriction.BspOI.size=Bio.Restriction.Restriction.BspOI-class.html#size,Variable Bio.Restriction.Restriction.BspPI.size=Bio.Restriction.Restriction.BspPI-class.html#size,Variable Bio.Restriction.Restriction.BspQI.size=Bio.Restriction.Restriction.BspQI-class.html#size,Variable Bio.Restriction.Restriction.BspT104I.size=Bio.Restriction.Restriction.BspT104I-class.html#size,Variable Bio.Restriction.Restriction.BspT107I.size=Bio.Restriction.Restriction.BspT107I-class.html#size,Variable Bio.Restriction.Restriction.BspTI.size=Bio.Restriction.Restriction.BspTI-class.html#size,Variable Bio.Restriction.Restriction.BspTNI.size=Bio.Restriction.Restriction.BspTNI-class.html#size,Variable Bio.Restriction.Restriction.BspXI.size=Bio.Restriction.Restriction.BspXI-class.html#size,Variable Bio.Restriction.Restriction.BsrBI.size=Bio.Restriction.Restriction.BsrBI-class.html#size,Variable Bio.Restriction.Restriction.BsrDI.size=Bio.Restriction.Restriction.BsrDI-class.html#size,Variable Bio.Restriction.Restriction.BsrFI.size=Bio.Restriction.Restriction.BsrFI-class.html#size,Variable Bio.Restriction.Restriction.BsrGI.size=Bio.Restriction.Restriction.BsrGI-class.html#size,Variable Bio.Restriction.Restriction.BsrI.size=Bio.Restriction.Restriction.BsrI-class.html#size,Variable Bio.Restriction.Restriction.BsrSI.size=Bio.Restriction.Restriction.BsrSI-class.html#size,Variable Bio.Restriction.Restriction.BssAI.size=Bio.Restriction.Restriction.BssAI-class.html#size,Variable Bio.Restriction.Restriction.BssECI.size=Bio.Restriction.Restriction.BssECI-class.html#size,Variable Bio.Restriction.Restriction.BssHII.size=Bio.Restriction.Restriction.BssHII-class.html#size,Variable Bio.Restriction.Restriction.BssKI.size=Bio.Restriction.Restriction.BssKI-class.html#size,Variable Bio.Restriction.Restriction.BssMI.size=Bio.Restriction.Restriction.BssMI-class.html#size,Variable Bio.Restriction.Restriction.BssNAI.size=Bio.Restriction.Restriction.BssNAI-class.html#size,Variable Bio.Restriction.Restriction.BssNI.size=Bio.Restriction.Restriction.BssNI-class.html#size,Variable Bio.Restriction.Restriction.BssSI.size=Bio.Restriction.Restriction.BssSI-class.html#size,Variable Bio.Restriction.Restriction.BssT1I.size=Bio.Restriction.Restriction.BssT1I-class.html#size,Variable Bio.Restriction.Restriction.Bst1107I.size=Bio.Restriction.Restriction.Bst1107I-class.html#size,Variable Bio.Restriction.Restriction.Bst2BI.size=Bio.Restriction.Restriction.Bst2BI-class.html#size,Variable Bio.Restriction.Restriction.Bst2UI.size=Bio.Restriction.Restriction.Bst2UI-class.html#size,Variable Bio.Restriction.Restriction.Bst4CI.size=Bio.Restriction.Restriction.Bst4CI-class.html#size,Variable Bio.Restriction.Restriction.Bst6I.size=Bio.Restriction.Restriction.Bst6I-class.html#size,Variable Bio.Restriction.Restriction.Bst98I.size=Bio.Restriction.Restriction.Bst98I-class.html#size,Variable Bio.Restriction.Restriction.BstACI.size=Bio.Restriction.Restriction.BstACI-class.html#size,Variable Bio.Restriction.Restriction.BstAFI.size=Bio.Restriction.Restriction.BstAFI-class.html#size,Variable Bio.Restriction.Restriction.BstAPI.size=Bio.Restriction.Restriction.BstAPI-class.html#size,Variable Bio.Restriction.Restriction.BstAUI.size=Bio.Restriction.Restriction.BstAUI-class.html#size,Variable Bio.Restriction.Restriction.BstBAI.size=Bio.Restriction.Restriction.BstBAI-class.html#size,Variable Bio.Restriction.Restriction.BstBI.size=Bio.Restriction.Restriction.BstBI-class.html#size,Variable Bio.Restriction.Restriction.BstC8I.size=Bio.Restriction.Restriction.BstC8I-class.html#size,Variable Bio.Restriction.Restriction.BstDEI.size=Bio.Restriction.Restriction.BstDEI-class.html#size,Variable Bio.Restriction.Restriction.BstDSI.size=Bio.Restriction.Restriction.BstDSI-class.html#size,Variable Bio.Restriction.Restriction.BstEII.size=Bio.Restriction.Restriction.BstEII-class.html#size,Variable Bio.Restriction.Restriction.BstENI.size=Bio.Restriction.Restriction.BstENI-class.html#size,Variable Bio.Restriction.Restriction.BstF5I.size=Bio.Restriction.Restriction.BstF5I-class.html#size,Variable Bio.Restriction.Restriction.BstFNI.size=Bio.Restriction.Restriction.BstFNI-class.html#size,Variable Bio.Restriction.Restriction.BstH2I.size=Bio.Restriction.Restriction.BstH2I-class.html#size,Variable Bio.Restriction.Restriction.BstHHI.size=Bio.Restriction.Restriction.BstHHI-class.html#size,Variable Bio.Restriction.Restriction.BstKTI.size=Bio.Restriction.Restriction.BstKTI-class.html#size,Variable Bio.Restriction.Restriction.BstMAI.size=Bio.Restriction.Restriction.BstMAI-class.html#size,Variable Bio.Restriction.Restriction.BstMBI.size=Bio.Restriction.Restriction.BstMBI-class.html#size,Variable Bio.Restriction.Restriction.BstMCI.size=Bio.Restriction.Restriction.BstMCI-class.html#size,Variable Bio.Restriction.Restriction.BstMWI.size=Bio.Restriction.Restriction.BstMWI-class.html#size,Variable Bio.Restriction.Restriction.BstNI.size=Bio.Restriction.Restriction.BstNI-class.html#size,Variable Bio.Restriction.Restriction.BstNSI.size=Bio.Restriction.Restriction.BstNSI-class.html#size,Variable Bio.Restriction.Restriction.BstOI.size=Bio.Restriction.Restriction.BstOI-class.html#size,Variable Bio.Restriction.Restriction.BstPAI.size=Bio.Restriction.Restriction.BstPAI-class.html#size,Variable Bio.Restriction.Restriction.BstPI.size=Bio.Restriction.Restriction.BstPI-class.html#size,Variable Bio.Restriction.Restriction.BstSCI.size=Bio.Restriction.Restriction.BstSCI-class.html#size,Variable Bio.Restriction.Restriction.BstSFI.size=Bio.Restriction.Restriction.BstSFI-class.html#size,Variable Bio.Restriction.Restriction.BstSLI.size=Bio.Restriction.Restriction.BstSLI-class.html#size,Variable Bio.Restriction.Restriction.BstSNI.size=Bio.Restriction.Restriction.BstSNI-class.html#size,Variable Bio.Restriction.Restriction.BstUI.size=Bio.Restriction.Restriction.BstUI-class.html#size,Variable Bio.Restriction.Restriction.BstV1I.size=Bio.Restriction.Restriction.BstV1I-class.html#size,Variable Bio.Restriction.Restriction.BstV2I.size=Bio.Restriction.Restriction.BstV2I-class.html#size,Variable Bio.Restriction.Restriction.BstX2I.size=Bio.Restriction.Restriction.BstX2I-class.html#size,Variable Bio.Restriction.Restriction.BstXI.size=Bio.Restriction.Restriction.BstXI-class.html#size,Variable Bio.Restriction.Restriction.BstYI.size=Bio.Restriction.Restriction.BstYI-class.html#size,Variable Bio.Restriction.Restriction.BstZ17I.size=Bio.Restriction.Restriction.BstZ17I-class.html#size,Variable Bio.Restriction.Restriction.BstZI.size=Bio.Restriction.Restriction.BstZI-class.html#size,Variable Bio.Restriction.Restriction.Bsu15I.size=Bio.Restriction.Restriction.Bsu15I-class.html#size,Variable Bio.Restriction.Restriction.Bsu36I.size=Bio.Restriction.Restriction.Bsu36I-class.html#size,Variable Bio.Restriction.Restriction.BsuRI.size=Bio.Restriction.Restriction.BsuRI-class.html#size,Variable Bio.Restriction.Restriction.BsuTUI.size=Bio.Restriction.Restriction.BsuTUI-class.html#size,Variable Bio.Restriction.Restriction.BtgI.size=Bio.Restriction.Restriction.BtgI-class.html#size,Variable Bio.Restriction.Restriction.BtgZI.size=Bio.Restriction.Restriction.BtgZI-class.html#size,Variable Bio.Restriction.Restriction.BthCI.size=Bio.Restriction.Restriction.BthCI-class.html#size,Variable Bio.Restriction.Restriction.BtrI.size=Bio.Restriction.Restriction.BtrI-class.html#size,Variable Bio.Restriction.Restriction.BtsCI.size=Bio.Restriction.Restriction.BtsCI-class.html#size,Variable Bio.Restriction.Restriction.BtsI.size=Bio.Restriction.Restriction.BtsI-class.html#size,Variable Bio.Restriction.Restriction.BtuMI.size=Bio.Restriction.Restriction.BtuMI-class.html#size,Variable Bio.Restriction.Restriction.BveI.size=Bio.Restriction.Restriction.BveI-class.html#size,Variable Bio.Restriction.Restriction.Cac8I.size=Bio.Restriction.Restriction.Cac8I-class.html#size,Variable Bio.Restriction.Restriction.CaiI.size=Bio.Restriction.Restriction.CaiI-class.html#size,Variable Bio.Restriction.Restriction.CauII.size=Bio.Restriction.Restriction.CauII-class.html#size,Variable Bio.Restriction.Restriction.CciI.size=Bio.Restriction.Restriction.CciI-class.html#size,Variable Bio.Restriction.Restriction.CciNI.size=Bio.Restriction.Restriction.CciNI-class.html#size,Variable Bio.Restriction.Restriction.CdiI.size=Bio.Restriction.Restriction.CdiI-class.html#size,Variable Bio.Restriction.Restriction.CdpI.size=Bio.Restriction.Restriction.CdpI-class.html#size,Variable Bio.Restriction.Restriction.CelII.size=Bio.Restriction.Restriction.CelII-class.html#size,Variable Bio.Restriction.Restriction.CfoI.size=Bio.Restriction.Restriction.CfoI-class.html#size,Variable Bio.Restriction.Restriction.Cfr10I.size=Bio.Restriction.Restriction.Cfr10I-class.html#size,Variable Bio.Restriction.Restriction.Cfr13I.size=Bio.Restriction.Restriction.Cfr13I-class.html#size,Variable Bio.Restriction.Restriction.Cfr42I.size=Bio.Restriction.Restriction.Cfr42I-class.html#size,Variable Bio.Restriction.Restriction.Cfr9I.size=Bio.Restriction.Restriction.Cfr9I-class.html#size,Variable Bio.Restriction.Restriction.CfrI.size=Bio.Restriction.Restriction.CfrI-class.html#size,Variable Bio.Restriction.Restriction.ChaI.size=Bio.Restriction.Restriction.ChaI-class.html#size,Variable Bio.Restriction.Restriction.CjeI.size=Bio.Restriction.Restriction.CjeI-class.html#size,Variable Bio.Restriction.Restriction.CjeNII.size=Bio.Restriction.Restriction.CjeNII-class.html#size,Variable Bio.Restriction.Restriction.CjePI.size=Bio.Restriction.Restriction.CjePI-class.html#size,Variable Bio.Restriction.Restriction.CjuI.size=Bio.Restriction.Restriction.CjuI-class.html#size,Variable Bio.Restriction.Restriction.CjuII.size=Bio.Restriction.Restriction.CjuII-class.html#size,Variable Bio.Restriction.Restriction.ClaI.size=Bio.Restriction.Restriction.ClaI-class.html#size,Variable Bio.Restriction.Restriction.CpoI.size=Bio.Restriction.Restriction.CpoI-class.html#size,Variable Bio.Restriction.Restriction.CseI.size=Bio.Restriction.Restriction.CseI-class.html#size,Variable Bio.Restriction.Restriction.CsiI.size=Bio.Restriction.Restriction.CsiI-class.html#size,Variable Bio.Restriction.Restriction.Csp45I.size=Bio.Restriction.Restriction.Csp45I-class.html#size,Variable Bio.Restriction.Restriction.Csp6I.size=Bio.Restriction.Restriction.Csp6I-class.html#size,Variable Bio.Restriction.Restriction.CspAI.size=Bio.Restriction.Restriction.CspAI-class.html#size,Variable Bio.Restriction.Restriction.CspCI.size=Bio.Restriction.Restriction.CspCI-class.html#size,Variable Bio.Restriction.Restriction.CspI.size=Bio.Restriction.Restriction.CspI-class.html#size,Variable Bio.Restriction.Restriction.CstMI.size=Bio.Restriction.Restriction.CstMI-class.html#size,Variable Bio.Restriction.Restriction.CviAII.size=Bio.Restriction.Restriction.CviAII-class.html#size,Variable Bio.Restriction.Restriction.CviJI.size=Bio.Restriction.Restriction.CviJI-class.html#size,Variable Bio.Restriction.Restriction.CviKI_1.size=Bio.Restriction.Restriction.CviKI_1-class.html#size,Variable Bio.Restriction.Restriction.CviQI.size=Bio.Restriction.Restriction.CviQI-class.html#size,Variable Bio.Restriction.Restriction.CviRI.size=Bio.Restriction.Restriction.CviRI-class.html#size,Variable Bio.Restriction.Restriction.DdeI.size=Bio.Restriction.Restriction.DdeI-class.html#size,Variable Bio.Restriction.Restriction.DinI.size=Bio.Restriction.Restriction.DinI-class.html#size,Variable Bio.Restriction.Restriction.DpnI.size=Bio.Restriction.Restriction.DpnI-class.html#size,Variable Bio.Restriction.Restriction.DpnII.size=Bio.Restriction.Restriction.DpnII-class.html#size,Variable Bio.Restriction.Restriction.DraI.size=Bio.Restriction.Restriction.DraI-class.html#size,Variable Bio.Restriction.Restriction.DraII.size=Bio.Restriction.Restriction.DraII-class.html#size,Variable Bio.Restriction.Restriction.DraIII.size=Bio.Restriction.Restriction.DraIII-class.html#size,Variable Bio.Restriction.Restriction.DraRI.size=Bio.Restriction.Restriction.DraRI-class.html#size,Variable Bio.Restriction.Restriction.DrdI.size=Bio.Restriction.Restriction.DrdI-class.html#size,Variable Bio.Restriction.Restriction.DrdII.size=Bio.Restriction.Restriction.DrdII-class.html#size,Variable Bio.Restriction.Restriction.DrdIV.size=Bio.Restriction.Restriction.DrdIV-class.html#size,Variable Bio.Restriction.Restriction.DriI.size=Bio.Restriction.Restriction.DriI-class.html#size,Variable Bio.Restriction.Restriction.DsaI.size=Bio.Restriction.Restriction.DsaI-class.html#size,Variable Bio.Restriction.Restriction.DseDI.size=Bio.Restriction.Restriction.DseDI-class.html#size,Variable Bio.Restriction.Restriction.EaeI.size=Bio.Restriction.Restriction.EaeI-class.html#size,Variable Bio.Restriction.Restriction.EagI.size=Bio.Restriction.Restriction.EagI-class.html#size,Variable Bio.Restriction.Restriction.Eam1104I.size=Bio.Restriction.Restriction.Eam1104I-class.html#size,Variable Bio.Restriction.Restriction.Eam1105I.size=Bio.Restriction.Restriction.Eam1105I-class.html#size,Variable Bio.Restriction.Restriction.EarI.size=Bio.Restriction.Restriction.EarI-class.html#size,Variable Bio.Restriction.Restriction.EciI.size=Bio.Restriction.Restriction.EciI-class.html#size,Variable Bio.Restriction.Restriction.Ecl136II.size=Bio.Restriction.Restriction.Ecl136II-class.html#size,Variable Bio.Restriction.Restriction.EclXI.size=Bio.Restriction.Restriction.EclXI-class.html#size,Variable Bio.Restriction.Restriction.Eco105I.size=Bio.Restriction.Restriction.Eco105I-class.html#size,Variable Bio.Restriction.Restriction.Eco130I.size=Bio.Restriction.Restriction.Eco130I-class.html#size,Variable Bio.Restriction.Restriction.Eco147I.size=Bio.Restriction.Restriction.Eco147I-class.html#size,Variable Bio.Restriction.Restriction.Eco24I.size=Bio.Restriction.Restriction.Eco24I-class.html#size,Variable Bio.Restriction.Restriction.Eco31I.size=Bio.Restriction.Restriction.Eco31I-class.html#size,Variable Bio.Restriction.Restriction.Eco32I.size=Bio.Restriction.Restriction.Eco32I-class.html#size,Variable Bio.Restriction.Restriction.Eco47I.size=Bio.Restriction.Restriction.Eco47I-class.html#size,Variable Bio.Restriction.Restriction.Eco47III.size=Bio.Restriction.Restriction.Eco47III-class.html#size,Variable Bio.Restriction.Restriction.Eco52I.size=Bio.Restriction.Restriction.Eco52I-class.html#size,Variable Bio.Restriction.Restriction.Eco53kI.size=Bio.Restriction.Restriction.Eco53kI-class.html#size,Variable Bio.Restriction.Restriction.Eco57I.size=Bio.Restriction.Restriction.Eco57I-class.html#size,Variable Bio.Restriction.Restriction.Eco57MI.size=Bio.Restriction.Restriction.Eco57MI-class.html#size,Variable Bio.Restriction.Restriction.Eco72I.size=Bio.Restriction.Restriction.Eco72I-class.html#size,Variable Bio.Restriction.Restriction.Eco81I.size=Bio.Restriction.Restriction.Eco81I-class.html#size,Variable Bio.Restriction.Restriction.Eco88I.size=Bio.Restriction.Restriction.Eco88I-class.html#size,Variable Bio.Restriction.Restriction.Eco91I.size=Bio.Restriction.Restriction.Eco91I-class.html#size,Variable Bio.Restriction.Restriction.EcoHI.size=Bio.Restriction.Restriction.EcoHI-class.html#size,Variable Bio.Restriction.Restriction.EcoICRI.size=Bio.Restriction.Restriction.EcoICRI-class.html#size,Variable Bio.Restriction.Restriction.EcoNI.size=Bio.Restriction.Restriction.EcoNI-class.html#size,Variable Bio.Restriction.Restriction.EcoO109I.size=Bio.Restriction.Restriction.EcoO109I-class.html#size,Variable Bio.Restriction.Restriction.EcoO65I.size=Bio.Restriction.Restriction.EcoO65I-class.html#size,Variable Bio.Restriction.Restriction.EcoRI.size=Bio.Restriction.Restriction.EcoRI-class.html#size,Variable Bio.Restriction.Restriction.EcoRII.size=Bio.Restriction.Restriction.EcoRII-class.html#size,Variable Bio.Restriction.Restriction.EcoRV.size=Bio.Restriction.Restriction.EcoRV-class.html#size,Variable Bio.Restriction.Restriction.EcoT14I.size=Bio.Restriction.Restriction.EcoT14I-class.html#size,Variable Bio.Restriction.Restriction.EcoT22I.size=Bio.Restriction.Restriction.EcoT22I-class.html#size,Variable Bio.Restriction.Restriction.EcoT38I.size=Bio.Restriction.Restriction.EcoT38I-class.html#size,Variable Bio.Restriction.Restriction.EgeI.size=Bio.Restriction.Restriction.EgeI-class.html#size,Variable Bio.Restriction.Restriction.EheI.size=Bio.Restriction.Restriction.EheI-class.html#size,Variable Bio.Restriction.Restriction.ErhI.size=Bio.Restriction.Restriction.ErhI-class.html#size,Variable Bio.Restriction.Restriction.EsaBC3I.size=Bio.Restriction.Restriction.EsaBC3I-class.html#size,Variable Bio.Restriction.Restriction.EsaSSI.size=Bio.Restriction.Restriction.EsaSSI-class.html#size,Variable Bio.Restriction.Restriction.Esp3I.size=Bio.Restriction.Restriction.Esp3I-class.html#size,Variable Bio.Restriction.Restriction.EspI.size=Bio.Restriction.Restriction.EspI-class.html#size,Variable Bio.Restriction.Restriction.FaeI.size=Bio.Restriction.Restriction.FaeI-class.html#size,Variable Bio.Restriction.Restriction.FaiI.size=Bio.Restriction.Restriction.FaiI-class.html#size,Variable Bio.Restriction.Restriction.FalI.size=Bio.Restriction.Restriction.FalI-class.html#size,Variable Bio.Restriction.Restriction.FaqI.size=Bio.Restriction.Restriction.FaqI-class.html#size,Variable Bio.Restriction.Restriction.FatI.size=Bio.Restriction.Restriction.FatI-class.html#size,Variable Bio.Restriction.Restriction.FauI.size=Bio.Restriction.Restriction.FauI-class.html#size,Variable Bio.Restriction.Restriction.FauNDI.size=Bio.Restriction.Restriction.FauNDI-class.html#size,Variable Bio.Restriction.Restriction.FbaI.size=Bio.Restriction.Restriction.FbaI-class.html#size,Variable Bio.Restriction.Restriction.FblI.size=Bio.Restriction.Restriction.FblI-class.html#size,Variable Bio.Restriction.Restriction.FinI.size=Bio.Restriction.Restriction.FinI-class.html#size,Variable Bio.Restriction.Restriction.FmuI.size=Bio.Restriction.Restriction.FmuI-class.html#size,Variable Bio.Restriction.Restriction.Fnu4HI.size=Bio.Restriction.Restriction.Fnu4HI-class.html#size,Variable Bio.Restriction.Restriction.FnuDII.size=Bio.Restriction.Restriction.FnuDII-class.html#size,Variable Bio.Restriction.Restriction.FokI.size=Bio.Restriction.Restriction.FokI-class.html#size,Variable Bio.Restriction.Restriction.FriOI.size=Bio.Restriction.Restriction.FriOI-class.html#size,Variable Bio.Restriction.Restriction.FseI.size=Bio.Restriction.Restriction.FseI-class.html#size,Variable Bio.Restriction.Restriction.Fsp4HI.size=Bio.Restriction.Restriction.Fsp4HI-class.html#size,Variable Bio.Restriction.Restriction.FspAI.size=Bio.Restriction.Restriction.FspAI-class.html#size,Variable Bio.Restriction.Restriction.FspBI.size=Bio.Restriction.Restriction.FspBI-class.html#size,Variable Bio.Restriction.Restriction.FspI.size=Bio.Restriction.Restriction.FspI-class.html#size,Variable Bio.Restriction.Restriction.GdiII.size=Bio.Restriction.Restriction.GdiII-class.html#size,Variable Bio.Restriction.Restriction.GlaI.size=Bio.Restriction.Restriction.GlaI-class.html#size,Variable Bio.Restriction.Restriction.GluI.size=Bio.Restriction.Restriction.GluI-class.html#size,Variable Bio.Restriction.Restriction.GsaI.size=Bio.Restriction.Restriction.GsaI-class.html#size,Variable Bio.Restriction.Restriction.GsuI.size=Bio.Restriction.Restriction.GsuI-class.html#size,Variable Bio.Restriction.Restriction.HaeI.size=Bio.Restriction.Restriction.HaeI-class.html#size,Variable Bio.Restriction.Restriction.HaeII.size=Bio.Restriction.Restriction.HaeII-class.html#size,Variable Bio.Restriction.Restriction.HaeIII.size=Bio.Restriction.Restriction.HaeIII-class.html#size,Variable Bio.Restriction.Restriction.HapII.size=Bio.Restriction.Restriction.HapII-class.html#size,Variable Bio.Restriction.Restriction.HgaI.size=Bio.Restriction.Restriction.HgaI-class.html#size,Variable Bio.Restriction.Restriction.HgiAI.size=Bio.Restriction.Restriction.HgiAI-class.html#size,Variable Bio.Restriction.Restriction.HgiCI.size=Bio.Restriction.Restriction.HgiCI-class.html#size,Variable Bio.Restriction.Restriction.HgiEII.size=Bio.Restriction.Restriction.HgiEII-class.html#size,Variable Bio.Restriction.Restriction.HgiJII.size=Bio.Restriction.Restriction.HgiJII-class.html#size,Variable Bio.Restriction.Restriction.HhaI.size=Bio.Restriction.Restriction.HhaI-class.html#size,Variable Bio.Restriction.Restriction.Hin1I.size=Bio.Restriction.Restriction.Hin1I-class.html#size,Variable Bio.Restriction.Restriction.Hin1II.size=Bio.Restriction.Restriction.Hin1II-class.html#size,Variable Bio.Restriction.Restriction.Hin4I.size=Bio.Restriction.Restriction.Hin4I-class.html#size,Variable Bio.Restriction.Restriction.Hin4II.size=Bio.Restriction.Restriction.Hin4II-class.html#size,Variable Bio.Restriction.Restriction.Hin6I.size=Bio.Restriction.Restriction.Hin6I-class.html#size,Variable Bio.Restriction.Restriction.HinP1I.size=Bio.Restriction.Restriction.HinP1I-class.html#size,Variable Bio.Restriction.Restriction.HincII.size=Bio.Restriction.Restriction.HincII-class.html#size,Variable Bio.Restriction.Restriction.HindII.size=Bio.Restriction.Restriction.HindII-class.html#size,Variable Bio.Restriction.Restriction.HindIII.size=Bio.Restriction.Restriction.HindIII-class.html#size,Variable Bio.Restriction.Restriction.HinfI.size=Bio.Restriction.Restriction.HinfI-class.html#size,Variable Bio.Restriction.Restriction.HpaI.size=Bio.Restriction.Restriction.HpaI-class.html#size,Variable Bio.Restriction.Restriction.HpaII.size=Bio.Restriction.Restriction.HpaII-class.html#size,Variable Bio.Restriction.Restriction.HphI.size=Bio.Restriction.Restriction.HphI-class.html#size,Variable Bio.Restriction.Restriction.Hpy166II.size=Bio.Restriction.Restriction.Hpy166II-class.html#size,Variable Bio.Restriction.Restriction.Hpy178III.size=Bio.Restriction.Restriction.Hpy178III-class.html#size,Variable Bio.Restriction.Restriction.Hpy188I.size=Bio.Restriction.Restriction.Hpy188I-class.html#size,Variable Bio.Restriction.Restriction.Hpy188III.size=Bio.Restriction.Restriction.Hpy188III-class.html#size,Variable Bio.Restriction.Restriction.Hpy8I.size=Bio.Restriction.Restriction.Hpy8I-class.html#size,Variable Bio.Restriction.Restriction.Hpy99I.size=Bio.Restriction.Restriction.Hpy99I-class.html#size,Variable Bio.Restriction.Restriction.HpyAV.size=Bio.Restriction.Restriction.HpyAV-class.html#size,Variable Bio.Restriction.Restriction.HpyCH4III.size=Bio.Restriction.Restriction.HpyCH4III-class.html#size,Variable Bio.Restriction.Restriction.HpyCH4IV.size=Bio.Restriction.Restriction.HpyCH4IV-class.html#size,Variable Bio.Restriction.Restriction.HpyCH4V.size=Bio.Restriction.Restriction.HpyCH4V-class.html#size,Variable Bio.Restriction.Restriction.HpyF10VI.size=Bio.Restriction.Restriction.HpyF10VI-class.html#size,Variable Bio.Restriction.Restriction.HpyF3I.size=Bio.Restriction.Restriction.HpyF3I-class.html#size,Variable Bio.Restriction.Restriction.Hsp92I.size=Bio.Restriction.Restriction.Hsp92I-class.html#size,Variable Bio.Restriction.Restriction.Hsp92II.size=Bio.Restriction.Restriction.Hsp92II-class.html#size,Variable Bio.Restriction.Restriction.HspAI.size=Bio.Restriction.Restriction.HspAI-class.html#size,Variable Bio.Restriction.Restriction.ItaI.size=Bio.Restriction.Restriction.ItaI-class.html#size,Variable Bio.Restriction.Restriction.KasI.size=Bio.Restriction.Restriction.KasI-class.html#size,Variable Bio.Restriction.Restriction.KflI.size=Bio.Restriction.Restriction.KflI-class.html#size,Variable Bio.Restriction.Restriction.Kpn2I.size=Bio.Restriction.Restriction.Kpn2I-class.html#size,Variable Bio.Restriction.Restriction.KpnI.size=Bio.Restriction.Restriction.KpnI-class.html#size,Variable Bio.Restriction.Restriction.Ksp22I.size=Bio.Restriction.Restriction.Ksp22I-class.html#size,Variable Bio.Restriction.Restriction.Ksp632I.size=Bio.Restriction.Restriction.Ksp632I-class.html#size,Variable Bio.Restriction.Restriction.KspAI.size=Bio.Restriction.Restriction.KspAI-class.html#size,Variable Bio.Restriction.Restriction.KspI.size=Bio.Restriction.Restriction.KspI-class.html#size,Variable Bio.Restriction.Restriction.Kzo9I.size=Bio.Restriction.Restriction.Kzo9I-class.html#size,Variable Bio.Restriction.Restriction.LguI.size=Bio.Restriction.Restriction.LguI-class.html#size,Variable Bio.Restriction.Restriction.LpnI.size=Bio.Restriction.Restriction.LpnI-class.html#size,Variable Bio.Restriction.Restriction.Lsp1109I.size=Bio.Restriction.Restriction.Lsp1109I-class.html#size,Variable Bio.Restriction.Restriction.LweI.size=Bio.Restriction.Restriction.LweI-class.html#size,Variable Bio.Restriction.Restriction.MabI.size=Bio.Restriction.Restriction.MabI-class.html#size,Variable Bio.Restriction.Restriction.MaeI.size=Bio.Restriction.Restriction.MaeI-class.html#size,Variable Bio.Restriction.Restriction.MaeII.size=Bio.Restriction.Restriction.MaeII-class.html#size,Variable Bio.Restriction.Restriction.MaeIII.size=Bio.Restriction.Restriction.MaeIII-class.html#size,Variable Bio.Restriction.Restriction.MalI.size=Bio.Restriction.Restriction.MalI-class.html#size,Variable Bio.Restriction.Restriction.MaqI.size=Bio.Restriction.Restriction.MaqI-class.html#size,Variable Bio.Restriction.Restriction.MauBI.size=Bio.Restriction.Restriction.MauBI-class.html#size,Variable Bio.Restriction.Restriction.MbiI.size=Bio.Restriction.Restriction.MbiI-class.html#size,Variable Bio.Restriction.Restriction.MboI.size=Bio.Restriction.Restriction.MboI-class.html#size,Variable Bio.Restriction.Restriction.MboII.size=Bio.Restriction.Restriction.MboII-class.html#size,Variable Bio.Restriction.Restriction.McaTI.size=Bio.Restriction.Restriction.McaTI-class.html#size,Variable Bio.Restriction.Restriction.McrI.size=Bio.Restriction.Restriction.McrI-class.html#size,Variable Bio.Restriction.Restriction.MfeI.size=Bio.Restriction.Restriction.MfeI-class.html#size,Variable Bio.Restriction.Restriction.MflI.size=Bio.Restriction.Restriction.MflI-class.html#size,Variable Bio.Restriction.Restriction.MhlI.size=Bio.Restriction.Restriction.MhlI-class.html#size,Variable Bio.Restriction.Restriction.MjaIV.size=Bio.Restriction.Restriction.MjaIV-class.html#size,Variable Bio.Restriction.Restriction.MlsI.size=Bio.Restriction.Restriction.MlsI-class.html#size,Variable Bio.Restriction.Restriction.MluI.size=Bio.Restriction.Restriction.MluI-class.html#size,Variable Bio.Restriction.Restriction.MluNI.size=Bio.Restriction.Restriction.MluNI-class.html#size,Variable Bio.Restriction.Restriction.Mly113I.size=Bio.Restriction.Restriction.Mly113I-class.html#size,Variable Bio.Restriction.Restriction.MlyI.size=Bio.Restriction.Restriction.MlyI-class.html#size,Variable Bio.Restriction.Restriction.MmeI.size=Bio.Restriction.Restriction.MmeI-class.html#size,Variable Bio.Restriction.Restriction.MnlI.size=Bio.Restriction.Restriction.MnlI-class.html#size,Variable Bio.Restriction.Restriction.Mph1103I.size=Bio.Restriction.Restriction.Mph1103I-class.html#size,Variable Bio.Restriction.Restriction.MreI.size=Bio.Restriction.Restriction.MreI-class.html#size,Variable Bio.Restriction.Restriction.MroI.size=Bio.Restriction.Restriction.MroI-class.html#size,Variable Bio.Restriction.Restriction.MroNI.size=Bio.Restriction.Restriction.MroNI-class.html#size,Variable Bio.Restriction.Restriction.MroXI.size=Bio.Restriction.Restriction.MroXI-class.html#size,Variable Bio.Restriction.Restriction.MscI.size=Bio.Restriction.Restriction.MscI-class.html#size,Variable Bio.Restriction.Restriction.MseI.size=Bio.Restriction.Restriction.MseI-class.html#size,Variable Bio.Restriction.Restriction.MslI.size=Bio.Restriction.Restriction.MslI-class.html#size,Variable Bio.Restriction.Restriction.Msp20I.size=Bio.Restriction.Restriction.Msp20I-class.html#size,Variable Bio.Restriction.Restriction.MspA1I.size=Bio.Restriction.Restriction.MspA1I-class.html#size,Variable Bio.Restriction.Restriction.MspCI.size=Bio.Restriction.Restriction.MspCI-class.html#size,Variable Bio.Restriction.Restriction.MspI.size=Bio.Restriction.Restriction.MspI-class.html#size,Variable Bio.Restriction.Restriction.MspR9I.size=Bio.Restriction.Restriction.MspR9I-class.html#size,Variable Bio.Restriction.Restriction.MssI.size=Bio.Restriction.Restriction.MssI-class.html#size,Variable Bio.Restriction.Restriction.MstI.size=Bio.Restriction.Restriction.MstI-class.html#size,Variable Bio.Restriction.Restriction.MunI.size=Bio.Restriction.Restriction.MunI-class.html#size,Variable Bio.Restriction.Restriction.Mva1269I.size=Bio.Restriction.Restriction.Mva1269I-class.html#size,Variable Bio.Restriction.Restriction.MvaI.size=Bio.Restriction.Restriction.MvaI-class.html#size,Variable Bio.Restriction.Restriction.MvnI.size=Bio.Restriction.Restriction.MvnI-class.html#size,Variable Bio.Restriction.Restriction.MvrI.size=Bio.Restriction.Restriction.MvrI-class.html#size,Variable Bio.Restriction.Restriction.MwoI.size=Bio.Restriction.Restriction.MwoI-class.html#size,Variable Bio.Restriction.Restriction.NaeI.size=Bio.Restriction.Restriction.NaeI-class.html#size,Variable Bio.Restriction.Restriction.NarI.size=Bio.Restriction.Restriction.NarI-class.html#size,Variable Bio.Restriction.Restriction.NciI.size=Bio.Restriction.Restriction.NciI-class.html#size,Variable Bio.Restriction.Restriction.NcoI.size=Bio.Restriction.Restriction.NcoI-class.html#size,Variable Bio.Restriction.Restriction.NdeI.size=Bio.Restriction.Restriction.NdeI-class.html#size,Variable Bio.Restriction.Restriction.NdeII.size=Bio.Restriction.Restriction.NdeII-class.html#size,Variable Bio.Restriction.Restriction.NgoAVIII.size=Bio.Restriction.Restriction.NgoAVIII-class.html#size,Variable Bio.Restriction.Restriction.NgoMIV.size=Bio.Restriction.Restriction.NgoMIV-class.html#size,Variable Bio.Restriction.Restriction.NhaXI.size=Bio.Restriction.Restriction.NhaXI-class.html#size,Variable Bio.Restriction.Restriction.NheI.size=Bio.Restriction.Restriction.NheI-class.html#size,Variable Bio.Restriction.Restriction.NlaCI.size=Bio.Restriction.Restriction.NlaCI-class.html#size,Variable Bio.Restriction.Restriction.NlaIII.size=Bio.Restriction.Restriction.NlaIII-class.html#size,Variable Bio.Restriction.Restriction.NlaIV.size=Bio.Restriction.Restriction.NlaIV-class.html#size,Variable Bio.Restriction.Restriction.Nli3877I.size=Bio.Restriction.Restriction.Nli3877I-class.html#size,Variable Bio.Restriction.Restriction.NmeAIII.size=Bio.Restriction.Restriction.NmeAIII-class.html#size,Variable Bio.Restriction.Restriction.NmeDI.size=Bio.Restriction.Restriction.NmeDI-class.html#size,Variable Bio.Restriction.Restriction.NmuCI.size=Bio.Restriction.Restriction.NmuCI-class.html#size,Variable Bio.Restriction.Restriction.NotI.size=Bio.Restriction.Restriction.NotI-class.html#size,Variable Bio.Restriction.Restriction.NruI.size=Bio.Restriction.Restriction.NruI-class.html#size,Variable Bio.Restriction.Restriction.NsbI.size=Bio.Restriction.Restriction.NsbI-class.html#size,Variable Bio.Restriction.Restriction.NsiI.size=Bio.Restriction.Restriction.NsiI-class.html#size,Variable Bio.Restriction.Restriction.NspBII.size=Bio.Restriction.Restriction.NspBII-class.html#size,Variable Bio.Restriction.Restriction.NspI.size=Bio.Restriction.Restriction.NspI-class.html#size,Variable Bio.Restriction.Restriction.NspV.size=Bio.Restriction.Restriction.NspV-class.html#size,Variable Bio.Restriction.Restriction.OliI.size=Bio.Restriction.Restriction.OliI-class.html#size,Variable Bio.Restriction.Restriction.PabI.size=Bio.Restriction.Restriction.PabI-class.html#size,Variable Bio.Restriction.Restriction.PacI.size=Bio.Restriction.Restriction.PacI-class.html#size,Variable Bio.Restriction.Restriction.PaeI.size=Bio.Restriction.Restriction.PaeI-class.html#size,Variable Bio.Restriction.Restriction.PaeR7I.size=Bio.Restriction.Restriction.PaeR7I-class.html#size,Variable Bio.Restriction.Restriction.PagI.size=Bio.Restriction.Restriction.PagI-class.html#size,Variable Bio.Restriction.Restriction.PalAI.size=Bio.Restriction.Restriction.PalAI-class.html#size,Variable Bio.Restriction.Restriction.PasI.size=Bio.Restriction.Restriction.PasI-class.html#size,Variable Bio.Restriction.Restriction.PauI.size=Bio.Restriction.Restriction.PauI-class.html#size,Variable Bio.Restriction.Restriction.PceI.size=Bio.Restriction.Restriction.PceI-class.html#size,Variable Bio.Restriction.Restriction.PciI.size=Bio.Restriction.Restriction.PciI-class.html#size,Variable Bio.Restriction.Restriction.PciSI.size=Bio.Restriction.Restriction.PciSI-class.html#size,Variable Bio.Restriction.Restriction.PctI.size=Bio.Restriction.Restriction.PctI-class.html#size,Variable Bio.Restriction.Restriction.PdiI.size=Bio.Restriction.Restriction.PdiI-class.html#size,Variable Bio.Restriction.Restriction.PdmI.size=Bio.Restriction.Restriction.PdmI-class.html#size,Variable Bio.Restriction.Restriction.PfeI.size=Bio.Restriction.Restriction.PfeI-class.html#size,Variable Bio.Restriction.Restriction.Pfl1108I.size=Bio.Restriction.Restriction.Pfl1108I-class.html#size,Variable Bio.Restriction.Restriction.Pfl23II.size=Bio.Restriction.Restriction.Pfl23II-class.html#size,Variable Bio.Restriction.Restriction.PflFI.size=Bio.Restriction.Restriction.PflFI-class.html#size,Variable Bio.Restriction.Restriction.PflMI.size=Bio.Restriction.Restriction.PflMI-class.html#size,Variable Bio.Restriction.Restriction.PfoI.size=Bio.Restriction.Restriction.PfoI-class.html#size,Variable Bio.Restriction.Restriction.PhoI.size=Bio.Restriction.Restriction.PhoI-class.html#size,Variable Bio.Restriction.Restriction.PinAI.size=Bio.Restriction.Restriction.PinAI-class.html#size,Variable Bio.Restriction.Restriction.PlaDI.size=Bio.Restriction.Restriction.PlaDI-class.html#size,Variable Bio.Restriction.Restriction.Ple19I.size=Bio.Restriction.Restriction.Ple19I-class.html#size,Variable Bio.Restriction.Restriction.PleI.size=Bio.Restriction.Restriction.PleI-class.html#size,Variable Bio.Restriction.Restriction.PmaCI.size=Bio.Restriction.Restriction.PmaCI-class.html#size,Variable Bio.Restriction.Restriction.PmeI.size=Bio.Restriction.Restriction.PmeI-class.html#size,Variable Bio.Restriction.Restriction.PmlI.size=Bio.Restriction.Restriction.PmlI-class.html#size,Variable Bio.Restriction.Restriction.PpiI.size=Bio.Restriction.Restriction.PpiI-class.html#size,Variable Bio.Restriction.Restriction.PpsI.size=Bio.Restriction.Restriction.PpsI-class.html#size,Variable Bio.Restriction.Restriction.Ppu10I.size=Bio.Restriction.Restriction.Ppu10I-class.html#size,Variable Bio.Restriction.Restriction.Ppu21I.size=Bio.Restriction.Restriction.Ppu21I-class.html#size,Variable Bio.Restriction.Restriction.PpuMI.size=Bio.Restriction.Restriction.PpuMI-class.html#size,Variable Bio.Restriction.Restriction.PscI.size=Bio.Restriction.Restriction.PscI-class.html#size,Variable Bio.Restriction.Restriction.PshAI.size=Bio.Restriction.Restriction.PshAI-class.html#size,Variable Bio.Restriction.Restriction.PshBI.size=Bio.Restriction.Restriction.PshBI-class.html#size,Variable Bio.Restriction.Restriction.PsiI.size=Bio.Restriction.Restriction.PsiI-class.html#size,Variable Bio.Restriction.Restriction.Psp03I.size=Bio.Restriction.Restriction.Psp03I-class.html#size,Variable Bio.Restriction.Restriction.Psp124BI.size=Bio.Restriction.Restriction.Psp124BI-class.html#size,Variable Bio.Restriction.Restriction.Psp1406I.size=Bio.Restriction.Restriction.Psp1406I-class.html#size,Variable Bio.Restriction.Restriction.Psp5II.size=Bio.Restriction.Restriction.Psp5II-class.html#size,Variable Bio.Restriction.Restriction.Psp6I.size=Bio.Restriction.Restriction.Psp6I-class.html#size,Variable Bio.Restriction.Restriction.PspCI.size=Bio.Restriction.Restriction.PspCI-class.html#size,Variable Bio.Restriction.Restriction.PspEI.size=Bio.Restriction.Restriction.PspEI-class.html#size,Variable Bio.Restriction.Restriction.PspGI.size=Bio.Restriction.Restriction.PspGI-class.html#size,Variable Bio.Restriction.Restriction.PspLI.size=Bio.Restriction.Restriction.PspLI-class.html#size,Variable Bio.Restriction.Restriction.PspN4I.size=Bio.Restriction.Restriction.PspN4I-class.html#size,Variable Bio.Restriction.Restriction.PspOMI.size=Bio.Restriction.Restriction.PspOMI-class.html#size,Variable Bio.Restriction.Restriction.PspOMII.size=Bio.Restriction.Restriction.PspOMII-class.html#size,Variable Bio.Restriction.Restriction.PspPI.size=Bio.Restriction.Restriction.PspPI-class.html#size,Variable Bio.Restriction.Restriction.PspPPI.size=Bio.Restriction.Restriction.PspPPI-class.html#size,Variable Bio.Restriction.Restriction.PspPRI.size=Bio.Restriction.Restriction.PspPRI-class.html#size,Variable Bio.Restriction.Restriction.PspXI.size=Bio.Restriction.Restriction.PspXI-class.html#size,Variable Bio.Restriction.Restriction.PsrI.size=Bio.Restriction.Restriction.PsrI-class.html#size,Variable Bio.Restriction.Restriction.PssI.size=Bio.Restriction.Restriction.PssI-class.html#size,Variable Bio.Restriction.Restriction.PstI.size=Bio.Restriction.Restriction.PstI-class.html#size,Variable Bio.Restriction.Restriction.PsuI.size=Bio.Restriction.Restriction.PsuI-class.html#size,Variable Bio.Restriction.Restriction.PsyI.size=Bio.Restriction.Restriction.PsyI-class.html#size,Variable Bio.Restriction.Restriction.PteI.size=Bio.Restriction.Restriction.PteI-class.html#size,Variable Bio.Restriction.Restriction.PvuI.size=Bio.Restriction.Restriction.PvuI-class.html#size,Variable Bio.Restriction.Restriction.PvuII.size=Bio.Restriction.Restriction.PvuII-class.html#size,Variable Bio.Restriction.Restriction.RcaI.size=Bio.Restriction.Restriction.RcaI-class.html#size,Variable Bio.Restriction.Restriction.RceI.size=Bio.Restriction.Restriction.RceI-class.html#size,Variable Bio.Restriction.Restriction.RgaI.size=Bio.Restriction.Restriction.RgaI-class.html#size,Variable Bio.Restriction.Restriction.RigI.size=Bio.Restriction.Restriction.RigI-class.html#size,Variable Bio.Restriction.Restriction.RleAI.size=Bio.Restriction.Restriction.RleAI-class.html#size,Variable Bio.Restriction.Restriction.RpaB5I.size=Bio.Restriction.Restriction.RpaB5I-class.html#size,Variable Bio.Restriction.Restriction.RruI.size=Bio.Restriction.Restriction.RruI-class.html#size,Variable Bio.Restriction.Restriction.RsaI.size=Bio.Restriction.Restriction.RsaI-class.html#size,Variable Bio.Restriction.Restriction.RsaNI.size=Bio.Restriction.Restriction.RsaNI-class.html#size,Variable Bio.Restriction.Restriction.RseI.size=Bio.Restriction.Restriction.RseI-class.html#size,Variable Bio.Restriction.Restriction.Rsr2I.size=Bio.Restriction.Restriction.Rsr2I-class.html#size,Variable Bio.Restriction.Restriction.RsrII.size=Bio.Restriction.Restriction.RsrII-class.html#size,Variable Bio.Restriction.Restriction.SacI.size=Bio.Restriction.Restriction.SacI-class.html#size,Variable Bio.Restriction.Restriction.SacII.size=Bio.Restriction.Restriction.SacII-class.html#size,Variable Bio.Restriction.Restriction.SalI.size=Bio.Restriction.Restriction.SalI-class.html#size,Variable Bio.Restriction.Restriction.SanDI.size=Bio.Restriction.Restriction.SanDI-class.html#size,Variable Bio.Restriction.Restriction.SapI.size=Bio.Restriction.Restriction.SapI-class.html#size,Variable Bio.Restriction.Restriction.SaqAI.size=Bio.Restriction.Restriction.SaqAI-class.html#size,Variable Bio.Restriction.Restriction.SatI.size=Bio.Restriction.Restriction.SatI-class.html#size,Variable Bio.Restriction.Restriction.Sau3AI.size=Bio.Restriction.Restriction.Sau3AI-class.html#size,Variable Bio.Restriction.Restriction.Sau96I.size=Bio.Restriction.Restriction.Sau96I-class.html#size,Variable Bio.Restriction.Restriction.SauI.size=Bio.Restriction.Restriction.SauI-class.html#size,Variable Bio.Restriction.Restriction.SbfI.size=Bio.Restriction.Restriction.SbfI-class.html#size,Variable Bio.Restriction.Restriction.ScaI.size=Bio.Restriction.Restriction.ScaI-class.html#size,Variable Bio.Restriction.Restriction.SchI.size=Bio.Restriction.Restriction.SchI-class.html#size,Variable Bio.Restriction.Restriction.SciI.size=Bio.Restriction.Restriction.SciI-class.html#size,Variable Bio.Restriction.Restriction.ScrFI.size=Bio.Restriction.Restriction.ScrFI-class.html#size,Variable Bio.Restriction.Restriction.SdaI.size=Bio.Restriction.Restriction.SdaI-class.html#size,Variable Bio.Restriction.Restriction.SdeAI.size=Bio.Restriction.Restriction.SdeAI-class.html#size,Variable Bio.Restriction.Restriction.SdeOSI.size=Bio.Restriction.Restriction.SdeOSI-class.html#size,Variable Bio.Restriction.Restriction.SduI.size=Bio.Restriction.Restriction.SduI-class.html#size,Variable Bio.Restriction.Restriction.SecI.size=Bio.Restriction.Restriction.SecI-class.html#size,Variable Bio.Restriction.Restriction.SelI.size=Bio.Restriction.Restriction.SelI-class.html#size,Variable Bio.Restriction.Restriction.SetI.size=Bio.Restriction.Restriction.SetI-class.html#size,Variable Bio.Restriction.Restriction.SexAI.size=Bio.Restriction.Restriction.SexAI-class.html#size,Variable Bio.Restriction.Restriction.SfaAI.size=Bio.Restriction.Restriction.SfaAI-class.html#size,Variable Bio.Restriction.Restriction.SfaNI.size=Bio.Restriction.Restriction.SfaNI-class.html#size,Variable Bio.Restriction.Restriction.SfcI.size=Bio.Restriction.Restriction.SfcI-class.html#size,Variable Bio.Restriction.Restriction.SfeI.size=Bio.Restriction.Restriction.SfeI-class.html#size,Variable Bio.Restriction.Restriction.SfiI.size=Bio.Restriction.Restriction.SfiI-class.html#size,Variable Bio.Restriction.Restriction.SfoI.size=Bio.Restriction.Restriction.SfoI-class.html#size,Variable Bio.Restriction.Restriction.Sfr274I.size=Bio.Restriction.Restriction.Sfr274I-class.html#size,Variable Bio.Restriction.Restriction.Sfr303I.size=Bio.Restriction.Restriction.Sfr303I-class.html#size,Variable Bio.Restriction.Restriction.SfuI.size=Bio.Restriction.Restriction.SfuI-class.html#size,Variable Bio.Restriction.Restriction.SgfI.size=Bio.Restriction.Restriction.SgfI-class.html#size,Variable Bio.Restriction.Restriction.SgrAI.size=Bio.Restriction.Restriction.SgrAI-class.html#size,Variable Bio.Restriction.Restriction.SgrBI.size=Bio.Restriction.Restriction.SgrBI-class.html#size,Variable Bio.Restriction.Restriction.SgrDI.size=Bio.Restriction.Restriction.SgrDI-class.html#size,Variable Bio.Restriction.Restriction.SgsI.size=Bio.Restriction.Restriction.SgsI-class.html#size,Variable Bio.Restriction.Restriction.SimI.size=Bio.Restriction.Restriction.SimI-class.html#size,Variable Bio.Restriction.Restriction.SinI.size=Bio.Restriction.Restriction.SinI-class.html#size,Variable Bio.Restriction.Restriction.SlaI.size=Bio.Restriction.Restriction.SlaI-class.html#size,Variable Bio.Restriction.Restriction.SmaI.size=Bio.Restriction.Restriction.SmaI-class.html#size,Variable Bio.Restriction.Restriction.SmiI.size=Bio.Restriction.Restriction.SmiI-class.html#size,Variable Bio.Restriction.Restriction.SmiMI.size=Bio.Restriction.Restriction.SmiMI-class.html#size,Variable Bio.Restriction.Restriction.SmlI.size=Bio.Restriction.Restriction.SmlI-class.html#size,Variable Bio.Restriction.Restriction.SmoI.size=Bio.Restriction.Restriction.SmoI-class.html#size,Variable Bio.Restriction.Restriction.SmuI.size=Bio.Restriction.Restriction.SmuI-class.html#size,Variable Bio.Restriction.Restriction.SnaBI.size=Bio.Restriction.Restriction.SnaBI-class.html#size,Variable Bio.Restriction.Restriction.SnaI.size=Bio.Restriction.Restriction.SnaI-class.html#size,Variable Bio.Restriction.Restriction.SpeI.size=Bio.Restriction.Restriction.SpeI-class.html#size,Variable Bio.Restriction.Restriction.SphI.size=Bio.Restriction.Restriction.SphI-class.html#size,Variable Bio.Restriction.Restriction.SplI.size=Bio.Restriction.Restriction.SplI-class.html#size,Variable Bio.Restriction.Restriction.SpoDI.size=Bio.Restriction.Restriction.SpoDI-class.html#size,Variable Bio.Restriction.Restriction.SrfI.size=Bio.Restriction.Restriction.SrfI-class.html#size,Variable Bio.Restriction.Restriction.Sse232I.size=Bio.Restriction.Restriction.Sse232I-class.html#size,Variable Bio.Restriction.Restriction.Sse8387I.size=Bio.Restriction.Restriction.Sse8387I-class.html#size,Variable Bio.Restriction.Restriction.Sse8647I.size=Bio.Restriction.Restriction.Sse8647I-class.html#size,Variable Bio.Restriction.Restriction.Sse9I.size=Bio.Restriction.Restriction.Sse9I-class.html#size,Variable Bio.Restriction.Restriction.SseBI.size=Bio.Restriction.Restriction.SseBI-class.html#size,Variable Bio.Restriction.Restriction.SsiI.size=Bio.Restriction.Restriction.SsiI-class.html#size,Variable Bio.Restriction.Restriction.SspD5I.size=Bio.Restriction.Restriction.SspD5I-class.html#size,Variable Bio.Restriction.Restriction.SspDI.size=Bio.Restriction.Restriction.SspDI-class.html#size,Variable Bio.Restriction.Restriction.SspI.size=Bio.Restriction.Restriction.SspI-class.html#size,Variable Bio.Restriction.Restriction.SstI.size=Bio.Restriction.Restriction.SstI-class.html#size,Variable Bio.Restriction.Restriction.SstII.size=Bio.Restriction.Restriction.SstII-class.html#size,Variable Bio.Restriction.Restriction.Sth132I.size=Bio.Restriction.Restriction.Sth132I-class.html#size,Variable Bio.Restriction.Restriction.Sth302II.size=Bio.Restriction.Restriction.Sth302II-class.html#size,Variable Bio.Restriction.Restriction.StrI.size=Bio.Restriction.Restriction.StrI-class.html#size,Variable Bio.Restriction.Restriction.StsI.size=Bio.Restriction.Restriction.StsI-class.html#size,Variable Bio.Restriction.Restriction.StuI.size=Bio.Restriction.Restriction.StuI-class.html#size,Variable Bio.Restriction.Restriction.StyD4I.size=Bio.Restriction.Restriction.StyD4I-class.html#size,Variable Bio.Restriction.Restriction.StyI.size=Bio.Restriction.Restriction.StyI-class.html#size,Variable 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Bio.Restriction.Restriction.DdeI.size
Bio.Restriction.Restriction.DinI.size
Bio.Restriction.Restriction.DpnI.size
Bio.Restriction.Restriction.DpnII.size
Bio.Restriction.Restriction.DraI.size
Bio.Restriction.Restriction.DraII.size
Bio.Restriction.Restriction.DraIII.size
Bio.Restriction.Restriction.DraRI.size
Bio.Restriction.Restriction.DrdI.size
Bio.Restriction.Restriction.DrdII.size
Bio.Restriction.Restriction.DrdIV.size
Bio.Restriction.Restriction.DriI.size
Bio.Restriction.Restriction.DsaI.size
Bio.Restriction.Restriction.DseDI.size
Bio.Restriction.Restriction.EaeI.size
Bio.Restriction.Restriction.EagI.size
Bio.Restriction.Restriction.Eam1104I.size
Bio.Restriction.Restriction.Eam1105I.size
Bio.Restriction.Restriction.EarI.size
Bio.Restriction.Restriction.EciI.size
Bio.Restriction.Restriction.Ecl136II.size
Bio.Restriction.Restriction.EclXI.size
Bio.Restriction.Restriction.Eco105I.size
Bio.Restriction.Restriction.Eco130I.size
Bio.Restriction.Restriction.Eco147I.size
Bio.Restriction.Restriction.Eco24I.size
Bio.Restriction.Restriction.Eco31I.size
Bio.Restriction.Restriction.Eco32I.size
Bio.Restriction.Restriction.Eco47I.size
Bio.Restriction.Restriction.Eco47III.size
Bio.Restriction.Restriction.Eco52I.size
Bio.Restriction.Restriction.Eco53kI.size
Bio.Restriction.Restriction.Eco57I.size
Bio.Restriction.Restriction.Eco57MI.size
Bio.Restriction.Restriction.Eco72I.size
Bio.Restriction.Restriction.Eco81I.size
Bio.Restriction.Restriction.Eco88I.size
Bio.Restriction.Restriction.Eco91I.size
Bio.Restriction.Restriction.EcoHI.size
Bio.Restriction.Restriction.EcoICRI.size
Bio.Restriction.Restriction.EcoNI.size
Bio.Restriction.Restriction.EcoO109I.size
Bio.Restriction.Restriction.EcoO65I.size
Bio.Restriction.Restriction.EcoRI.size
Bio.Restriction.Restriction.EcoRII.size
Bio.Restriction.Restriction.EcoRV.size
Bio.Restriction.Restriction.EcoT14I.size
Bio.Restriction.Restriction.EcoT22I.size
Bio.Restriction.Restriction.EcoT38I.size
Bio.Restriction.Restriction.EgeI.size
Bio.Restriction.Restriction.EheI.size
Bio.Restriction.Restriction.ErhI.size
Bio.Restriction.Restriction.EsaBC3I.size
Bio.Restriction.Restriction.EsaSSI.size
Bio.Restriction.Restriction.Esp3I.size
Bio.Restriction.Restriction.EspI.size
Bio.Restriction.Restriction.FaeI.size
Bio.Restriction.Restriction.FaiI.size
Bio.Restriction.Restriction.FalI.size
Bio.Restriction.Restriction.FaqI.size
Bio.Restriction.Restriction.FatI.size
Bio.Restriction.Restriction.FauI.size
Bio.Restriction.Restriction.FauNDI.size
Bio.Restriction.Restriction.FbaI.size
Bio.Restriction.Restriction.FblI.size
Bio.Restriction.Restriction.FinI.size
Bio.Restriction.Restriction.FmuI.size
Bio.Restriction.Restriction.Fnu4HI.size
Bio.Restriction.Restriction.FnuDII.size
Bio.Restriction.Restriction.FokI.size
Bio.Restriction.Restriction.FriOI.size
Bio.Restriction.Restriction.FseI.size
Bio.Restriction.Restriction.Fsp4HI.size
Bio.Restriction.Restriction.FspAI.size
Bio.Restriction.Restriction.FspBI.size
Bio.Restriction.Restriction.FspI.size
Bio.Restriction.Restriction.GdiII.size
Bio.Restriction.Restriction.GlaI.size
Bio.Restriction.Restriction.GluI.size
Bio.Restriction.Restriction.GsaI.size
Bio.Restriction.Restriction.GsuI.size
Bio.Restriction.Restriction.HaeI.size
Bio.Restriction.Restriction.HaeII.size
Bio.Restriction.Restriction.HaeIII.size
Bio.Restriction.Restriction.HapII.size
Bio.Restriction.Restriction.HgaI.size
Bio.Restriction.Restriction.HgiAI.size
Bio.Restriction.Restriction.HgiCI.size
Bio.Restriction.Restriction.HgiEII.size
Bio.Restriction.Restriction.HgiJII.size
Bio.Restriction.Restriction.HhaI.size
Bio.Restriction.Restriction.Hin1I.size
Bio.Restriction.Restriction.Hin1II.size
Bio.Restriction.Restriction.Hin4I.size
Bio.Restriction.Restriction.Hin4II.size
Bio.Restriction.Restriction.Hin6I.size
Bio.Restriction.Restriction.HinP1I.size
Bio.Restriction.Restriction.HincII.size
Bio.Restriction.Restriction.HindII.size
Bio.Restriction.Restriction.HindIII.size
Bio.Restriction.Restriction.HinfI.size
Bio.Restriction.Restriction.HpaI.size
Bio.Restriction.Restriction.HpaII.size
Bio.Restriction.Restriction.HphI.size
Bio.Restriction.Restriction.Hpy166II.size
Bio.Restriction.Restriction.Hpy178III.size
Bio.Restriction.Restriction.Hpy188I.size
Bio.Restriction.Restriction.Hpy188III.size
Bio.Restriction.Restriction.Hpy8I.size
Bio.Restriction.Restriction.Hpy99I.size
Bio.Restriction.Restriction.HpyAV.size
Bio.Restriction.Restriction.HpyCH4III.size
Bio.Restriction.Restriction.HpyCH4IV.size
Bio.Restriction.Restriction.HpyCH4V.size
Bio.Restriction.Restriction.HpyF10VI.size
Bio.Restriction.Restriction.HpyF3I.size
Bio.Restriction.Restriction.Hsp92I.size
Bio.Restriction.Restriction.Hsp92II.size
Bio.Restriction.Restriction.HspAI.size
Bio.Restriction.Restriction.ItaI.size
Bio.Restriction.Restriction.KasI.size
Bio.Restriction.Restriction.KflI.size
Bio.Restriction.Restriction.Kpn2I.size
Bio.Restriction.Restriction.KpnI.size
Bio.Restriction.Restriction.Ksp22I.size
Bio.Restriction.Restriction.Ksp632I.size
Bio.Restriction.Restriction.KspAI.size
Bio.Restriction.Restriction.KspI.size
Bio.Restriction.Restriction.Kzo9I.size
Bio.Restriction.Restriction.LguI.size
Bio.Restriction.Restriction.LpnI.size
Bio.Restriction.Restriction.Lsp1109I.size
Bio.Restriction.Restriction.LweI.size
Bio.Restriction.Restriction.MabI.size
Bio.Restriction.Restriction.MaeI.size
Bio.Restriction.Restriction.MaeII.size
Bio.Restriction.Restriction.MaeIII.size
Bio.Restriction.Restriction.MalI.size
Bio.Restriction.Restriction.MaqI.size
Bio.Restriction.Restriction.MauBI.size
Bio.Restriction.Restriction.MbiI.size
Bio.Restriction.Restriction.MboI.size
Bio.Restriction.Restriction.MboII.size
Bio.Restriction.Restriction.McaTI.size
Bio.Restriction.Restriction.McrI.size
Bio.Restriction.Restriction.MfeI.size
Bio.Restriction.Restriction.MflI.size
Bio.Restriction.Restriction.MhlI.size
Bio.Restriction.Restriction.MjaIV.size
Bio.Restriction.Restriction.MlsI.size
Bio.Restriction.Restriction.MluI.size
Bio.Restriction.Restriction.MluNI.size
Bio.Restriction.Restriction.Mly113I.size
Bio.Restriction.Restriction.MlyI.size
Bio.Restriction.Restriction.MmeI.size
Bio.Restriction.Restriction.MnlI.size
Bio.Restriction.Restriction.Mph1103I.size
Bio.Restriction.Restriction.MreI.size
Bio.Restriction.Restriction.MroI.size
Bio.Restriction.Restriction.MroNI.size
Bio.Restriction.Restriction.MroXI.size
Bio.Restriction.Restriction.MscI.size
Bio.Restriction.Restriction.MseI.size
Bio.Restriction.Restriction.MslI.size
Bio.Restriction.Restriction.Msp20I.size
Bio.Restriction.Restriction.MspA1I.size
Bio.Restriction.Restriction.MspCI.size
Bio.Restriction.Restriction.MspI.size
Bio.Restriction.Restriction.MspR9I.size
Bio.Restriction.Restriction.MssI.size
Bio.Restriction.Restriction.MstI.size
Bio.Restriction.Restriction.MunI.size
Bio.Restriction.Restriction.Mva1269I.size
Bio.Restriction.Restriction.MvaI.size
Bio.Restriction.Restriction.MvnI.size
Bio.Restriction.Restriction.MvrI.size
Bio.Restriction.Restriction.MwoI.size
Bio.Restriction.Restriction.NaeI.size
Bio.Restriction.Restriction.NarI.size
Bio.Restriction.Restriction.NciI.size
Bio.Restriction.Restriction.NcoI.size
Bio.Restriction.Restriction.NdeI.size
Bio.Restriction.Restriction.NdeII.size
Bio.Restriction.Restriction.NgoAVIII.size
Bio.Restriction.Restriction.NgoMIV.size
Bio.Restriction.Restriction.NhaXI.size
Bio.Restriction.Restriction.NheI.size
Bio.Restriction.Restriction.NlaCI.size
Bio.Restriction.Restriction.NlaIII.size
Bio.Restriction.Restriction.NlaIV.size
Bio.Restriction.Restriction.Nli3877I.size
Bio.Restriction.Restriction.NmeAIII.size
Bio.Restriction.Restriction.NmeDI.size
Bio.Restriction.Restriction.NmuCI.size
Bio.Restriction.Restriction.NotI.size
Bio.Restriction.Restriction.NruI.size
Bio.Restriction.Restriction.NsbI.size
Bio.Restriction.Restriction.NsiI.size
Bio.Restriction.Restriction.NspBII.size
Bio.Restriction.Restriction.NspI.size
Bio.Restriction.Restriction.NspV.size
Bio.Restriction.Restriction.OliI.size
Bio.Restriction.Restriction.PabI.size
Bio.Restriction.Restriction.PacI.size
Bio.Restriction.Restriction.PaeI.size
Bio.Restriction.Restriction.PaeR7I.size
Bio.Restriction.Restriction.PagI.size
Bio.Restriction.Restriction.PalAI.size
Bio.Restriction.Restriction.PasI.size
Bio.Restriction.Restriction.PauI.size
Bio.Restriction.Restriction.PceI.size
Bio.Restriction.Restriction.PciI.size
Bio.Restriction.Restriction.PciSI.size
Bio.Restriction.Restriction.PctI.size
Bio.Restriction.Restriction.PdiI.size
Bio.Restriction.Restriction.PdmI.size
Bio.Restriction.Restriction.PfeI.size
Bio.Restriction.Restriction.Pfl1108I.size
Bio.Restriction.Restriction.Pfl23II.size
Bio.Restriction.Restriction.PflFI.size
Bio.Restriction.Restriction.PflMI.size
Bio.Restriction.Restriction.PfoI.size
Bio.Restriction.Restriction.PhoI.size
Bio.Restriction.Restriction.PinAI.size
Bio.Restriction.Restriction.PlaDI.size
Bio.Restriction.Restriction.Ple19I.size
Bio.Restriction.Restriction.PleI.size
Bio.Restriction.Restriction.PmaCI.size
Bio.Restriction.Restriction.PmeI.size
Bio.Restriction.Restriction.PmlI.size
Bio.Restriction.Restriction.PpiI.size
Bio.Restriction.Restriction.PpsI.size
Bio.Restriction.Restriction.Ppu10I.size
Bio.Restriction.Restriction.Ppu21I.size
Bio.Restriction.Restriction.PpuMI.size
Bio.Restriction.Restriction.PscI.size
Bio.Restriction.Restriction.PshAI.size
Bio.Restriction.Restriction.PshBI.size
Bio.Restriction.Restriction.PsiI.size
Bio.Restriction.Restriction.Psp03I.size
Bio.Restriction.Restriction.Psp124BI.size
Bio.Restriction.Restriction.Psp1406I.size
Bio.Restriction.Restriction.Psp5II.size
Bio.Restriction.Restriction.Psp6I.size
Bio.Restriction.Restriction.PspCI.size
Bio.Restriction.Restriction.PspEI.size
Bio.Restriction.Restriction.PspGI.size
Bio.Restriction.Restriction.PspLI.size
Bio.Restriction.Restriction.PspN4I.size
Bio.Restriction.Restriction.PspOMI.size
Bio.Restriction.Restriction.PspOMII.size
Bio.Restriction.Restriction.PspPI.size
Bio.Restriction.Restriction.PspPPI.size
Bio.Restriction.Restriction.PspPRI.size
Bio.Restriction.Restriction.PspXI.size
Bio.Restriction.Restriction.PsrI.size
Bio.Restriction.Restriction.PssI.size
Bio.Restriction.Restriction.PstI.size
Bio.Restriction.Restriction.PsuI.size
Bio.Restriction.Restriction.PsyI.size
Bio.Restriction.Restriction.PteI.size
Bio.Restriction.Restriction.PvuI.size
Bio.Restriction.Restriction.PvuII.size
Bio.Restriction.Restriction.RcaI.size
Bio.Restriction.Restriction.RceI.size
Bio.Restriction.Restriction.RgaI.size
Bio.Restriction.Restriction.RigI.size
Bio.Restriction.Restriction.RleAI.size
Bio.Restriction.Restriction.RpaB5I.size
Bio.Restriction.Restriction.RruI.size
Bio.Restriction.Restriction.RsaI.size
Bio.Restriction.Restriction.RsaNI.size
Bio.Restriction.Restriction.RseI.size
Bio.Restriction.Restriction.Rsr2I.size
Bio.Restriction.Restriction.RsrII.size
Bio.Restriction.Restriction.SacI.size
Bio.Restriction.Restriction.SacII.size
Bio.Restriction.Restriction.SalI.size
Bio.Restriction.Restriction.SanDI.size
Bio.Restriction.Restriction.SapI.size
Bio.Restriction.Restriction.SaqAI.size
Bio.Restriction.Restriction.SatI.size
Bio.Restriction.Restriction.Sau3AI.size
Bio.Restriction.Restriction.Sau96I.size
Bio.Restriction.Restriction.SauI.size
Bio.Restriction.Restriction.SbfI.size
Bio.Restriction.Restriction.ScaI.size
Bio.Restriction.Restriction.SchI.size
Bio.Restriction.Restriction.SciI.size
Bio.Restriction.Restriction.ScrFI.size
Bio.Restriction.Restriction.SdaI.size
Bio.Restriction.Restriction.SdeAI.size
Bio.Restriction.Restriction.SdeOSI.size
Bio.Restriction.Restriction.SduI.size
Bio.Restriction.Restriction.SecI.size
Bio.Restriction.Restriction.SelI.size
Bio.Restriction.Restriction.SetI.size
Bio.Restriction.Restriction.SexAI.size
Bio.Restriction.Restriction.SfaAI.size
Bio.Restriction.Restriction.SfaNI.size
Bio.Restriction.Restriction.SfcI.size
Bio.Restriction.Restriction.SfeI.size
Bio.Restriction.Restriction.SfiI.size
Bio.Restriction.Restriction.SfoI.size
Bio.Restriction.Restriction.Sfr274I.size
Bio.Restriction.Restriction.Sfr303I.size
Bio.Restriction.Restriction.SfuI.size
Bio.Restriction.Restriction.SgfI.size
Bio.Restriction.Restriction.SgrAI.size
Bio.Restriction.Restriction.SgrBI.size
Bio.Restriction.Restriction.SgrDI.size
Bio.Restriction.Restriction.SgsI.size
Bio.Restriction.Restriction.SimI.size
Bio.Restriction.Restriction.SinI.size
Bio.Restriction.Restriction.SlaI.size
Bio.Restriction.Restriction.SmaI.size
Bio.Restriction.Restriction.SmiI.size
Bio.Restriction.Restriction.SmiMI.size
Bio.Restriction.Restriction.SmlI.size
Bio.Restriction.Restriction.SmoI.size
Bio.Restriction.Restriction.SmuI.size
Bio.Restriction.Restriction.SnaBI.size
Bio.Restriction.Restriction.SnaI.size
Bio.Restriction.Restriction.SpeI.size
Bio.Restriction.Restriction.SphI.size
Bio.Restriction.Restriction.SplI.size
Bio.Restriction.Restriction.SpoDI.size
Bio.Restriction.Restriction.SrfI.size
Bio.Restriction.Restriction.Sse232I.size
Bio.Restriction.Restriction.Sse8387I.size
Bio.Restriction.Restriction.Sse8647I.size
Bio.Restriction.Restriction.Sse9I.size
Bio.Restriction.Restriction.SseBI.size
Bio.Restriction.Restriction.SsiI.size
Bio.Restriction.Restriction.SspD5I.size
Bio.Restriction.Restriction.SspDI.size
Bio.Restriction.Restriction.SspI.size
Bio.Restriction.Restriction.SstI.size
Bio.Restriction.Restriction.SstII.size
Bio.Restriction.Restriction.Sth132I.size
Bio.Restriction.Restriction.Sth302II.size
Bio.Restriction.Restriction.StrI.size
Bio.Restriction.Restriction.StsI.size
Bio.Restriction.Restriction.StuI.size
Bio.Restriction.Restriction.StyD4I.size
Bio.Restriction.Restriction.StyI.size
Bio.Restriction.Restriction.SwaI.size
Bio.Restriction.Restriction.TaaI.size
Bio.Restriction.Restriction.TaiI.size
Bio.Restriction.Restriction.TaqI.size
Bio.Restriction.Restriction.TaqII.size
Bio.Restriction.Restriction.TatI.size
Bio.Restriction.Restriction.TauI.size
Bio.Restriction.Restriction.TfiI.size
Bio.Restriction.Restriction.TliI.size
Bio.Restriction.Restriction.Tru1I.size
Bio.Restriction.Restriction.Tru9I.size
Bio.Restriction.Restriction.TscAI.size
Bio.Restriction.Restriction.TseI.size
Bio.Restriction.Restriction.TsoI.size
Bio.Restriction.Restriction.Tsp45I.size
Bio.Restriction.Restriction.Tsp4CI.size
Bio.Restriction.Restriction.Tsp509I.size
Bio.Restriction.Restriction.TspDTI.size
Bio.Restriction.Restriction.TspEI.size
Bio.Restriction.Restriction.TspGWI.size
Bio.Restriction.Restriction.TspMI.size
Bio.Restriction.Restriction.TspRI.size
Bio.Restriction.Restriction.TssI.size
Bio.Restriction.Restriction.TstI.size
Bio.Restriction.Restriction.TsuI.size
Bio.Restriction.Restriction.Tth111I.size
Bio.Restriction.Restriction.Tth111II.size
Bio.Restriction.Restriction.UbaF11I.size
Bio.Restriction.Restriction.UbaF12I.size
Bio.Restriction.Restriction.UbaF13I.size
Bio.Restriction.Restriction.UbaF14I.size
Bio.Restriction.Restriction.UbaF9I.size
Bio.Restriction.Restriction.UbaPI.size
Bio.Restriction.Restriction.UnbI.size
Bio.Restriction.Restriction.Van91I.size
Bio.Restriction.Restriction.Vha464I.size
Bio.Restriction.Restriction.VneI.size
Bio.Restriction.Restriction.VpaK11AI.size
Bio.Restriction.Restriction.VpaK11BI.size
Bio.Restriction.Restriction.VspI.size
Bio.Restriction.Restriction.XagI.size
Bio.Restriction.Restriction.XapI.size
Bio.Restriction.Restriction.XbaI.size
Bio.Restriction.Restriction.XceI.size
Bio.Restriction.Restriction.XcmI.size
Bio.Restriction.Restriction.XhoI.size
Bio.Restriction.Restriction.XhoII.size
Bio.Restriction.Restriction.XmaCI.size
Bio.Restriction.Restriction.XmaI.size
Bio.Restriction.Restriction.XmaIII.size
Bio.Restriction.Restriction.XmaJI.size
Bio.Restriction.Restriction.XmiI.size
Bio.Restriction.Restriction.XmnI.size
Bio.Restriction.Restriction.XspI.size
Bio.Restriction.Restriction.ZraI.size
Bio.Restriction.Restriction.ZrmI.size
Bio.Restriction.Restriction.Zsp2I.size" class="py-name" href="#" onclick="return doclink('link-20', 'size', 'link-20');">size</a></tt><tt class="py-op">,</tt> <tt id="link-21" class="py-name" targets="Method Bio.Blast.NCBIStandalone._AlignmentConsumer.length()=Bio.Blast.NCBIStandalone._AlignmentConsumer-class.html#length"><a title="Bio.Blast.NCBIStandalone._AlignmentConsumer.length" class="py-name" href="#" onclick="return doclink('link-21', 'length', 'link-21');">length</a></tt><tt class="py-op">)</tt> </tt>
<a name="L65"></a><tt class="py-lineno"> 65</tt>  <tt class="py-line">    <tt class="py-name">fp</tt><tt class="py-op">=</tt><tt class="py-name">open</tt><tt class="py-op">(</tt><tt class="py-name">filename</tt><tt class="py-op">,</tt> <tt class="py-string">"r"</tt><tt class="py-op">)</tt> </tt>
<a name="L66"></a><tt class="py-lineno"> 66</tt>  <tt class="py-line">    <tt class="py-name">flist</tt><tt class="py-op">=</tt><tt class="py-op">[</tt><tt class="py-op">]</tt> </tt>
<a name="L67"></a><tt class="py-lineno"> 67</tt>  <tt class="py-line">    <tt class="py-comment"># ID of fragment=rank in spec file</tt> </tt>
<a name="L68"></a><tt class="py-lineno"> 68</tt>  <tt class="py-line">    <tt class="py-name">fid</tt><tt class="py-op">=</tt><tt class="py-number">0</tt> </tt>
<a name="L69"></a><tt class="py-lineno"> 69</tt>  <tt class="py-line">    <tt class="py-keyword">for</tt> <tt class="py-name">l</tt> <tt class="py-keyword">in</tt> <tt class="py-name">fp</tt><tt class="py-op">.</tt><tt id="link-22" class="py-name" targets="Method Bio.File.UndoHandle.readlines()=Bio.File.UndoHandle-class.html#readlines"><a title="Bio.File.UndoHandle.readlines" class="py-name" href="#" onclick="return doclink('link-22', 'readlines', 'link-22');">readlines</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L70"></a><tt class="py-lineno"> 70</tt>  <tt class="py-line">                <tt class="py-comment"># skip comment and blank lines</tt> </tt>
<a name="L71"></a><tt class="py-lineno"> 71</tt>  <tt class="py-line">        <tt class="py-keyword">if</tt> <tt class="py-name">l</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt><tt class="py-op">==</tt><tt class="py-string">"*"</tt> <tt class="py-keyword">or</tt> <tt class="py-name">l</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt><tt class="py-op">==</tt><tt class="py-string">"\n"</tt><tt class="py-op">:</tt> </tt>
<a name="L72"></a><tt class="py-lineno"> 72</tt>  <tt class="py-line">            <tt class="py-keyword">continue</tt> </tt>
<a name="L73"></a><tt class="py-lineno"> 73</tt>  <tt class="py-line">        <tt class="py-name">sl</tt><tt class="py-op">=</tt><tt class="py-name">l</tt><tt class="py-op">.</tt><tt id="link-23" class="py-name" targets="Method Bio.Nexus.Trees.Tree.split()=Bio.Nexus.Trees.Tree-class.html#split,Method Bio.Phylo.BaseTree.TreeMixin.split()=Bio.Phylo.BaseTree.TreeMixin-class.html#split,Method Bio.Restriction.Restriction.RestrictionBatch.split()=Bio.Restriction.Restriction.RestrictionBatch-class.html#split,Method Bio.Seq.Seq.split()=Bio.Seq.Seq-class.html#split"><a title="Bio.Nexus.Trees.Tree.split
Bio.Phylo.BaseTree.TreeMixin.split
Bio.Restriction.Restriction.RestrictionBatch.split
Bio.Seq.Seq.split" class="py-name" href="#" onclick="return doclink('link-23', 'split', 'link-23');">split</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L74"></a><tt class="py-lineno"> 74</tt>  <tt class="py-line">        <tt class="py-keyword">if</tt> <tt class="py-name">sl</tt><tt class="py-op">[</tt><tt class="py-number">1</tt><tt class="py-op">]</tt><tt class="py-op">==</tt><tt class="py-string">"------"</tt><tt class="py-op">:</tt> </tt>
<a name="L75"></a><tt class="py-lineno"> 75</tt>  <tt class="py-line">            <tt class="py-comment"># Start of fragment definition</tt> </tt>
<a name="L76"></a><tt class="py-lineno"> 76</tt>  <tt class="py-line">            <tt class="py-name">f</tt><tt class="py-op">=</tt><tt id="link-24" class="py-name" targets="Class Bio.PDB.FragmentMapper'.Fragment=Bio.PDB.FragmentMapper%27.Fragment-class.html"><a title="Bio.PDB.FragmentMapper'.Fragment" class="py-name" href="#" onclick="return doclink('link-24', 'Fragment', 'link-24');">Fragment</a></tt><tt class="py-op">(</tt><tt id="link-25" class="py-name"><a title="Bio.Blast.NCBIStandalone._AlignmentConsumer.length" class="py-name" href="#" onclick="return doclink('link-25', 'length', 'link-21');">length</a></tt><tt class="py-op">,</tt> <tt class="py-name">fid</tt><tt class="py-op">)</tt> </tt>
<a name="L77"></a><tt class="py-lineno"> 77</tt>  <tt class="py-line">            <tt class="py-name">flist</tt><tt class="py-op">.</tt><tt id="link-26" class="py-name" targets="Method Bio.Align.MultipleSeqAlignment.append()=Bio.Align.MultipleSeqAlignment-class.html#append,Method Bio.Crystal.Chain.append()=Bio.Crystal.Chain-class.html#append,Method Bio.SCOP.Raf.SeqMap.append()=Bio.SCOP.Raf.SeqMap-class.html#append,Method Bio.Seq.MutableSeq.append()=Bio.Seq.MutableSeq-class.html#append,Method Bio.Wise.psw.Alignment.append()=Bio.Wise.psw.Alignment-class.html#append,Method Bio.Wise.psw.AlignmentColumn.append()=Bio.Wise.psw.AlignmentColumn-class.html#append"><a title="Bio.Align.MultipleSeqAlignment.append
Bio.Crystal.Chain.append
Bio.SCOP.Raf.SeqMap.append
Bio.Seq.MutableSeq.append
Bio.Wise.psw.Alignment.append
Bio.Wise.psw.AlignmentColumn.append" class="py-name" href="#" onclick="return doclink('link-26', 'append', 'link-26');">append</a></tt><tt class="py-op">(</tt><tt class="py-name">f</tt><tt class="py-op">)</tt> </tt>
<a name="L78"></a><tt class="py-lineno"> 78</tt>  <tt class="py-line">            <tt class="py-comment"># increase fragment id (rank)</tt> </tt>
<a name="L79"></a><tt class="py-lineno"> 79</tt>  <tt class="py-line">            <tt class="py-name">fid</tt><tt class="py-op">+=</tt><tt class="py-number">1</tt> </tt>
<a name="L80"></a><tt class="py-lineno"> 80</tt>  <tt class="py-line">            <tt class="py-keyword">continue</tt> </tt>
<a name="L81"></a><tt class="py-lineno"> 81</tt>  <tt class="py-line">        <tt class="py-comment"># Add CA coord to Fragment</tt> </tt>
<a name="L82"></a><tt class="py-lineno"> 82</tt>  <tt class="py-line">        <tt class="py-name">coord</tt><tt class="py-op">=</tt><tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">array</tt><tt class="py-op">(</tt><tt class="py-name">map</tt><tt class="py-op">(</tt><tt class="py-name">float</tt><tt class="py-op">,</tt> <tt class="py-name">sl</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">:</tt><tt class="py-number">3</tt><tt class="py-op">]</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L83"></a><tt class="py-lineno"> 83</tt>  <tt class="py-line">        <tt class="py-comment"># XXX= dummy residue name</tt> </tt>
<a name="L84"></a><tt class="py-lineno"> 84</tt>  <tt class="py-line">        <tt class="py-name">f</tt><tt class="py-op">.</tt><tt id="link-27" class="py-name" targets="Method Bio.PDB.FragmentMapper'.Fragment.add_residue()=Bio.PDB.FragmentMapper%27.Fragment-class.html#add_residue"><a title="Bio.PDB.FragmentMapper'.Fragment.add_residue" class="py-name" href="#" onclick="return doclink('link-27', 'add_residue', 'link-27');">add_residue</a></tt><tt class="py-op">(</tt><tt class="py-string">"XXX"</tt><tt class="py-op">,</tt> <tt class="py-name">coord</tt><tt class="py-op">)</tt> </tt>
<a name="L85"></a><tt class="py-lineno"> 85</tt>  <tt class="py-line">    <tt class="py-name">fp</tt><tt class="py-op">.</tt><tt id="link-28" class="py-name" targets="Method Bio.SeqIO.SffIO._AddTellHandle.close()=Bio.SeqIO.SffIO._AddTellHandle-class.html#close,Method Bio.SeqIO._index._SQLiteManySeqFilesDict.close()=Bio.SeqIO._index._SQLiteManySeqFilesDict-class.html#close,Method BioSQL.BioSeqDatabase.Adaptor.close()=BioSQL.BioSeqDatabase.Adaptor-class.html#close,Method BioSQL.BioSeqDatabase.DBServer.close()=BioSQL.BioSeqDatabase.DBServer-class.html#close"><a title="Bio.SeqIO.SffIO._AddTellHandle.close
Bio.SeqIO._index._SQLiteManySeqFilesDict.close
BioSQL.BioSeqDatabase.Adaptor.close
BioSQL.BioSeqDatabase.DBServer.close" class="py-name" href="#" onclick="return doclink('link-28', 'close', 'link-28');">close</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L86"></a><tt class="py-lineno"> 86</tt>  <tt class="py-line">    <tt class="py-keyword">return</tt> <tt class="py-name">flist</tt> </tt>
</div><a name="L87"></a><tt class="py-lineno"> 87</tt>  <tt class="py-line"> </tt>
<a name="L88"></a><tt class="py-lineno"> 88</tt>  <tt class="py-line"> </tt>
<a name="Fragment"></a><div id="Fragment-def"><a name="L89"></a><tt class="py-lineno"> 89</tt> <a class="py-toggle" href="#" id="Fragment-toggle" onclick="return toggle('Fragment');">-</a><tt class="py-line"><tt class="py-keyword">class</tt> <a class="py-def-name" href="Bio.PDB.FragmentMapper'.Fragment-class.html">Fragment</a><tt class="py-op">(</tt><tt class="py-base-class">object</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="Fragment-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="Fragment-expanded"><a name="L90"></a><tt class="py-lineno"> 90</tt>  <tt class="py-line">    <tt class="py-docstring">"""</tt> </tt>
<a name="L91"></a><tt class="py-lineno"> 91</tt>  <tt class="py-line"><tt class="py-docstring">    Represent a polypeptide C-alpha fragment.</tt> </tt>
<a name="L92"></a><tt class="py-lineno"> 92</tt>  <tt class="py-line"><tt class="py-docstring">    """</tt> </tt>
<a name="Fragment.__init__"></a><div id="Fragment.__init__-def"><a name="L93"></a><tt class="py-lineno"> 93</tt> <a class="py-toggle" href="#" id="Fragment.__init__-toggle" onclick="return toggle('Fragment.__init__');">-</a><tt class="py-line">    <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.PDB.FragmentMapper'.Fragment-class.html#__init__">__init__</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">length</tt><tt class="py-op">,</tt> <tt class="py-param">fid</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="Fragment.__init__-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="Fragment.__init__-expanded"><a name="L94"></a><tt class="py-lineno"> 94</tt>  <tt class="py-line">        <tt class="py-docstring">"""</tt> </tt>
<a name="L95"></a><tt class="py-lineno"> 95</tt>  <tt class="py-line"><tt class="py-docstring">        @param length: length of the fragment</tt> </tt>
<a name="L96"></a><tt class="py-lineno"> 96</tt>  <tt class="py-line"><tt class="py-docstring">        @type length: int</tt> </tt>
<a name="L97"></a><tt class="py-lineno"> 97</tt>  <tt class="py-line"><tt class="py-docstring"></tt> </tt>
<a name="L98"></a><tt class="py-lineno"> 98</tt>  <tt class="py-line"><tt class="py-docstring">        @param fid: id for the fragment</tt> </tt>
<a name="L99"></a><tt class="py-lineno"> 99</tt>  <tt class="py-line"><tt class="py-docstring">        @type fid: int</tt> </tt>
<a name="L100"></a><tt class="py-lineno">100</tt>  <tt class="py-line"><tt class="py-docstring">        """</tt> </tt>
<a name="L101"></a><tt class="py-lineno">101</tt>  <tt class="py-line">        <tt class="py-comment"># nr of residues in fragment</tt> </tt>
<a name="L102"></a><tt class="py-lineno">102</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-29" class="py-name"><a title="Bio.Blast.NCBIStandalone._AlignmentConsumer.length" class="py-name" href="#" onclick="return doclink('link-29', 'length', 'link-21');">length</a></tt><tt class="py-op">=</tt><tt id="link-30" class="py-name"><a title="Bio.Blast.NCBIStandalone._AlignmentConsumer.length" class="py-name" href="#" onclick="return doclink('link-30', 'length', 'link-21');">length</a></tt> </tt>
<a name="L103"></a><tt class="py-lineno">103</tt>  <tt class="py-line">        <tt class="py-comment"># nr of residues added</tt> </tt>
<a name="L104"></a><tt class="py-lineno">104</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">counter</tt><tt class="py-op">=</tt><tt class="py-number">0</tt> </tt>
<a name="L105"></a><tt class="py-lineno">105</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">resname_list</tt><tt class="py-op">=</tt><tt class="py-op">[</tt><tt class="py-op">]</tt> </tt>
<a name="L106"></a><tt class="py-lineno">106</tt>  <tt class="py-line">        <tt class="py-comment"># CA coordinate matrix</tt> </tt>
<a name="L107"></a><tt class="py-lineno">107</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">coords_ca</tt><tt class="py-op">=</tt><tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">zeros</tt><tt class="py-op">(</tt><tt class="py-op">(</tt><tt id="link-31" class="py-name"><a title="Bio.Blast.NCBIStandalone._AlignmentConsumer.length" class="py-name" href="#" onclick="return doclink('link-31', 'length', 'link-21');">length</a></tt><tt class="py-op">,</tt> <tt class="py-number">3</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-string">"d"</tt><tt class="py-op">)</tt> </tt>
<a name="L108"></a><tt class="py-lineno">108</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">fid</tt><tt class="py-op">=</tt><tt class="py-name">fid</tt> </tt>
</div><a name="L109"></a><tt class="py-lineno">109</tt>  <tt class="py-line"> </tt>
<a name="Fragment.get_resname_list"></a><div id="Fragment.get_resname_list-def"><a name="L110"></a><tt class="py-lineno">110</tt> <a class="py-toggle" href="#" id="Fragment.get_resname_list-toggle" onclick="return toggle('Fragment.get_resname_list');">-</a><tt class="py-line">    <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.PDB.FragmentMapper'.Fragment-class.html#get_resname_list">get_resname_list</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="Fragment.get_resname_list-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="Fragment.get_resname_list-expanded"><a name="L111"></a><tt class="py-lineno">111</tt>  <tt class="py-line">        <tt class="py-docstring">"""</tt> </tt>
<a name="L112"></a><tt class="py-lineno">112</tt>  <tt class="py-line"><tt class="py-docstring">        @return: the residue names</tt> </tt>
<a name="L113"></a><tt class="py-lineno">113</tt>  <tt class="py-line"><tt class="py-docstring">        @rtype: [string, string,...]</tt> </tt>
<a name="L114"></a><tt class="py-lineno">114</tt>  <tt class="py-line"><tt class="py-docstring">        """</tt> </tt>
<a name="L115"></a><tt class="py-lineno">115</tt>  <tt class="py-line">        <tt class="py-keyword">return</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">resname_list</tt> </tt>
</div><a name="L116"></a><tt class="py-lineno">116</tt>  <tt class="py-line"> </tt>
<a name="Fragment.get_id"></a><div id="Fragment.get_id-def"><a name="L117"></a><tt class="py-lineno">117</tt> <a class="py-toggle" href="#" id="Fragment.get_id-toggle" onclick="return toggle('Fragment.get_id');">-</a><tt class="py-line">    <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.PDB.FragmentMapper'.Fragment-class.html#get_id">get_id</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="Fragment.get_id-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="Fragment.get_id-expanded"><a name="L118"></a><tt class="py-lineno">118</tt>  <tt class="py-line">        <tt class="py-docstring">"""</tt> </tt>
<a name="L119"></a><tt class="py-lineno">119</tt>  <tt class="py-line"><tt class="py-docstring">        @return: id for the fragment</tt> </tt>
<a name="L120"></a><tt class="py-lineno">120</tt>  <tt class="py-line"><tt class="py-docstring">        @rtype: int</tt> </tt>
<a name="L121"></a><tt class="py-lineno">121</tt>  <tt class="py-line"><tt class="py-docstring">        """</tt> </tt>
<a name="L122"></a><tt class="py-lineno">122</tt>  <tt class="py-line">        <tt class="py-keyword">return</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">fid</tt> </tt>
</div><a name="L123"></a><tt class="py-lineno">123</tt>  <tt class="py-line"> </tt>
<a name="Fragment.get_coords"></a><div id="Fragment.get_coords-def"><a name="L124"></a><tt class="py-lineno">124</tt> <a class="py-toggle" href="#" id="Fragment.get_coords-toggle" onclick="return toggle('Fragment.get_coords');">-</a><tt class="py-line">    <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.PDB.FragmentMapper'.Fragment-class.html#get_coords">get_coords</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="Fragment.get_coords-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="Fragment.get_coords-expanded"><a name="L125"></a><tt class="py-lineno">125</tt>  <tt class="py-line">        <tt class="py-docstring">"""</tt> </tt>
<a name="L126"></a><tt class="py-lineno">126</tt>  <tt class="py-line"><tt class="py-docstring">        @return: the CA coords in the fragment</tt> </tt>
<a name="L127"></a><tt class="py-lineno">127</tt>  <tt class="py-line"><tt class="py-docstring">        @rtype: Numeric (Nx3) array</tt> </tt>
<a name="L128"></a><tt class="py-lineno">128</tt>  <tt class="py-line"><tt class="py-docstring">        """</tt> </tt>
<a name="L129"></a><tt class="py-lineno">129</tt>  <tt class="py-line">        <tt class="py-keyword">return</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">coords_ca</tt> </tt>
</div><a name="L130"></a><tt class="py-lineno">130</tt>  <tt class="py-line"> </tt>
<a name="Fragment.add_residue"></a><div id="Fragment.add_residue-def"><a name="L131"></a><tt class="py-lineno">131</tt> <a class="py-toggle" href="#" id="Fragment.add_residue-toggle" onclick="return toggle('Fragment.add_residue');">-</a><tt class="py-line">    <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.PDB.FragmentMapper'.Fragment-class.html#add_residue">add_residue</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">resname</tt><tt class="py-op">,</tt> <tt class="py-param">ca_coord</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="Fragment.add_residue-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="Fragment.add_residue-expanded"><a name="L132"></a><tt class="py-lineno">132</tt>  <tt class="py-line">        <tt class="py-docstring">"""</tt> </tt>
<a name="L133"></a><tt class="py-lineno">133</tt>  <tt class="py-line"><tt class="py-docstring">        @param resname: residue name (eg. GLY).</tt> </tt>
<a name="L134"></a><tt class="py-lineno">134</tt>  <tt class="py-line"><tt class="py-docstring">        @type resname: string</tt> </tt>
<a name="L135"></a><tt class="py-lineno">135</tt>  <tt class="py-line"><tt class="py-docstring"></tt> </tt>
<a name="L136"></a><tt class="py-lineno">136</tt>  <tt class="py-line"><tt class="py-docstring">        @param ca_coord: the c-alpha coorinates of the residues</tt> </tt>
<a name="L137"></a><tt class="py-lineno">137</tt>  <tt class="py-line"><tt class="py-docstring">        @type ca_coord: Numeric array with length 3</tt> </tt>
<a name="L138"></a><tt class="py-lineno">138</tt>  <tt class="py-line"><tt class="py-docstring">        """</tt> </tt>
<a name="L139"></a><tt class="py-lineno">139</tt>  <tt class="py-line">        <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">counter</tt><tt class="py-op">&gt;=</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-32" class="py-name"><a title="Bio.Blast.NCBIStandalone._AlignmentConsumer.length" class="py-name" href="#" onclick="return doclink('link-32', 'length', 'link-21');">length</a></tt><tt class="py-op">:</tt> </tt>
<a name="L140"></a><tt class="py-lineno">140</tt>  <tt class="py-line">            <tt class="py-keyword">raise</tt> <tt id="link-33" class="py-name"><a title="Bio.PDB.PDBExceptions.PDBException" class="py-name" href="#" onclick="return doclink('link-33', 'PDBException', 'link-9');">PDBException</a></tt><tt class="py-op">(</tt><tt class="py-string">"Fragment boundary exceeded."</tt><tt class="py-op">)</tt> </tt>
<a name="L141"></a><tt class="py-lineno">141</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">resname_list</tt><tt class="py-op">.</tt><tt id="link-34" class="py-name"><a title="Bio.Align.MultipleSeqAlignment.append
Bio.Crystal.Chain.append
Bio.SCOP.Raf.SeqMap.append
Bio.Seq.MutableSeq.append
Bio.Wise.psw.Alignment.append
Bio.Wise.psw.AlignmentColumn.append" class="py-name" href="#" onclick="return doclink('link-34', 'append', 'link-26');">append</a></tt><tt class="py-op">(</tt><tt class="py-name">resname</tt><tt class="py-op">)</tt> </tt>
<a name="L142"></a><tt class="py-lineno">142</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">coords_ca</tt><tt class="py-op">[</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">counter</tt><tt class="py-op">]</tt><tt class="py-op">=</tt><tt class="py-name">ca_coord</tt> </tt>
<a name="L143"></a><tt class="py-lineno">143</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">counter</tt><tt class="py-op">=</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">counter</tt><tt class="py-op">+</tt><tt class="py-number">1</tt> </tt>
</div><a name="L144"></a><tt class="py-lineno">144</tt>  <tt class="py-line"> </tt>
<a name="Fragment.__len__"></a><div id="Fragment.__len__-def"><a name="L145"></a><tt class="py-lineno">145</tt> <a class="py-toggle" href="#" id="Fragment.__len__-toggle" onclick="return toggle('Fragment.__len__');">-</a><tt class="py-line">    <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.PDB.FragmentMapper'.Fragment-class.html#__len__">__len__</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="Fragment.__len__-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="Fragment.__len__-expanded"><a name="L146"></a><tt class="py-lineno">146</tt>  <tt class="py-line">        <tt class="py-docstring">"""</tt> </tt>
<a name="L147"></a><tt class="py-lineno">147</tt>  <tt class="py-line"><tt class="py-docstring">        @return: length of fragment</tt> </tt>
<a name="L148"></a><tt class="py-lineno">148</tt>  <tt class="py-line"><tt class="py-docstring">        @rtype: int</tt> </tt>
<a name="L149"></a><tt class="py-lineno">149</tt>  <tt class="py-line"><tt class="py-docstring">        """</tt> </tt>
<a name="L150"></a><tt class="py-lineno">150</tt>  <tt class="py-line">        <tt class="py-keyword">return</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-35" class="py-name"><a title="Bio.Blast.NCBIStandalone._AlignmentConsumer.length" class="py-name" href="#" onclick="return doclink('link-35', 'length', 'link-21');">length</a></tt> </tt>
</div><a name="L151"></a><tt class="py-lineno">151</tt>  <tt class="py-line"> </tt>
<a name="Fragment.__sub__"></a><div id="Fragment.__sub__-def"><a name="L152"></a><tt class="py-lineno">152</tt> <a class="py-toggle" href="#" id="Fragment.__sub__-toggle" onclick="return toggle('Fragment.__sub__');">-</a><tt class="py-line">    <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.PDB.FragmentMapper'.Fragment-class.html#__sub__">__sub__</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">other</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="Fragment.__sub__-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="Fragment.__sub__-expanded"><a name="L153"></a><tt class="py-lineno">153</tt>  <tt class="py-line">        <tt class="py-docstring">"""</tt> </tt>
<a name="L154"></a><tt class="py-lineno">154</tt>  <tt class="py-line"><tt class="py-docstring">        Return rmsd between two fragments.</tt> </tt>
<a name="L155"></a><tt class="py-lineno">155</tt>  <tt class="py-line"><tt class="py-docstring"></tt> </tt>
<a name="L156"></a><tt class="py-lineno">156</tt>  <tt class="py-line"><tt class="py-docstring">        Example:</tt> </tt>
<a name="L157"></a><tt class="py-lineno">157</tt>  <tt class="py-line"><tt class="py-docstring">            &gt;&gt;&gt; rmsd=fragment1-fragment2</tt> </tt>
<a name="L158"></a><tt class="py-lineno">158</tt>  <tt class="py-line"><tt class="py-docstring"></tt> </tt>
<a name="L159"></a><tt class="py-lineno">159</tt>  <tt class="py-line"><tt class="py-docstring">        @return: rmsd between fragments</tt> </tt>
<a name="L160"></a><tt class="py-lineno">160</tt>  <tt class="py-line"><tt class="py-docstring">        @rtype: float</tt> </tt>
<a name="L161"></a><tt class="py-lineno">161</tt>  <tt class="py-line"><tt class="py-docstring">        """</tt> </tt>
<a name="L162"></a><tt class="py-lineno">162</tt>  <tt class="py-line">        <tt class="py-name">sup</tt><tt class="py-op">=</tt><tt id="link-36" class="py-name"><a title="Bio.SVDSuperimposer
Bio.SVDSuperimposer.SVDSuperimposer'.SVDSuperimposer" class="py-name" href="#" onclick="return doclink('link-36', 'SVDSuperimposer', 'link-1');">SVDSuperimposer</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L163"></a><tt class="py-lineno">163</tt>  <tt class="py-line">        <tt class="py-name">sup</tt><tt class="py-op">.</tt><tt id="link-37" class="py-name" targets="Method Bio.Nexus.Nexus.StepMatrix.set()=Bio.Nexus.Nexus.StepMatrix-class.html#set,Method Bio.SVDSuperimposer.SVDSuperimposer'.SVDSuperimposer.set()=Bio.SVDSuperimposer.SVDSuperimposer%27.SVDSuperimposer-class.html#set"><a title="Bio.Nexus.Nexus.StepMatrix.set
Bio.SVDSuperimposer.SVDSuperimposer'.SVDSuperimposer.set" class="py-name" href="#" onclick="return doclink('link-37', 'set', 'link-37');">set</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">coords_ca</tt><tt class="py-op">,</tt> <tt id="link-38" class="py-name" targets="Method Bio.Phylo.PhyloXMLIO.Parser.other()=Bio.Phylo.PhyloXMLIO.Parser-class.html#other,Method Bio.Phylo.PhyloXMLIO.Writer.other()=Bio.Phylo.PhyloXMLIO.Writer-class.html#other"><a title="Bio.Phylo.PhyloXMLIO.Parser.other
Bio.Phylo.PhyloXMLIO.Writer.other" class="py-name" href="#" onclick="return doclink('link-38', 'other', 'link-38');">other</a></tt><tt class="py-op">.</tt><tt class="py-name">coords_ca</tt><tt class="py-op">)</tt> </tt>
<a name="L164"></a><tt class="py-lineno">164</tt>  <tt class="py-line">        <tt class="py-name">sup</tt><tt class="py-op">.</tt><tt id="link-39" class="py-name" targets="Method Bio.Phylo.PAML._paml.Paml.run()=Bio.Phylo.PAML._paml.Paml-class.html#run,Method Bio.Phylo.PAML.baseml.Baseml.run()=Bio.Phylo.PAML.baseml.Baseml-class.html#run,Method Bio.Phylo.PAML.codeml.Codeml.run()=Bio.Phylo.PAML.codeml.Codeml-class.html#run,Method Bio.Phylo.PAML.yn00.Yn00.run()=Bio.Phylo.PAML.yn00.Yn00-class.html#run,Method Bio.SVDSuperimposer.SVDSuperimposer'.SVDSuperimposer.run()=Bio.SVDSuperimposer.SVDSuperimposer%27.SVDSuperimposer-class.html#run"><a title="Bio.Phylo.PAML._paml.Paml.run
Bio.Phylo.PAML.baseml.Baseml.run
Bio.Phylo.PAML.codeml.Codeml.run
Bio.Phylo.PAML.yn00.Yn00.run
Bio.SVDSuperimposer.SVDSuperimposer'.SVDSuperimposer.run" class="py-name" href="#" onclick="return doclink('link-39', 'run', 'link-39');">run</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L165"></a><tt class="py-lineno">165</tt>  <tt class="py-line">        <tt class="py-keyword">return</tt> <tt class="py-name">sup</tt><tt class="py-op">.</tt><tt id="link-40" class="py-name" targets="Method Bio.SVDSuperimposer.SVDSuperimposer'.SVDSuperimposer.get_rms()=Bio.SVDSuperimposer.SVDSuperimposer%27.SVDSuperimposer-class.html#get_rms"><a title="Bio.SVDSuperimposer.SVDSuperimposer'.SVDSuperimposer.get_rms" class="py-name" href="#" onclick="return doclink('link-40', 'get_rms', 'link-40');">get_rms</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
</div><a name="L166"></a><tt class="py-lineno">166</tt>  <tt class="py-line"> </tt>
<a name="Fragment.__repr__"></a><div id="Fragment.__repr__-def"><a name="L167"></a><tt class="py-lineno">167</tt> <a class="py-toggle" href="#" id="Fragment.__repr__-toggle" onclick="return toggle('Fragment.__repr__');">-</a><tt class="py-line">    <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.PDB.FragmentMapper'.Fragment-class.html#__repr__">__repr__</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="Fragment.__repr__-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="Fragment.__repr__-expanded"><a name="L168"></a><tt class="py-lineno">168</tt>  <tt class="py-line">        <tt class="py-docstring">"""</tt> </tt>
<a name="L169"></a><tt class="py-lineno">169</tt>  <tt class="py-line"><tt class="py-docstring">        Returns &lt;Fragment length=L id=ID&gt; where L=length of fragment</tt> </tt>
<a name="L170"></a><tt class="py-lineno">170</tt>  <tt class="py-line"><tt class="py-docstring">        and ID the identifier (rank in the library).</tt> </tt>
<a name="L171"></a><tt class="py-lineno">171</tt>  <tt class="py-line"><tt class="py-docstring">        """</tt> </tt>
<a name="L172"></a><tt class="py-lineno">172</tt>  <tt class="py-line">        <tt class="py-keyword">return</tt> <tt class="py-string">"&lt;Fragment length=%i id=%i&gt;"</tt> <tt class="py-op">%</tt> <tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-41" class="py-name"><a title="Bio.Blast.NCBIStandalone._AlignmentConsumer.length" class="py-name" href="#" onclick="return doclink('link-41', 'length', 'link-21');">length</a></tt><tt class="py-op">,</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">fid</tt><tt class="py-op">)</tt> </tt>
</div></div><a name="L173"></a><tt class="py-lineno">173</tt>  <tt class="py-line"> </tt>
<a name="L174"></a><tt class="py-lineno">174</tt>  <tt class="py-line"> </tt>
<a name="_make_fragment_list"></a><div id="_make_fragment_list-def"><a name="L175"></a><tt class="py-lineno">175</tt> <a class="py-toggle" href="#" id="_make_fragment_list-toggle" onclick="return toggle('_make_fragment_list');">-</a><tt class="py-line"><tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.PDB.FragmentMapper'-module.html#_make_fragment_list">_make_fragment_list</a><tt class="py-op">(</tt><tt class="py-param">pp</tt><tt class="py-op">,</tt> <tt class="py-param">length</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="_make_fragment_list-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="_make_fragment_list-expanded"><a name="L176"></a><tt class="py-lineno">176</tt>  <tt class="py-line">    <tt class="py-docstring">"""</tt> </tt>
<a name="L177"></a><tt class="py-lineno">177</tt>  <tt class="py-line"><tt class="py-docstring">    Dice up a peptide in fragments of length "length".</tt> </tt>
<a name="L178"></a><tt class="py-lineno">178</tt>  <tt class="py-line"><tt class="py-docstring"></tt> </tt>
<a name="L179"></a><tt class="py-lineno">179</tt>  <tt class="py-line"><tt class="py-docstring">    @param pp: a list of residues (part of one peptide)</tt> </tt>
<a name="L180"></a><tt class="py-lineno">180</tt>  <tt class="py-line"><tt class="py-docstring">    @type pp: [L{Residue}, L{Residue}, ...]</tt> </tt>
<a name="L181"></a><tt class="py-lineno">181</tt>  <tt class="py-line"><tt class="py-docstring"></tt> </tt>
<a name="L182"></a><tt class="py-lineno">182</tt>  <tt class="py-line"><tt class="py-docstring">    @param length: fragment length</tt> </tt>
<a name="L183"></a><tt class="py-lineno">183</tt>  <tt class="py-line"><tt class="py-docstring">    @type length: int</tt> </tt>
<a name="L184"></a><tt class="py-lineno">184</tt>  <tt class="py-line"><tt class="py-docstring">    """</tt> </tt>
<a name="L185"></a><tt class="py-lineno">185</tt>  <tt class="py-line">    <tt class="py-name">frag_list</tt><tt class="py-op">=</tt><tt class="py-op">[</tt><tt class="py-op">]</tt> </tt>
<a name="L186"></a><tt class="py-lineno">186</tt>  <tt class="py-line">    <tt class="py-keyword">for</tt> <tt id="link-42" class="py-name" targets="Variable Bio.PDB.Polypeptide.i=Bio.PDB.Polypeptide-module.html#i"><a title="Bio.PDB.Polypeptide.i" class="py-name" href="#" onclick="return doclink('link-42', 'i', 'link-42');">i</a></tt> <tt class="py-keyword">in</tt> <tt id="link-43" class="py-name" targets="Method Bio.Graphics.GenomeDiagram._Diagram.Diagram.range()=Bio.Graphics.GenomeDiagram._Diagram.Diagram-class.html#range,Method Bio.Graphics.GenomeDiagram._FeatureSet.FeatureSet.range()=Bio.Graphics.GenomeDiagram._FeatureSet.FeatureSet-class.html#range,Method Bio.Graphics.GenomeDiagram._Graph.GraphData.range()=Bio.Graphics.GenomeDiagram._Graph.GraphData-class.html#range,Method Bio.Graphics.GenomeDiagram._GraphSet.GraphSet.range()=Bio.Graphics.GenomeDiagram._GraphSet.GraphSet-class.html#range,Method Bio.Graphics.GenomeDiagram._Track.Track.range()=Bio.Graphics.GenomeDiagram._Track.Track-class.html#range"><a title="Bio.Graphics.GenomeDiagram._Diagram.Diagram.range
Bio.Graphics.GenomeDiagram._FeatureSet.FeatureSet.range
Bio.Graphics.GenomeDiagram._Graph.GraphData.range
Bio.Graphics.GenomeDiagram._GraphSet.GraphSet.range
Bio.Graphics.GenomeDiagram._Track.Track.range" class="py-name" href="#" onclick="return doclink('link-43', 'range', 'link-43');">range</a></tt><tt class="py-op">(</tt><tt class="py-number">0</tt><tt class="py-op">,</tt> <tt class="py-name">len</tt><tt class="py-op">(</tt><tt class="py-name">pp</tt><tt class="py-op">)</tt><tt class="py-op">-</tt><tt id="link-44" class="py-name"><a title="Bio.Blast.NCBIStandalone._AlignmentConsumer.length" class="py-name" href="#" onclick="return doclink('link-44', 'length', 'link-21');">length</a></tt><tt class="py-op">+</tt><tt class="py-number">1</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L187"></a><tt class="py-lineno">187</tt>  <tt class="py-line">        <tt class="py-name">f</tt><tt class="py-op">=</tt><tt id="link-45" class="py-name"><a title="Bio.PDB.FragmentMapper'.Fragment" class="py-name" href="#" onclick="return doclink('link-45', 'Fragment', 'link-24');">Fragment</a></tt><tt class="py-op">(</tt><tt id="link-46" class="py-name"><a title="Bio.Blast.NCBIStandalone._AlignmentConsumer.length" class="py-name" href="#" onclick="return doclink('link-46', 'length', 'link-21');">length</a></tt><tt class="py-op">,</tt> <tt class="py-op">-</tt><tt class="py-number">1</tt><tt class="py-op">)</tt> </tt>
<a name="L188"></a><tt class="py-lineno">188</tt>  <tt class="py-line">        <tt class="py-keyword">for</tt> <tt class="py-name">j</tt> <tt class="py-keyword">in</tt> <tt id="link-47" class="py-name"><a title="Bio.Graphics.GenomeDiagram._Diagram.Diagram.range
Bio.Graphics.GenomeDiagram._FeatureSet.FeatureSet.range
Bio.Graphics.GenomeDiagram._Graph.GraphData.range
Bio.Graphics.GenomeDiagram._GraphSet.GraphSet.range
Bio.Graphics.GenomeDiagram._Track.Track.range" class="py-name" href="#" onclick="return doclink('link-47', 'range', 'link-43');">range</a></tt><tt class="py-op">(</tt><tt class="py-number">0</tt><tt class="py-op">,</tt> <tt id="link-48" class="py-name"><a title="Bio.Blast.NCBIStandalone._AlignmentConsumer.length" class="py-name" href="#" onclick="return doclink('link-48', 'length', 'link-21');">length</a></tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L189"></a><tt class="py-lineno">189</tt>  <tt class="py-line">            <tt class="py-name">residue</tt><tt class="py-op">=</tt><tt class="py-name">pp</tt><tt class="py-op">[</tt><tt id="link-49" class="py-name"><a title="Bio.PDB.Polypeptide.i" class="py-name" href="#" onclick="return doclink('link-49', 'i', 'link-42');">i</a></tt><tt class="py-op">+</tt><tt class="py-name">j</tt><tt class="py-op">]</tt> </tt>
<a name="L190"></a><tt class="py-lineno">190</tt>  <tt class="py-line">            <tt class="py-name">resname</tt><tt class="py-op">=</tt><tt class="py-name">residue</tt><tt class="py-op">.</tt><tt id="link-50" class="py-name" targets="Method Bio.PDB.Residue.Residue.get_resname()=Bio.PDB.Residue.Residue-class.html#get_resname"><a title="Bio.PDB.Residue.Residue.get_resname" class="py-name" href="#" onclick="return doclink('link-50', 'get_resname', 'link-50');">get_resname</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L191"></a><tt class="py-lineno">191</tt>  <tt class="py-line">            <tt class="py-keyword">if</tt> <tt class="py-name">residue</tt><tt class="py-op">.</tt><tt id="link-51" class="py-name" targets="Method Bio.PDB.Chain.Chain.has_id()=Bio.PDB.Chain.Chain-class.html#has_id,Method Bio.PDB.Entity.Entity.has_id()=Bio.PDB.Entity.Entity-class.html#has_id"><a title="Bio.PDB.Chain.Chain.has_id
Bio.PDB.Entity.Entity.has_id" class="py-name" href="#" onclick="return doclink('link-51', 'has_id', 'link-51');">has_id</a></tt><tt class="py-op">(</tt><tt class="py-string">"CA"</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L192"></a><tt class="py-lineno">192</tt>  <tt class="py-line">                <tt class="py-name">ca</tt><tt class="py-op">=</tt><tt class="py-name">residue</tt><tt class="py-op">[</tt><tt class="py-string">"CA"</tt><tt class="py-op">]</tt> </tt>
<a name="L193"></a><tt class="py-lineno">193</tt>  <tt class="py-line">            <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
<a name="L194"></a><tt class="py-lineno">194</tt>  <tt class="py-line">                <tt class="py-keyword">raise</tt> <tt id="link-52" class="py-name"><a title="Bio.PDB.PDBExceptions.PDBException" class="py-name" href="#" onclick="return doclink('link-52', 'PDBException', 'link-9');">PDBException</a></tt><tt class="py-op">(</tt><tt class="py-string">"CHAINBREAK"</tt><tt class="py-op">)</tt> </tt>
<a name="L195"></a><tt class="py-lineno">195</tt>  <tt class="py-line">            <tt class="py-keyword">if</tt> <tt class="py-name">ca</tt><tt class="py-op">.</tt><tt id="link-53" class="py-name" targets="Method Bio.PDB.Atom.Atom.is_disordered()=Bio.PDB.Atom.Atom-class.html#is_disordered,Method Bio.PDB.Entity.DisorderedEntityWrapper.is_disordered()=Bio.PDB.Entity.DisorderedEntityWrapper-class.html#is_disordered,Method Bio.PDB.Residue.Residue.is_disordered()=Bio.PDB.Residue.Residue-class.html#is_disordered"><a title="Bio.PDB.Atom.Atom.is_disordered
Bio.PDB.Entity.DisorderedEntityWrapper.is_disordered
Bio.PDB.Residue.Residue.is_disordered" class="py-name" href="#" onclick="return doclink('link-53', 'is_disordered', 'link-53');">is_disordered</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L196"></a><tt class="py-lineno">196</tt>  <tt class="py-line">                <tt class="py-keyword">raise</tt> <tt id="link-54" class="py-name"><a title="Bio.PDB.PDBExceptions.PDBException" class="py-name" href="#" onclick="return doclink('link-54', 'PDBException', 'link-9');">PDBException</a></tt><tt class="py-op">(</tt><tt class="py-string">"CHAINBREAK"</tt><tt class="py-op">)</tt> </tt>
<a name="L197"></a><tt class="py-lineno">197</tt>  <tt class="py-line">            <tt class="py-name">ca_coord</tt><tt class="py-op">=</tt><tt class="py-name">ca</tt><tt class="py-op">.</tt><tt id="link-55" class="py-name" targets="Method Bio.PDB.Atom.Atom.get_coord()=Bio.PDB.Atom.Atom-class.html#get_coord"><a title="Bio.PDB.Atom.Atom.get_coord" class="py-name" href="#" onclick="return doclink('link-55', 'get_coord', 'link-55');">get_coord</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L198"></a><tt class="py-lineno">198</tt>  <tt class="py-line">            <tt class="py-name">f</tt><tt class="py-op">.</tt><tt id="link-56" class="py-name"><a title="Bio.PDB.FragmentMapper'.Fragment.add_residue" class="py-name" href="#" onclick="return doclink('link-56', 'add_residue', 'link-27');">add_residue</a></tt><tt class="py-op">(</tt><tt class="py-name">resname</tt><tt class="py-op">,</tt> <tt class="py-name">ca_coord</tt><tt class="py-op">)</tt> </tt>
<a name="L199"></a><tt class="py-lineno">199</tt>  <tt class="py-line">        <tt class="py-name">frag_list</tt><tt class="py-op">.</tt><tt id="link-57" class="py-name"><a title="Bio.Align.MultipleSeqAlignment.append
Bio.Crystal.Chain.append
Bio.SCOP.Raf.SeqMap.append
Bio.Seq.MutableSeq.append
Bio.Wise.psw.Alignment.append
Bio.Wise.psw.AlignmentColumn.append" class="py-name" href="#" onclick="return doclink('link-57', 'append', 'link-26');">append</a></tt><tt class="py-op">(</tt><tt class="py-name">f</tt><tt class="py-op">)</tt> </tt>
<a name="L200"></a><tt class="py-lineno">200</tt>  <tt class="py-line">    <tt class="py-keyword">return</tt> <tt class="py-name">frag_list</tt> </tt>
</div><a name="L201"></a><tt class="py-lineno">201</tt>  <tt class="py-line"> </tt>
<a name="L202"></a><tt class="py-lineno">202</tt>  <tt class="py-line"> </tt>
<a name="_map_fragment_list"></a><div id="_map_fragment_list-def"><a name="L203"></a><tt class="py-lineno">203</tt> <a class="py-toggle" href="#" id="_map_fragment_list-toggle" onclick="return toggle('_map_fragment_list');">-</a><tt class="py-line"><tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.PDB.FragmentMapper'-module.html#_map_fragment_list">_map_fragment_list</a><tt class="py-op">(</tt><tt class="py-param">flist</tt><tt class="py-op">,</tt> <tt class="py-param">reflist</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="_map_fragment_list-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="_map_fragment_list-expanded"><a name="L204"></a><tt class="py-lineno">204</tt>  <tt class="py-line">    <tt class="py-docstring">"""</tt> </tt>
<a name="L205"></a><tt class="py-lineno">205</tt>  <tt class="py-line"><tt class="py-docstring">    Map all frgaments in flist to the closest</tt> </tt>
<a name="L206"></a><tt class="py-lineno">206</tt>  <tt class="py-line"><tt class="py-docstring">    (in RMSD) fragment in reflist.</tt> </tt>
<a name="L207"></a><tt class="py-lineno">207</tt>  <tt class="py-line"><tt class="py-docstring"></tt> </tt>
<a name="L208"></a><tt class="py-lineno">208</tt>  <tt class="py-line"><tt class="py-docstring">    Returns a list of reflist indices.</tt> </tt>
<a name="L209"></a><tt class="py-lineno">209</tt>  <tt class="py-line"><tt class="py-docstring"></tt> </tt>
<a name="L210"></a><tt class="py-lineno">210</tt>  <tt class="py-line"><tt class="py-docstring">    @param flist: list of protein fragments</tt> </tt>
<a name="L211"></a><tt class="py-lineno">211</tt>  <tt class="py-line"><tt class="py-docstring">    @type flist: [L{Fragment}, L{Fragment}, ...]</tt> </tt>
<a name="L212"></a><tt class="py-lineno">212</tt>  <tt class="py-line"><tt class="py-docstring"></tt> </tt>
<a name="L213"></a><tt class="py-lineno">213</tt>  <tt class="py-line"><tt class="py-docstring">    @param reflist: list of reference (ie. library) fragments</tt> </tt>
<a name="L214"></a><tt class="py-lineno">214</tt>  <tt class="py-line"><tt class="py-docstring">    @type reflist: [L{Fragment}, L{Fragment}, ...]</tt> </tt>
<a name="L215"></a><tt class="py-lineno">215</tt>  <tt class="py-line"><tt class="py-docstring">    """</tt> </tt>
<a name="L216"></a><tt class="py-lineno">216</tt>  <tt class="py-line">    <tt class="py-name">mapped</tt><tt class="py-op">=</tt><tt class="py-op">[</tt><tt class="py-op">]</tt> </tt>
<a name="L217"></a><tt class="py-lineno">217</tt>  <tt class="py-line">    <tt class="py-keyword">for</tt> <tt class="py-name">f</tt> <tt class="py-keyword">in</tt> <tt class="py-name">flist</tt><tt class="py-op">:</tt> </tt>
<a name="L218"></a><tt class="py-lineno">218</tt>  <tt class="py-line">        <tt id="link-58" class="py-name" targets="Method Bio.Phylo.PhyloXMLIO.Writer.rank()=Bio.Phylo.PhyloXMLIO.Writer-class.html#rank"><a title="Bio.Phylo.PhyloXMLIO.Writer.rank" class="py-name" href="#" onclick="return doclink('link-58', 'rank', 'link-58');">rank</a></tt><tt class="py-op">=</tt><tt class="py-op">[</tt><tt class="py-op">]</tt> </tt>
<a name="L219"></a><tt class="py-lineno">219</tt>  <tt class="py-line">        <tt class="py-keyword">for</tt> <tt id="link-59" class="py-name"><a title="Bio.PDB.Polypeptide.i" class="py-name" href="#" onclick="return doclink('link-59', 'i', 'link-42');">i</a></tt> <tt class="py-keyword">in</tt> <tt id="link-60" class="py-name"><a title="Bio.Graphics.GenomeDiagram._Diagram.Diagram.range
Bio.Graphics.GenomeDiagram._FeatureSet.FeatureSet.range
Bio.Graphics.GenomeDiagram._Graph.GraphData.range
Bio.Graphics.GenomeDiagram._GraphSet.GraphSet.range
Bio.Graphics.GenomeDiagram._Track.Track.range" class="py-name" href="#" onclick="return doclink('link-60', 'range', 'link-43');">range</a></tt><tt class="py-op">(</tt><tt class="py-number">0</tt><tt class="py-op">,</tt> <tt class="py-name">len</tt><tt class="py-op">(</tt><tt class="py-name">reflist</tt><tt class="py-op">)</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L220"></a><tt class="py-lineno">220</tt>  <tt class="py-line">            <tt class="py-name">rf</tt><tt class="py-op">=</tt><tt class="py-name">reflist</tt><tt class="py-op">[</tt><tt id="link-61" class="py-name"><a title="Bio.PDB.Polypeptide.i" class="py-name" href="#" onclick="return doclink('link-61', 'i', 'link-42');">i</a></tt><tt class="py-op">]</tt> </tt>
<a name="L221"></a><tt class="py-lineno">221</tt>  <tt class="py-line">            <tt class="py-name">rms</tt><tt class="py-op">=</tt><tt class="py-name">f</tt><tt class="py-op">-</tt><tt class="py-name">rf</tt> </tt>
<a name="L222"></a><tt class="py-lineno">222</tt>  <tt class="py-line">            <tt id="link-62" class="py-name"><a title="Bio.Phylo.PhyloXMLIO.Writer.rank" class="py-name" href="#" onclick="return doclink('link-62', 'rank', 'link-58');">rank</a></tt><tt class="py-op">.</tt><tt id="link-63" class="py-name"><a title="Bio.Align.MultipleSeqAlignment.append
Bio.Crystal.Chain.append
Bio.SCOP.Raf.SeqMap.append
Bio.Seq.MutableSeq.append
Bio.Wise.psw.Alignment.append
Bio.Wise.psw.AlignmentColumn.append" class="py-name" href="#" onclick="return doclink('link-63', 'append', 'link-26');">append</a></tt><tt class="py-op">(</tt><tt class="py-op">(</tt><tt class="py-name">rms</tt><tt class="py-op">,</tt> <tt class="py-name">rf</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L223"></a><tt class="py-lineno">223</tt>  <tt class="py-line">        <tt id="link-64" class="py-name"><a title="Bio.Phylo.PhyloXMLIO.Writer.rank" class="py-name" href="#" onclick="return doclink('link-64', 'rank', 'link-58');">rank</a></tt><tt class="py-op">.</tt><tt id="link-65" class="py-name" targets="Method Bio.Align.MultipleSeqAlignment.sort()=Bio.Align.MultipleSeqAlignment-class.html#sort,Method Bio.PDB.Residue.DisorderedResidue.sort()=Bio.PDB.Residue.DisorderedResidue-class.html#sort,Method Bio.PDB.Residue.Residue.sort()=Bio.PDB.Residue.Residue-class.html#sort,Method Bio.Sequencing.Ace.ACEFileRecord.sort()=Bio.Sequencing.Ace.ACEFileRecord-class.html#sort"><a title="Bio.Align.MultipleSeqAlignment.sort
Bio.PDB.Residue.DisorderedResidue.sort
Bio.PDB.Residue.Residue.sort
Bio.Sequencing.Ace.ACEFileRecord.sort" class="py-name" href="#" onclick="return doclink('link-65', 'sort', 'link-65');">sort</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L224"></a><tt class="py-lineno">224</tt>  <tt class="py-line">        <tt class="py-name">fragment</tt><tt class="py-op">=</tt><tt id="link-66" class="py-name"><a title="Bio.Phylo.PhyloXMLIO.Writer.rank" class="py-name" href="#" onclick="return doclink('link-66', 'rank', 'link-58');">rank</a></tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt class="py-number">1</tt><tt class="py-op">]</tt> </tt>
<a name="L225"></a><tt class="py-lineno">225</tt>  <tt class="py-line">        <tt class="py-name">mapped</tt><tt class="py-op">.</tt><tt id="link-67" class="py-name"><a title="Bio.Align.MultipleSeqAlignment.append
Bio.Crystal.Chain.append
Bio.SCOP.Raf.SeqMap.append
Bio.Seq.MutableSeq.append
Bio.Wise.psw.Alignment.append
Bio.Wise.psw.AlignmentColumn.append" class="py-name" href="#" onclick="return doclink('link-67', 'append', 'link-26');">append</a></tt><tt class="py-op">(</tt><tt class="py-name">fragment</tt><tt class="py-op">)</tt> </tt>
<a name="L226"></a><tt class="py-lineno">226</tt>  <tt class="py-line">    <tt class="py-keyword">return</tt> <tt class="py-name">mapped</tt> </tt>
</div><a name="L227"></a><tt class="py-lineno">227</tt>  <tt class="py-line"> </tt>
<a name="L228"></a><tt class="py-lineno">228</tt>  <tt class="py-line"> </tt>
<a name="FragmentMapper"></a><div id="FragmentMapper-def"><a name="L229"></a><tt class="py-lineno">229</tt> <a class="py-toggle" href="#" id="FragmentMapper-toggle" onclick="return toggle('FragmentMapper');">-</a><tt class="py-line"><tt class="py-keyword">class</tt> <a class="py-def-name" href="Bio.PDB.FragmentMapper'.FragmentMapper-class.html">FragmentMapper</a><tt class="py-op">(</tt><tt class="py-base-class">object</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="FragmentMapper-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="FragmentMapper-expanded"><a name="L230"></a><tt class="py-lineno">230</tt>  <tt class="py-line">    <tt class="py-docstring">"""</tt> </tt>
<a name="L231"></a><tt class="py-lineno">231</tt>  <tt class="py-line"><tt class="py-docstring">    Map polypeptides in a model to lists of representative fragments.</tt> </tt>
<a name="L232"></a><tt class="py-lineno">232</tt>  <tt class="py-line"><tt class="py-docstring">    """</tt> </tt>
<a name="FragmentMapper.__init__"></a><div id="FragmentMapper.__init__-def"><a name="L233"></a><tt class="py-lineno">233</tt> <a class="py-toggle" href="#" id="FragmentMapper.__init__-toggle" onclick="return toggle('FragmentMapper.__init__');">-</a><tt class="py-line">    <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.PDB.FragmentMapper'.FragmentMapper-class.html#__init__">__init__</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">model</tt><tt class="py-op">,</tt> <tt class="py-param">lsize</tt><tt class="py-op">=</tt><tt class="py-number">20</tt><tt class="py-op">,</tt> <tt class="py-param">flength</tt><tt class="py-op">=</tt><tt class="py-number">5</tt><tt class="py-op">,</tt> <tt class="py-param">fdir</tt><tt class="py-op">=</tt><tt class="py-string">"."</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="FragmentMapper.__init__-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="FragmentMapper.__init__-expanded"><a name="L234"></a><tt class="py-lineno">234</tt>  <tt class="py-line">        <tt class="py-docstring">"""</tt> </tt>
<a name="L235"></a><tt class="py-lineno">235</tt>  <tt class="py-line"><tt class="py-docstring">        @param model: the model that will be mapped</tt> </tt>
<a name="L236"></a><tt class="py-lineno">236</tt>  <tt class="py-line"><tt class="py-docstring">        @type model: L{Model}</tt> </tt>
<a name="L237"></a><tt class="py-lineno">237</tt>  <tt class="py-line"><tt class="py-docstring"></tt> </tt>
<a name="L238"></a><tt class="py-lineno">238</tt>  <tt class="py-line"><tt class="py-docstring">        @param lsize: number of fragments in the library</tt> </tt>
<a name="L239"></a><tt class="py-lineno">239</tt>  <tt class="py-line"><tt class="py-docstring">        @type lsize: int</tt> </tt>
<a name="L240"></a><tt class="py-lineno">240</tt>  <tt class="py-line"><tt class="py-docstring"></tt> </tt>
<a name="L241"></a><tt class="py-lineno">241</tt>  <tt class="py-line"><tt class="py-docstring">        @param flength: length of fragments in the library</tt> </tt>
<a name="L242"></a><tt class="py-lineno">242</tt>  <tt class="py-line"><tt class="py-docstring">        @type flength: int</tt> </tt>
<a name="L243"></a><tt class="py-lineno">243</tt>  <tt class="py-line"><tt class="py-docstring"></tt> </tt>
<a name="L244"></a><tt class="py-lineno">244</tt>  <tt class="py-line"><tt class="py-docstring">        @param fdir: directory where the definition files are</tt> </tt>
<a name="L245"></a><tt class="py-lineno">245</tt>  <tt class="py-line"><tt class="py-docstring">            found (default=".")</tt> </tt>
<a name="L246"></a><tt class="py-lineno">246</tt>  <tt class="py-line"><tt class="py-docstring">        @type fdir: string</tt> </tt>
<a name="L247"></a><tt class="py-lineno">247</tt>  <tt class="py-line"><tt class="py-docstring">        """</tt> </tt>
<a name="L248"></a><tt class="py-lineno">248</tt>  <tt class="py-line">        <tt class="py-keyword">if</tt> <tt class="py-name">flength</tt><tt class="py-op">==</tt><tt class="py-number">5</tt><tt class="py-op">:</tt> </tt>
<a name="L249"></a><tt class="py-lineno">249</tt>  <tt class="py-line">            <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">edge</tt><tt class="py-op">=</tt><tt class="py-number">2</tt> </tt>
<a name="L250"></a><tt class="py-lineno">250</tt>  <tt class="py-line">        <tt class="py-keyword">elif</tt> <tt class="py-name">flength</tt><tt class="py-op">==</tt><tt class="py-number">7</tt><tt class="py-op">:</tt> </tt>
<a name="L251"></a><tt class="py-lineno">251</tt>  <tt class="py-line">            <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">edge</tt><tt class="py-op">=</tt><tt class="py-number">3</tt> </tt>
<a name="L252"></a><tt class="py-lineno">252</tt>  <tt class="py-line">        <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
<a name="L253"></a><tt class="py-lineno">253</tt>  <tt class="py-line">            <tt class="py-keyword">raise</tt> <tt id="link-68" class="py-name"><a title="Bio.PDB.PDBExceptions.PDBException" class="py-name" href="#" onclick="return doclink('link-68', 'PDBException', 'link-9');">PDBException</a></tt><tt class="py-op">(</tt><tt class="py-string">"Fragment length should be 5 or 7."</tt><tt class="py-op">)</tt> </tt>
<a name="L254"></a><tt class="py-lineno">254</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">flength</tt><tt class="py-op">=</tt><tt class="py-name">flength</tt> </tt>
<a name="L255"></a><tt class="py-lineno">255</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">lsize</tt><tt class="py-op">=</tt><tt class="py-name">lsize</tt> </tt>
<a name="L256"></a><tt class="py-lineno">256</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">reflist</tt><tt class="py-op">=</tt><tt id="link-69" class="py-name" targets="Function Bio.PDB.FragmentMapper'._read_fragments()=Bio.PDB.FragmentMapper%27-module.html#_read_fragments"><a title="Bio.PDB.FragmentMapper'._read_fragments" class="py-name" href="#" onclick="return doclink('link-69', '_read_fragments', 'link-69');">_read_fragments</a></tt><tt class="py-op">(</tt><tt class="py-name">lsize</tt><tt class="py-op">,</tt> <tt class="py-name">flength</tt><tt class="py-op">,</tt> <tt class="py-name">fdir</tt><tt class="py-op">)</tt> </tt>
<a name="L257"></a><tt class="py-lineno">257</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">model</tt><tt class="py-op">=</tt><tt class="py-name">model</tt> </tt>
<a name="L258"></a><tt class="py-lineno">258</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">fd</tt><tt class="py-op">=</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-70" class="py-name" targets="Method Bio.PDB.FragmentMapper'.FragmentMapper._map()=Bio.PDB.FragmentMapper%27.FragmentMapper-class.html#_map"><a title="Bio.PDB.FragmentMapper'.FragmentMapper._map" class="py-name" href="#" onclick="return doclink('link-70', '_map', 'link-70');">_map</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">model</tt><tt class="py-op">)</tt> </tt>
</div><a name="L259"></a><tt class="py-lineno">259</tt>  <tt class="py-line"> </tt>
<a name="FragmentMapper._map"></a><div id="FragmentMapper._map-def"><a name="L260"></a><tt class="py-lineno">260</tt> <a class="py-toggle" href="#" id="FragmentMapper._map-toggle" onclick="return toggle('FragmentMapper._map');">-</a><tt class="py-line">    <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.PDB.FragmentMapper'.FragmentMapper-class.html#_map">_map</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">model</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="FragmentMapper._map-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="FragmentMapper._map-expanded"><a name="L261"></a><tt class="py-lineno">261</tt>  <tt class="py-line">        <tt class="py-docstring">"""</tt> </tt>
<a name="L262"></a><tt class="py-lineno">262</tt>  <tt class="py-line"><tt class="py-docstring">        @param model: the model that will be mapped</tt> </tt>
<a name="L263"></a><tt class="py-lineno">263</tt>  <tt class="py-line"><tt class="py-docstring">        @type model: L{Model}</tt> </tt>
<a name="L264"></a><tt class="py-lineno">264</tt>  <tt class="py-line"><tt class="py-docstring">        """</tt> </tt>
<a name="L265"></a><tt class="py-lineno">265</tt>  <tt class="py-line">        <tt class="py-name">ppb</tt><tt class="py-op">=</tt><tt id="link-71" class="py-name"><a title="Bio.PDB.Polypeptide.PPBuilder" class="py-name" href="#" onclick="return doclink('link-71', 'PPBuilder', 'link-17');">PPBuilder</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L266"></a><tt class="py-lineno">266</tt>  <tt class="py-line">        <tt class="py-name">ppl</tt><tt class="py-op">=</tt><tt class="py-name">ppb</tt><tt class="py-op">.</tt><tt id="link-72" class="py-name" targets="Method Bio.PDB.Polypeptide._PPBuilder.build_peptides()=Bio.PDB.Polypeptide._PPBuilder-class.html#build_peptides"><a title="Bio.PDB.Polypeptide._PPBuilder.build_peptides" class="py-name" href="#" onclick="return doclink('link-72', 'build_peptides', 'link-72');">build_peptides</a></tt><tt class="py-op">(</tt><tt class="py-name">model</tt><tt class="py-op">)</tt> </tt>
<a name="L267"></a><tt class="py-lineno">267</tt>  <tt class="py-line">        <tt class="py-name">fd</tt><tt class="py-op">=</tt><tt class="py-op">{</tt><tt class="py-op">}</tt> </tt>
<a name="L268"></a><tt class="py-lineno">268</tt>  <tt class="py-line">        <tt class="py-keyword">for</tt> <tt class="py-name">pp</tt> <tt class="py-keyword">in</tt> <tt class="py-name">ppl</tt><tt class="py-op">:</tt> </tt>
<a name="L269"></a><tt class="py-lineno">269</tt>  <tt class="py-line">            <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
<a name="L270"></a><tt class="py-lineno">270</tt>  <tt class="py-line">                <tt class="py-comment"># make fragments</tt> </tt>
<a name="L271"></a><tt class="py-lineno">271</tt>  <tt class="py-line">                <tt class="py-name">flist</tt><tt class="py-op">=</tt><tt id="link-73" class="py-name" targets="Function Bio.PDB.FragmentMapper'._make_fragment_list()=Bio.PDB.FragmentMapper%27-module.html#_make_fragment_list"><a title="Bio.PDB.FragmentMapper'._make_fragment_list" class="py-name" href="#" onclick="return doclink('link-73', '_make_fragment_list', 'link-73');">_make_fragment_list</a></tt><tt class="py-op">(</tt><tt class="py-name">pp</tt><tt class="py-op">,</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">flength</tt><tt class="py-op">)</tt> </tt>
<a name="L272"></a><tt class="py-lineno">272</tt>  <tt class="py-line">                <tt class="py-comment"># classify fragments</tt> </tt>
<a name="L273"></a><tt class="py-lineno">273</tt>  <tt class="py-line">                <tt class="py-name">mflist</tt><tt class="py-op">=</tt><tt id="link-74" class="py-name" targets="Function Bio.PDB.FragmentMapper'._map_fragment_list()=Bio.PDB.FragmentMapper%27-module.html#_map_fragment_list"><a title="Bio.PDB.FragmentMapper'._map_fragment_list" class="py-name" href="#" onclick="return doclink('link-74', '_map_fragment_list', 'link-74');">_map_fragment_list</a></tt><tt class="py-op">(</tt><tt class="py-name">flist</tt><tt class="py-op">,</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">reflist</tt><tt class="py-op">)</tt> </tt>
<a name="L274"></a><tt class="py-lineno">274</tt>  <tt class="py-line">                <tt class="py-keyword">for</tt> <tt id="link-75" class="py-name"><a title="Bio.PDB.Polypeptide.i" class="py-name" href="#" onclick="return doclink('link-75', 'i', 'link-42');">i</a></tt> <tt class="py-keyword">in</tt> <tt id="link-76" class="py-name"><a title="Bio.Graphics.GenomeDiagram._Diagram.Diagram.range
Bio.Graphics.GenomeDiagram._FeatureSet.FeatureSet.range
Bio.Graphics.GenomeDiagram._Graph.GraphData.range
Bio.Graphics.GenomeDiagram._GraphSet.GraphSet.range
Bio.Graphics.GenomeDiagram._Track.Track.range" class="py-name" href="#" onclick="return doclink('link-76', 'range', 'link-43');">range</a></tt><tt class="py-op">(</tt><tt class="py-number">0</tt><tt class="py-op">,</tt> <tt class="py-name">len</tt><tt class="py-op">(</tt><tt class="py-name">pp</tt><tt class="py-op">)</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L275"></a><tt class="py-lineno">275</tt>  <tt class="py-line">                    <tt class="py-name">res</tt><tt class="py-op">=</tt><tt class="py-name">pp</tt><tt class="py-op">[</tt><tt id="link-77" class="py-name"><a title="Bio.PDB.Polypeptide.i" class="py-name" href="#" onclick="return doclink('link-77', 'i', 'link-42');">i</a></tt><tt class="py-op">]</tt> </tt>
<a name="L276"></a><tt class="py-lineno">276</tt>  <tt class="py-line">                    <tt class="py-keyword">if</tt> <tt id="link-78" class="py-name"><a title="Bio.PDB.Polypeptide.i" class="py-name" href="#" onclick="return doclink('link-78', 'i', 'link-42');">i</a></tt><tt class="py-op">&lt;</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">edge</tt><tt class="py-op">:</tt> </tt>
<a name="L277"></a><tt class="py-lineno">277</tt>  <tt class="py-line">                        <tt class="py-comment"># start residues</tt> </tt>
<a name="L278"></a><tt class="py-lineno">278</tt>  <tt class="py-line">                        <tt class="py-keyword">continue</tt> </tt>
<a name="L279"></a><tt class="py-lineno">279</tt>  <tt class="py-line">                    <tt class="py-keyword">elif</tt> <tt id="link-79" class="py-name"><a title="Bio.PDB.Polypeptide.i" class="py-name" href="#" onclick="return doclink('link-79', 'i', 'link-42');">i</a></tt><tt class="py-op">&gt;=</tt><tt class="py-op">(</tt><tt class="py-name">len</tt><tt class="py-op">(</tt><tt class="py-name">pp</tt><tt class="py-op">)</tt><tt class="py-op">-</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">edge</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L280"></a><tt class="py-lineno">280</tt>  <tt class="py-line">                        <tt class="py-comment"># end residues</tt> </tt>
<a name="L281"></a><tt class="py-lineno">281</tt>  <tt class="py-line">                        <tt class="py-keyword">continue</tt> </tt>
<a name="L282"></a><tt class="py-lineno">282</tt>  <tt class="py-line">                    <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
<a name="L283"></a><tt class="py-lineno">283</tt>  <tt class="py-line">                        <tt class="py-comment"># fragment</tt> </tt>
<a name="L284"></a><tt class="py-lineno">284</tt>  <tt class="py-line">                        <tt id="link-80" class="py-name" targets="Method Bio.Crystal.Chain.index()=Bio.Crystal.Chain-class.html#index,Method Bio.SCOP.Raf.SeqMap.index()=Bio.SCOP.Raf.SeqMap-class.html#index,Method Bio.Seq.MutableSeq.index()=Bio.Seq.MutableSeq-class.html#index,Function Bio.SeqIO.index()=Bio.SeqIO-module.html#index"><a title="Bio.Crystal.Chain.index
Bio.SCOP.Raf.SeqMap.index
Bio.Seq.MutableSeq.index
Bio.SeqIO.index" class="py-name" href="#" onclick="return doclink('link-80', 'index', 'link-80');">index</a></tt><tt class="py-op">=</tt><tt id="link-81" class="py-name"><a title="Bio.PDB.Polypeptide.i" class="py-name" href="#" onclick="return doclink('link-81', 'i', 'link-42');">i</a></tt><tt class="py-op">-</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">edge</tt> </tt>
<a name="L285"></a><tt class="py-lineno">285</tt>  <tt class="py-line">                        <tt class="py-keyword">assert</tt><tt class="py-op">(</tt><tt id="link-82" class="py-name"><a title="Bio.Crystal.Chain.index
Bio.SCOP.Raf.SeqMap.index
Bio.Seq.MutableSeq.index
Bio.SeqIO.index" class="py-name" href="#" onclick="return doclink('link-82', 'index', 'link-80');">index</a></tt><tt class="py-op">&gt;=</tt><tt class="py-number">0</tt><tt class="py-op">)</tt> </tt>
<a name="L286"></a><tt class="py-lineno">286</tt>  <tt class="py-line">                        <tt class="py-name">fd</tt><tt class="py-op">[</tt><tt class="py-name">res</tt><tt class="py-op">]</tt><tt class="py-op">=</tt><tt class="py-name">mflist</tt><tt class="py-op">[</tt><tt id="link-83" class="py-name"><a title="Bio.Crystal.Chain.index
Bio.SCOP.Raf.SeqMap.index
Bio.Seq.MutableSeq.index
Bio.SeqIO.index" class="py-name" href="#" onclick="return doclink('link-83', 'index', 'link-80');">index</a></tt><tt class="py-op">]</tt> </tt>
<a name="L287"></a><tt class="py-lineno">287</tt>  <tt class="py-line">            <tt class="py-keyword">except</tt> <tt id="link-84" class="py-name"><a title="Bio.PDB.PDBExceptions.PDBException" class="py-name" href="#" onclick="return doclink('link-84', 'PDBException', 'link-9');">PDBException</a></tt><tt class="py-op">,</tt> <tt class="py-name">why</tt><tt class="py-op">:</tt> </tt>
<a name="L288"></a><tt class="py-lineno">288</tt>  <tt class="py-line">                <tt class="py-keyword">if</tt> <tt class="py-name">why</tt> <tt class="py-op">==</tt> <tt class="py-string">'CHAINBREAK'</tt><tt class="py-op">:</tt> </tt>
<a name="L289"></a><tt class="py-lineno">289</tt>  <tt class="py-line">                    <tt class="py-comment"># Funny polypeptide - skip</tt> </tt>
<a name="L290"></a><tt class="py-lineno">290</tt>  <tt class="py-line">                    <tt class="py-keyword">pass</tt> </tt>
<a name="L291"></a><tt class="py-lineno">291</tt>  <tt class="py-line">                <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
<a name="L292"></a><tt class="py-lineno">292</tt>  <tt class="py-line">                    <tt class="py-keyword">raise</tt> <tt id="link-85" class="py-name"><a title="Bio.PDB.PDBExceptions.PDBException" class="py-name" href="#" onclick="return doclink('link-85', 'PDBException', 'link-9');">PDBException</a></tt><tt class="py-op">(</tt><tt class="py-name">why</tt><tt class="py-op">)</tt> </tt>
<a name="L293"></a><tt class="py-lineno">293</tt>  <tt class="py-line">        <tt class="py-keyword">return</tt> <tt class="py-name">fd</tt> </tt>
</div><a name="L294"></a><tt class="py-lineno">294</tt>  <tt class="py-line"> </tt>
<a name="FragmentMapper.has_key"></a><div id="FragmentMapper.has_key-def"><a name="L295"></a><tt class="py-lineno">295</tt> <a class="py-toggle" href="#" id="FragmentMapper.has_key-toggle" onclick="return toggle('FragmentMapper.has_key');">-</a><tt class="py-line">    <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.PDB.FragmentMapper'.FragmentMapper-class.html#has_key">has_key</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">res</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="FragmentMapper.has_key-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="FragmentMapper.has_key-expanded"><a name="L296"></a><tt class="py-lineno">296</tt>  <tt class="py-line">        <tt class="py-docstring">"""(Obsolete)</tt> </tt>
<a name="L297"></a><tt class="py-lineno">297</tt>  <tt class="py-line"><tt class="py-docstring"></tt> </tt>
<a name="L298"></a><tt class="py-lineno">298</tt>  <tt class="py-line"><tt class="py-docstring">        @type res: L{Residue}</tt> </tt>
<a name="L299"></a><tt class="py-lineno">299</tt>  <tt class="py-line"><tt class="py-docstring">        """</tt> </tt>
<a name="L300"></a><tt class="py-lineno">300</tt>  <tt class="py-line">        <tt class="py-keyword">import</tt> <tt class="py-name">warnings</tt> </tt>
<a name="L301"></a><tt class="py-lineno">301</tt>  <tt class="py-line">        <tt class="py-name">warnings</tt><tt class="py-op">.</tt><tt class="py-name">warn</tt><tt class="py-op">(</tt><tt class="py-string">"has_key is obsolete; use 'res in object' instead"</tt><tt class="py-op">,</tt> <tt class="py-name">PendingDeprecationWarning</tt><tt class="py-op">)</tt> </tt>
<a name="L302"></a><tt class="py-lineno">302</tt>  <tt class="py-line">        <tt class="py-keyword">return</tt> <tt class="py-op">(</tt><tt class="py-name">res</tt> <tt class="py-keyword">in</tt> <tt class="py-name">self</tt><tt class="py-op">)</tt> </tt>
</div><a name="L303"></a><tt class="py-lineno">303</tt>  <tt class="py-line"> </tt>
<a name="FragmentMapper.__contains__"></a><div id="FragmentMapper.__contains__-def"><a name="L304"></a><tt class="py-lineno">304</tt> <a class="py-toggle" href="#" id="FragmentMapper.__contains__-toggle" onclick="return toggle('FragmentMapper.__contains__');">-</a><tt class="py-line">    <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.PDB.FragmentMapper'.FragmentMapper-class.html#__contains__">__contains__</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">res</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="FragmentMapper.__contains__-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="FragmentMapper.__contains__-expanded"><a name="L305"></a><tt class="py-lineno">305</tt>  <tt class="py-line">        <tt class="py-docstring">"""True if the given residue is in any of the mapped fragments.</tt> </tt>
<a name="L306"></a><tt class="py-lineno">306</tt>  <tt class="py-line"><tt class="py-docstring"></tt> </tt>
<a name="L307"></a><tt class="py-lineno">307</tt>  <tt class="py-line"><tt class="py-docstring">        @type res: L{Residue}</tt> </tt>
<a name="L308"></a><tt class="py-lineno">308</tt>  <tt class="py-line"><tt class="py-docstring">        """</tt> </tt>
<a name="L309"></a><tt class="py-lineno">309</tt>  <tt class="py-line">        <tt class="py-keyword">return</tt> <tt class="py-op">(</tt><tt class="py-name">res</tt> <tt class="py-keyword">in</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">fd</tt><tt class="py-op">)</tt> </tt>
</div><a name="L310"></a><tt class="py-lineno">310</tt>  <tt class="py-line"> </tt>
<a name="FragmentMapper.__getitem__"></a><div id="FragmentMapper.__getitem__-def"><a name="L311"></a><tt class="py-lineno">311</tt> <a class="py-toggle" href="#" id="FragmentMapper.__getitem__-toggle" onclick="return toggle('FragmentMapper.__getitem__');">-</a><tt class="py-line">    <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.PDB.FragmentMapper'.FragmentMapper-class.html#__getitem__">__getitem__</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">res</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="FragmentMapper.__getitem__-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="FragmentMapper.__getitem__-expanded"><a name="L312"></a><tt class="py-lineno">312</tt>  <tt class="py-line">        <tt class="py-docstring">"""</tt> </tt>
<a name="L313"></a><tt class="py-lineno">313</tt>  <tt class="py-line"><tt class="py-docstring">        @type res: L{Residue}</tt> </tt>
<a name="L314"></a><tt class="py-lineno">314</tt>  <tt class="py-line"><tt class="py-docstring"></tt> </tt>
<a name="L315"></a><tt class="py-lineno">315</tt>  <tt class="py-line"><tt class="py-docstring">        @return: fragment classification</tt> </tt>
<a name="L316"></a><tt class="py-lineno">316</tt>  <tt class="py-line"><tt class="py-docstring">        @rtype: L{Fragment}</tt> </tt>
<a name="L317"></a><tt class="py-lineno">317</tt>  <tt class="py-line"><tt class="py-docstring">        """</tt> </tt>
<a name="L318"></a><tt class="py-lineno">318</tt>  <tt class="py-line">        <tt class="py-keyword">return</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">fd</tt><tt class="py-op">[</tt><tt class="py-name">res</tt><tt class="py-op">]</tt> </tt>
</div></div><a name="L319"></a><tt class="py-lineno">319</tt>  <tt class="py-line"> </tt>
<a name="L320"></a><tt class="py-lineno">320</tt>  <tt class="py-line"> </tt>
<a name="L321"></a><tt class="py-lineno">321</tt>  <tt class="py-line"><tt class="py-keyword">if</tt> <tt class="py-name">__name__</tt><tt class="py-op">==</tt><tt class="py-string">"__main__"</tt><tt class="py-op">:</tt> </tt>
<a name="L322"></a><tt class="py-lineno">322</tt>  <tt class="py-line"> </tt>
<a name="L323"></a><tt class="py-lineno">323</tt>  <tt class="py-line">    <tt class="py-keyword">import</tt> <tt class="py-name">sys</tt> </tt>
<a name="L324"></a><tt class="py-lineno">324</tt>  <tt class="py-line"> </tt>
<a name="L325"></a><tt class="py-lineno">325</tt>  <tt class="py-line">    <tt class="py-name">p</tt><tt class="py-op">=</tt><tt id="link-86" class="py-name"><a title="Bio.PDB.PDBParser'.PDBParser" class="py-name" href="#" onclick="return doclink('link-86', 'PDBParser', 'link-12');">PDBParser</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L326"></a><tt class="py-lineno">326</tt>  <tt class="py-line">    <tt class="py-name">s</tt><tt class="py-op">=</tt><tt class="py-name">p</tt><tt class="py-op">.</tt><tt id="link-87" class="py-name" targets="Method Bio.PDB.MMCIFParser.MMCIFParser.get_structure()=Bio.PDB.MMCIFParser.MMCIFParser-class.html#get_structure,Method Bio.PDB.PDBParser'.PDBParser.get_structure()=Bio.PDB.PDBParser%27.PDBParser-class.html#get_structure,Method Bio.PDB.StructureBuilder.StructureBuilder.get_structure()=Bio.PDB.StructureBuilder.StructureBuilder-class.html#get_structure"><a title="Bio.PDB.MMCIFParser.MMCIFParser.get_structure
Bio.PDB.PDBParser'.PDBParser.get_structure
Bio.PDB.StructureBuilder.StructureBuilder.get_structure" class="py-name" href="#" onclick="return doclink('link-87', 'get_structure', 'link-87');">get_structure</a></tt><tt class="py-op">(</tt><tt class="py-string">"X"</tt><tt class="py-op">,</tt> <tt class="py-name">sys</tt><tt class="py-op">.</tt><tt class="py-name">argv</tt><tt class="py-op">[</tt><tt class="py-number">1</tt><tt class="py-op">]</tt><tt class="py-op">)</tt> </tt>
<a name="L327"></a><tt class="py-lineno">327</tt>  <tt class="py-line"> </tt>
<a name="L328"></a><tt class="py-lineno">328</tt>  <tt class="py-line">    <tt class="py-name">m</tt><tt class="py-op">=</tt><tt class="py-name">s</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt> </tt>
<a name="L329"></a><tt class="py-lineno">329</tt>  <tt class="py-line">    <tt class="py-name">fm</tt><tt class="py-op">=</tt><tt id="link-88" class="py-name" targets="Class Bio.PDB.FragmentMapper'.FragmentMapper=Bio.PDB.FragmentMapper%27.FragmentMapper-class.html"><a title="Bio.PDB.FragmentMapper'.FragmentMapper" class="py-name" href="#" onclick="return doclink('link-88', 'FragmentMapper', 'link-88');">FragmentMapper</a></tt><tt class="py-op">(</tt><tt class="py-name">m</tt><tt class="py-op">,</tt> <tt class="py-number">10</tt><tt class="py-op">,</tt> <tt class="py-number">5</tt><tt class="py-op">,</tt> <tt class="py-string">"levitt_data"</tt><tt class="py-op">)</tt> </tt>
<a name="L330"></a><tt class="py-lineno">330</tt>  <tt class="py-line"> </tt>
<a name="L331"></a><tt class="py-lineno">331</tt>  <tt class="py-line"> </tt>
<a name="L332"></a><tt class="py-lineno">332</tt>  <tt class="py-line">    <tt class="py-keyword">for</tt> <tt class="py-name">r</tt> <tt class="py-keyword">in</tt> <tt id="link-89" class="py-name"><a title="Bio.GA.Selection
Bio.PDB.Selection" class="py-name" href="#" onclick="return doclink('link-89', 'Selection', 'link-5');">Selection</a></tt><tt class="py-op">.</tt><tt id="link-90" class="py-name" targets="Function Bio.PDB.Selection.unfold_entities()=Bio.PDB.Selection-module.html#unfold_entities"><a title="Bio.PDB.Selection.unfold_entities" class="py-name" href="#" onclick="return doclink('link-90', 'unfold_entities', 'link-90');">unfold_entities</a></tt><tt class="py-op">(</tt><tt class="py-name">m</tt><tt class="py-op">,</tt> <tt class="py-string">"R"</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L333"></a><tt class="py-lineno">333</tt>  <tt class="py-line"> </tt>
<a name="L334"></a><tt class="py-lineno">334</tt>  <tt class="py-line">        <tt class="py-keyword">print</tt> <tt class="py-name">r</tt><tt class="py-op">,</tt> </tt>
<a name="L335"></a><tt class="py-lineno">335</tt>  <tt class="py-line">        <tt class="py-keyword">if</tt> <tt class="py-name">r</tt> <tt class="py-keyword">in</tt> <tt class="py-name">fm</tt><tt class="py-op">:</tt> </tt>
<a name="L336"></a><tt class="py-lineno">336</tt>  <tt class="py-line">            <tt class="py-keyword">print</tt> <tt class="py-name">fm</tt><tt class="py-op">[</tt><tt class="py-name">r</tt><tt class="py-op">]</tt> </tt>
<a name="L337"></a><tt class="py-lineno">337</tt>  <tt class="py-line">        <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
<a name="L338"></a><tt class="py-lineno">338</tt>  <tt class="py-line">            <tt class="py-keyword">print</tt> </tt>
<a name="L339"></a><tt class="py-lineno">339</tt>  <tt class="py-line"> </tt><script type="text/javascript">
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