<?xml version="1.0" encoding="ascii"?> <!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "DTD/xhtml1-transitional.dtd"> <html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en"> <head> <title>Bio.PopGen</title> <link rel="stylesheet" href="epydoc.css" type="text/css" /> <script type="text/javascript" src="epydoc.js"></script> </head> <body bgcolor="white" text="black" link="blue" vlink="#204080" alink="#204080"> <!-- ==================== NAVIGATION BAR ==================== --> <table class="navbar" border="0" width="100%" cellpadding="0" bgcolor="#a0c0ff" cellspacing="0"> <tr valign="middle"> <!-- Tree link --> <th> <a href="module-tree.html">Trees</a> </th> <!-- Index link --> <th> <a href="identifier-index.html">Indices</a> </th> <!-- Help link --> <th> <a href="help.html">Help</a> </th> <th class="navbar" width="100%"></th> </tr> </table> <table width="100%" cellpadding="0" cellspacing="0"> <tr valign="top"> <td width="100%"> <span class="breadcrumbs"> <a href="Bio-module.html">Package Bio</a> :: Package PopGen </span> </td> <td> <table cellpadding="0" cellspacing="0"> <!-- hide/show private --> <tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink" onclick="toggle_private();">hide private</a>]</span></td></tr> <tr><td align="right"><span class="options" >[<a href="frames.html" target="_top">frames</a >] | <a href="Bio.PopGen-module.html" target="_top">no frames</a>]</span></td></tr> </table> </td> </tr> </table> <!-- ==================== PACKAGE DESCRIPTION ==================== --> <h1 class="epydoc">Package PopGen</h1><p class="nomargin-top"><span class="codelink"><a href="Bio.PopGen-pysrc.html">source code</a></span></p> <p>PopGen: Population Genetics and Genomics library in Python</p> <!-- ==================== SUBMODULES ==================== --> <a name="section-Submodules"></a> <table class="summary" border="1" cellpadding="3" cellspacing="0" width="100%" bgcolor="white"> <tr bgcolor="#70b0f0" class="table-header"> <td colspan="2" class="table-header"> <table border="0" cellpadding="0" cellspacing="0" width="100%"> <tr valign="top"> <td align="left"><span class="table-header">Submodules</span></td> <td align="right" valign="top" ><span class="options">[<a href="#section-Submodules" class="privatelink" onclick="toggle_private();" >hide private</a>]</span></td> </tr> </table> </td> </tr> <tr><td class="summary"> <ul class="nomargin"> <li> <strong class="uidlink"><a href="Bio.PopGen.Async-module.html">Bio.PopGen.Async</a></strong>: <em class="summary">Support for asynchronous execution.</em> <ul> <li> <strong class="uidlink"><a href="Bio.PopGen.Async.Local-module.html">Bio.PopGen.Async.Local</a></strong>: <em class="summary">Asynchronous local execution.</em> </li> </ul> </li> <li> <strong class="uidlink"><a href="Bio.PopGen.FDist-module.html">Bio.PopGen.FDist</a></strong>: <em class="summary">This module provides code to work with FDist.</em> <ul> <li> <strong class="uidlink"><a href="Bio.PopGen.FDist.Async-module.html">Bio.PopGen.FDist.Async</a></strong>: <em class="summary">This modules allows for asynchronous execution of Fdist and spliting of loads.</em> </li> <li> <strong class="uidlink"><a href="Bio.PopGen.FDist.Controller-module.html">Bio.PopGen.FDist.Controller</a></strong>: <em class="summary">This module allows to control fdist.</em> </li> <li> <strong class="uidlink"><a href="Bio.PopGen.FDist.Utils-module.html">Bio.PopGen.FDist.Utils</a></strong> </li> </ul> </li> <li> <strong class="uidlink"><a href="Bio.PopGen.GenePop-module.html">Bio.PopGen.GenePop</a></strong>: <em class="summary">This module provides code to work with GenePop.</em> <ul> <li> <strong class="uidlink"><a href="Bio.PopGen.GenePop.Controller-module.html">Bio.PopGen.GenePop.Controller</a></strong>: <em class="summary">This module allows to control GenePop.</em> </li> <li> <strong class="uidlink"><a href="Bio.PopGen.GenePop.EasyController-module.html">Bio.PopGen.GenePop.EasyController</a></strong>: <em class="summary">This module allows to control GenePop through an easier interface.</em> </li> <li> <strong class="uidlink"><a href="Bio.PopGen.GenePop.FileParser-module.html">Bio.PopGen.GenePop.FileParser</a></strong>: <em class="summary">This class provides code to parse BIG GenePop files.</em> </li> <li> <strong class="uidlink"><a href="Bio.PopGen.GenePop.LargeFileParser-module.html">Bio.PopGen.GenePop.LargeFileParser</a></strong>: <em class="summary">Large file parsing of Genepop files</em> </li> <li> <strong class="uidlink"><a href="Bio.PopGen.GenePop.Utils-module.html">Bio.PopGen.GenePop.Utils</a></strong> </li> </ul> </li> <li> <strong class="uidlink"><a href="Bio.PopGen.SimCoal-module.html">Bio.PopGen.SimCoal</a></strong>: <em class="summary">SimCoal2 execution module and support functions.</em> <ul> <li> <strong class="uidlink"><a href="Bio.PopGen.SimCoal.Async-module.html">Bio.PopGen.SimCoal.Async</a></strong>: <em class="summary">This module allows to cache Simcoal2 results, and return on the fly in case the calculation was done.</em> </li> <li> <strong class="uidlink"><a href="Bio.PopGen.SimCoal.Cache-module.html">Bio.PopGen.SimCoal.Cache</a></strong>: <em class="summary">This module allows to cache Simcoal2 results, and return on the fly in case the calculation was done.</em> </li> <li> <strong class="uidlink"><a href="Bio.PopGen.SimCoal.Controller-module.html">Bio.PopGen.SimCoal.Controller</a></strong>: <em class="summary">This module allows you to control Simcoal2.</em> </li> <li> <strong class="uidlink"><a href="Bio.PopGen.SimCoal.Template-module.html">Bio.PopGen.SimCoal.Template</a></strong> </li> </ul> </li> </ul></td></tr> </table> <br /> <!-- ==================== VARIABLES ==================== --> <a name="section-Variables"></a> <table class="summary" border="1" cellpadding="3" cellspacing="0" width="100%" bgcolor="white"> <tr bgcolor="#70b0f0" class="table-header"> <td colspan="2" class="table-header"> <table border="0" cellpadding="0" cellspacing="0" width="100%"> <tr valign="top"> <td align="left"><span class="table-header">Variables</span></td> <td align="right" valign="top" ><span class="options">[<a href="#section-Variables" class="privatelink" onclick="toggle_private();" >hide private</a>]</span></td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <a name="__package__"></a><span class="summary-name">__package__</span> = <code title="None">None</code><br /> hash(x) </td> </tr> </table> <!-- ==================== NAVIGATION BAR ==================== --> <table class="navbar" border="0" width="100%" cellpadding="0" bgcolor="#a0c0ff" cellspacing="0"> <tr valign="middle"> <!-- Tree link --> <th> <a href="module-tree.html">Trees</a> </th> <!-- Index link --> <th> <a 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