Sophie

Sophie

distrib > * > cooker > x86_64 > by-pkgid > 81d588151a531fb794755a2311262132 > files

R-Rsamtools-1.6.3-2.x86_64.rpm

Files

drwxr-xr-x 4096 root root /usr/lib64/R/library/Rsamtools
-rw-r--r-- 1088 root root /usr/lib64/R/library/Rsamtools/DESCRIPTION
-rw-r--r-- 1999 root root /usr/lib64/R/library/Rsamtools/INDEX
-rw-r--r-- 1155 root root /usr/lib64/R/library/Rsamtools/LICENSE
drwxr-xr-x 4096 root root /usr/lib64/R/library/Rsamtools/Meta
-rw-r--r-- 1145 root root /usr/lib64/R/library/Rsamtools/NAMESPACE
-rw-r--r-- 4102 root root /usr/lib64/R/library/Rsamtools/NEWS
drwxr-xr-x 4096 root root /usr/lib64/R/library/Rsamtools/R
drwxr-xr-x 4096 root root /usr/lib64/R/library/Rsamtools/doc
drwxr-xr-x 4096 root root /usr/lib64/R/library/Rsamtools/extdata
drwxr-xr-x 4096 root root /usr/lib64/R/library/Rsamtools/help
drwxr-xr-x 4096 root root /usr/lib64/R/library/Rsamtools/html
drwxr-xr-x 4096 root root /usr/lib64/R/library/Rsamtools/include
drwxr-xr-x 4096 root root /usr/lib64/R/library/Rsamtools/libs
drwxr-xr-x 4096 root root /usr/lib64/R/library/Rsamtools/scripts
drwxr-xr-x 4096 root root /usr/lib64/R/library/Rsamtools/unitTests
drwxr-xr-x 4096 root root /usr/lib64/R/library/Rsamtools/usretc
drwxr-xr-x 4096 root root /usr/lib64/R/library/Rsamtools/usrlib
-rw-r--r-- 2537 root root /usr/lib64/R/library/Rsamtools/Meta/Rd.rds
-rw-r--r-- 2644 root root /usr/lib64/R/library/Rsamtools/Meta/hsearch.rds
-rw-r--r-- 1850 root root /usr/lib64/R/library/Rsamtools/Meta/links.rds
-rw-r--r-- 626 root root /usr/lib64/R/library/Rsamtools/Meta/nsInfo.rds
-rw-r--r-- 1149 root root /usr/lib64/R/library/Rsamtools/Meta/package.rds
-rw-r--r-- 279 root root /usr/lib64/R/library/Rsamtools/Meta/vignette.rds
-rw-r--r-- 383 root root /usr/lib64/R/library/Rsamtools/R/Rsamtools
-rw-r--r--358778 root root /usr/lib64/R/library/Rsamtools/R/Rsamtools.rdb
-rw-r--r-- 4920 root root /usr/lib64/R/library/Rsamtools/R/Rsamtools.rdx
-rw-r--r-- 9406 root root /usr/lib64/R/library/Rsamtools/doc/Rsamtools-Overview.R
-rw-r--r-- 19903 root root /usr/lib64/R/library/Rsamtools/doc/Rsamtools-Overview.Rnw
-rw-r--r--189045 root root /usr/lib64/R/library/Rsamtools/doc/Rsamtools-Overview.pdf
-rw-r--r-- 3646 root root /usr/lib64/R/library/Rsamtools/doc/Rsamtools-UsingCLibraries.Rnw
-rw-r--r--107239 root root /usr/lib64/R/library/Rsamtools/doc/Rsamtools-UsingCLibraries.pdf
-rw-r--r-- 1614 root root /usr/lib64/R/library/Rsamtools/doc/index.html
-rw-r--r-- 20480 root root /usr/lib64/R/library/Rsamtools/extdata/CaffeineTxdb.sqlite
-rw-r--r-- 176 root root /usr/lib64/R/library/Rsamtools/extdata/ce2dict1.fa
-rw-r--r-- 112 root root /usr/lib64/R/library/Rsamtools/extdata/ce2dict1.fa.fai
-rw-r--r--126539 root root /usr/lib64/R/library/Rsamtools/extdata/ex1.bam
-rw-r--r-- 72 root root /usr/lib64/R/library/Rsamtools/extdata/ex1.bam.bai
-rw-r--r-- 74700 root root /usr/lib64/R/library/Rsamtools/extdata/ex1.bcf
-rw-r--r-- 77 root root /usr/lib64/R/library/Rsamtools/extdata/ex1.bcf.bci
-rw-r--r--559422 root root /usr/lib64/R/library/Rsamtools/extdata/ex1.sam
-rw-r--r-- 3778 root root /usr/lib64/R/library/Rsamtools/extdata/example.gtf.gz
-rw-r--r-- 259 root root /usr/lib64/R/library/Rsamtools/extdata/example.gtf.gz.tbi
-rw-r--r--746266 root root /usr/lib64/R/library/Rsamtools/extdata/olaps.Rda
-rw-r--r--138598 root root /usr/lib64/R/library/Rsamtools/extdata/pileup.txt
-rw-r--r-- 364 root root /usr/lib64/R/library/Rsamtools/extdata/samtools-svninfo.txt
-rw-r--r-- 2808 root root /usr/lib64/R/library/Rsamtools/extdata/slxMaq09_urls.txt
drwxr-xr-x 4096 root root /usr/lib64/R/library/Rsamtools/extdata/tophat
-rw-r--r-- 36 root root /usr/lib64/R/library/Rsamtools/extdata/tophat/README
-rw-r--r-- 36039 root root /usr/lib64/R/library/Rsamtools/extdata/tophat/accepted_hits.sam
-rw-r--r-- 4381 root root /usr/lib64/R/library/Rsamtools/extdata/tophat/coverage.wig
-rw-r--r-- 196 root root /usr/lib64/R/library/Rsamtools/extdata/tophat/junctions.bed
-rw-r--r-- 9131 root root /usr/lib64/R/library/Rsamtools/help/AnIndex
-rw-r--r--134216 root root /usr/lib64/R/library/Rsamtools/help/Rsamtools.rdb
-rw-r--r-- 684 root root /usr/lib64/R/library/Rsamtools/help/Rsamtools.rdx
-rw-r--r-- 1878 root root /usr/lib64/R/library/Rsamtools/help/aliases.rds
-rw-r--r-- 309 root root /usr/lib64/R/library/Rsamtools/help/paths.rds
-rw-r--r-- 31412 root root /usr/lib64/R/library/Rsamtools/html/00Index.html
-rw-r--r-- 10836 root root /usr/lib64/R/library/Rsamtools/html/BamFile-class.html
-rw-r--r-- 13752 root root /usr/lib64/R/library/Rsamtools/html/BamViews-class.html
-rw-r--r-- 4821 root root /usr/lib64/R/library/Rsamtools/html/BcfFile-class.html
-rw-r--r-- 6407 root root /usr/lib64/R/library/Rsamtools/html/FaFile-class.html
-rw-r--r-- 4670 root root /usr/lib64/R/library/Rsamtools/html/PileupFiles-class.html
-rw-r--r-- 7458 root root /usr/lib64/R/library/Rsamtools/html/PileupParam-class.html
-rw-r--r-- 1179 root root /usr/lib64/R/library/Rsamtools/html/R.css
-rw-r--r-- 1523 root root /usr/lib64/R/library/Rsamtools/html/Rsamtools-package.html
-rw-r--r-- 2557 root root /usr/lib64/R/library/Rsamtools/html/RsamtoolsFile-class.html
-rw-r--r-- 2270 root root /usr/lib64/R/library/Rsamtools/html/RsamtoolsFileList-class.html
-rw-r--r-- 11264 root root /usr/lib64/R/library/Rsamtools/html/ScanBamParam-class.html
-rw-r--r-- 4970 root root /usr/lib64/R/library/Rsamtools/html/ScanBcfParam-class.html
-rw-r--r-- 5999 root root /usr/lib64/R/library/Rsamtools/html/TabixFile-class.html
-rw-r--r-- 4524 root root /usr/lib64/R/library/Rsamtools/html/applyPileups.html
-rw-r--r-- 1668 root root /usr/lib64/R/library/Rsamtools/html/headerTabix.html
-rw-r--r-- 3158 root root /usr/lib64/R/library/Rsamtools/html/indexTabix.html
-rw-r--r-- 5731 root root /usr/lib64/R/library/Rsamtools/html/readBamGappedAlignments.html
-rw-r--r-- 3633 root root /usr/lib64/R/library/Rsamtools/html/readPileup.html
-rw-r--r-- 10802 root root /usr/lib64/R/library/Rsamtools/html/scanBam.html
-rw-r--r-- 10102 root root /usr/lib64/R/library/Rsamtools/html/scanBcf.html
-rw-r--r-- 3524 root root /usr/lib64/R/library/Rsamtools/html/scanFa.html
-rw-r--r-- 2059 root root /usr/lib64/R/library/Rsamtools/html/scanTabix.html
-rw-r--r-- 1575 root root /usr/lib64/R/library/Rsamtools/html/seqnamesTabix.html
-rw-r--r-- 1546 root root /usr/lib64/R/library/Rsamtools/html/yieldTabix.html
-rw-r--r-- 2130 root root /usr/lib64/R/library/Rsamtools/html/zip.html
drwxr-xr-x 4096 root root /usr/lib64/R/library/Rsamtools/include/samtools
drwxr-xr-x 4096 root root /usr/lib64/R/library/Rsamtools/include/tabix
-rw-r--r-- 24720 root root /usr/lib64/R/library/Rsamtools/include/samtools/bam.h
-rw-r--r-- 1064 root root /usr/lib64/R/library/Rsamtools/include/samtools/bam_endian.h
drwxr-xr-x 4096 root root /usr/lib64/R/library/Rsamtools/include/samtools/bcftools
-rw-r--r-- 4617 root root /usr/lib64/R/library/Rsamtools/include/samtools/bgzf.h
-rw-r--r-- 3188 root root /usr/lib64/R/library/Rsamtools/include/samtools/faidx.h
-rw-r--r-- 2072 root root /usr/lib64/R/library/Rsamtools/include/samtools/kaln.h
-rw-r--r-- 17815 root root /usr/lib64/R/library/Rsamtools/include/samtools/khash.h
-rw-r--r-- 1720 root root /usr/lib64/R/library/Rsamtools/include/samtools/knetfile.h
-rw-r--r-- 1568 root root /usr/lib64/R/library/Rsamtools/include/samtools/kprobaln.h
-rw-r--r-- 8266 root root /usr/lib64/R/library/Rsamtools/include/samtools/kseq.h
-rw-r--r-- 10105 root root /usr/lib64/R/library/Rsamtools/include/samtools/ksort.h
-rw-r--r-- 2661 root root /usr/lib64/R/library/Rsamtools/include/samtools/kstring.h
-rw-r--r-- 4137 root root /usr/lib64/R/library/Rsamtools/include/samtools/razf.h
-rw-r--r-- 2625 root root /usr/lib64/R/library/Rsamtools/include/samtools/sam.h
-rw-r--r-- 643 root root /usr/lib64/R/library/Rsamtools/include/samtools/sam_header.h
-rw-r--r-- 6853 root root /usr/lib64/R/library/Rsamtools/include/samtools/bcftools/bcf.h
-rw-r--r-- 1228 root root /usr/lib64/R/library/Rsamtools/include/samtools/bcftools/prob1.h
-rw-r--r-- 4712 root root /usr/lib64/R/library/Rsamtools/include/tabix/tabix.h
-rwxr-xr-x358776 root root /usr/lib64/R/library/Rsamtools/libs/Rsamtools.so
-rw-r--r-- 3002 root root /usr/lib64/R/library/Rsamtools/scripts/BamViews-1000g.R
-rw-r--r-- 998 root root /usr/lib64/R/library/Rsamtools/scripts/features.R
-rw-r--r-- 3386 root root /usr/lib64/R/library/Rsamtools/scripts/readAligned_prototype.R
-rw-r--r-- 763 root root /usr/lib64/R/library/Rsamtools/scripts/remote_test.R
-rwxr-xr-x 1174 root root /usr/lib64/R/library/Rsamtools/scripts/update-samtools.sh
drwxr-xr-x 4096 root root /usr/lib64/R/library/Rsamtools/unitTests/cases
-rw-r--r-- 657 root root /usr/lib64/R/library/Rsamtools/unitTests/test_BamFile.R
-rw-r--r-- 6496 root root /usr/lib64/R/library/Rsamtools/unitTests/test_BamViews.R
-rw-r--r-- 2610 root root /usr/lib64/R/library/Rsamtools/unitTests/test_BcfFile.R
-rw-r--r-- 2450 root root /usr/lib64/R/library/Rsamtools/unitTests/test_FaFile.R
-rw-r--r-- 1889 root root /usr/lib64/R/library/Rsamtools/unitTests/test_TabixFile.R
-rw-r--r-- 6883 root root /usr/lib64/R/library/Rsamtools/unitTests/test_applyPileups.R
-rw-r--r-- 549 root root /usr/lib64/R/library/Rsamtools/unitTests/test_asBam.R
-rw-r--r-- 11393 root root /usr/lib64/R/library/Rsamtools/unitTests/test_bam.R
-rw-r--r-- 1631 root root /usr/lib64/R/library/Rsamtools/unitTests/test_bam_count.R
-rw-r--r-- 304 root root /usr/lib64/R/library/Rsamtools/unitTests/test_bam_header.R
-rw-r--r-- 1962 root root /usr/lib64/R/library/Rsamtools/unitTests/test_normalize_RangesList.R
-rw-r--r-- 3930 root root /usr/lib64/R/library/Rsamtools/unitTests/test_readAligned.R
-rw-r--r-- 1229 root root /usr/lib64/R/library/Rsamtools/unitTests/test_readBamGappedAlignments.R
-rw-r--r-- 1185 root root /usr/lib64/R/library/Rsamtools/unitTests/test_readPileup.R
-rw-r--r-- 343 root root /usr/lib64/R/library/Rsamtools/unitTests/test_scanBamFlag.R
-rw-r--r-- 540 root root /usr/lib64/R/library/Rsamtools/unitTests/test_sortBam_test.R
-rw-r--r-- 392 root root /usr/lib64/R/library/Rsamtools/unitTests/test_utilities.R
-rw-r--r--114590 root root /usr/lib64/R/library/Rsamtools/unitTests/cases/ex1.sam.gz
-rw-r--r--126539 root root /usr/lib64/R/library/Rsamtools/unitTests/cases/ex1_noindex.bam
-rw-r--r-- 42031 root root /usr/lib64/R/library/Rsamtools/unitTests/cases/ex1_shuf1000.bam
-rw-r--r-- 72 root root /usr/lib64/R/library/Rsamtools/unitTests/cases/ex1_shuf1000.bam.bai
-rw-r--r--155405 root root /usr/lib64/R/library/Rsamtools/unitTests/cases/ex1_unsort.bam
-rw-r--r-- 1608 root root /usr/lib64/R/library/Rsamtools/unitTests/cases/pileup-no-stars.txt
-rw-r--r-- 246 root root /usr/lib64/R/library/Rsamtools/unitTests/cases/plp_refskip.bam
-rw-r--r-- 96 root root /usr/lib64/R/library/Rsamtools/unitTests/cases/plp_refskip.bam.bai
-rw-r--r-- 377 root root /usr/lib64/R/library/Rsamtools/usretc/Rsamtools.mk
-rw-r--r--801808 root root /usr/lib64/R/library/Rsamtools/usrlib/libbam.a
-rw-r--r--276944 root root /usr/lib64/R/library/Rsamtools/usrlib/libbcf.a
-rw-r--r--257446 root root /usr/lib64/R/library/Rsamtools/usrlib/libtabix.a