Sophie

Sophie

distrib > Fedora > 14 > x86_64 > by-pkgid > 0574b44b887114c5912824c1fbcee654 > files > 2509

apbs-doc-1.2.1-3.fc14.x86_64.rpm

<area shape="rect" href="$vpmg&#45;private_8h.html#9803b64d96685d27923d899ef6f4c5cd" title="Fill boundary condition arrays." alt="" coords="157,362,218,389">
<area shape="rect" href="$vpmg&#45;private_8h.html#da65af06c9af5bf4ee593cb051bd0b0d" title="Top&#45;level driver to fill source term charge array." alt="" coords="866,413,959,440">
<area shape="rect" href="$vpmg&#45;private_8h.html#169088d2631112390e9699d0ff25ab0a" title="Top&#45;level driver to fill all operator coefficient arrays." alt="" coords="149,1452,226,1478">
<area shape="rect" href="$group__Vpbe.html#g49a4178cddec98a0388a0b0a42b402ad" title="Get bulk ionic strength." alt="" coords="1265,1528,1449,1554">
<area shape="rect" href="$group__Vpbe.html#g0aac5d03d89f4a9c5b5a93e853325e0d" title="Get solute dielectric constant." alt="" coords="1286,1578,1427,1605">
<area shape="rect" href="$group__Vpbe.html#g71c1fc1e8901630a97cf0f2bf0fcb18f" title="Get solvent dielectric constant." alt="" coords="1283,1224,1430,1250">
<area shape="rect" href="$vpmg&#45;private_8h.html#2fe0074cd016170f829d76a856409185" title="Fill source term charge array from a pre&#45;calculated map." alt="" coords="1070,413,1190,440">
<area shape="rect" href="$vpmg&#45;private_8h.html#7e7a2991c9f8b5e9a4a06843aecd38ae" title="Fill source term charge array from linear interpolation." alt="" coords="1061,565,1199,592">
<area shape="rect" href="$vpmg&#45;private_8h.html#6074122271a6957f5d463aa95c90f61c" title="Fill source term charge array from cubic spline interpolation." alt="" coords="1061,514,1199,541">
<area shape="rect" href="$vpmg&#45;private_8h.html#e84de46101d6abe2046ae860b55832a0" title="Fill source term charge array for use of induced dipoles." alt="" coords="1062,8,1198,34">
<area shape="rect" href="$vpmg&#45;private_8h.html#6139befcbac10d86518d7b4cd397204a" title="Fill source term charge array for non&#45;local induced dipoles." alt="" coords="1054,58,1206,85">
<area shape="rect" href="$vpmg&#45;private_8h.html#a349fa04ad1c57df769345d4bcad28ce" title="Fill source term charge array for the use of permanent multipoles." alt="" coords="1045,362,1215,389">
<area shape="rect" href="$group__Vgrid.html#g082b052479c1629216b691e788e91aac" title="Get potential value (from mesh or approximation) at a point." alt="" coords="1310,413,1403,440">
<area shape="rect" href="$group__Vpbe.html#geb447cb04d310e06a5edd1b96bbc52bb" title="Get charge scaling factor." alt="" coords="1295,464,1418,490">
<area shape="rect" href="$group__Valist.html#g6e228909b1e2c178ee292ae97c5bce62" title="Get pointer to particular atom in list." alt="" coords="1301,970,1413,997">
<area shape="rect" href="$group__Valist.html#g2aea567c031963b275f4e6e31f9c3e74" title="Get number of atoms in the list." alt="" coords="1273,1021,1441,1048">
<area shape="rect" href="$group__Vatom.html#g6123ac049c637301d5aa730c18c94756" title="Get atomic charge." alt="" coords="1291,514,1422,541">
<area shape="rect" href="$group__Vatom.html#gbe19ed4ab35365a2e8f7505bcbb6bca2" title="Get atomic position." alt="" coords="1498,894,1634,921">
<area shape="rect" href="$vpmg&#45;private_8h.html#50d8ef438d4a7a76d869fb256b24d372" title="Evaluate a cubic B&#45;spline." alt="" coords="1321,565,1393,592">
<area shape="rect" href="$vpmg&#45;private_8h.html#c953c7091df8e4a1df53463baf8fe7ee" title="Evaluate a 5th Order B&#45;Spline (4th order polynomial)." alt="" coords="1321,210,1393,237">
<area shape="rect" href="$vpmg&#45;private_8h.html#fa58365e9d16b810f6fe926558650108" title="Evaluate the 2nd derivative of a 5th Order B&#45;Spline." alt="" coords="1314,261,1399,288">
<area shape="rect" href="$vpmg&#45;private_8h.html#91d1557ecff0ea7809aface06c0c179e" title="Evaluate a 5th Order B&#45;Spline derivative (4th order polynomial)." alt="" coords="1317,312,1397,338">
<area shape="rect" href="$vpmg&#45;private_8h.html#fcf864c3b65f0d536a2985d931dc4692" title="Return 2.5 plus difference of i &#45; f." alt="" coords="1322,160,1391,186">
<area shape="rect" href="$vpmg&#45;private_8h.html#35949511a7f2779c8ac7e7c88bdca001" title="Fill operator coefficient arrays from pre&#45;calculated maps." alt="" coords="433,1401,537,1428">
<area shape="rect" href="$vpmg&#45;private_8h.html#62617829770eaed11c159947453e457c" title="Fill operator coefficient arrays from a molecular surface calculation." alt="" coords="275,1350,374,1377">
<area shape="rect" href="$vpmg&#45;private_8h.html#61365ff4cedaf084ea6d960d432a3d03" title="Fill operator coefficient arrays from a spline&#45;based surface calculation." alt="" coords="1073,1376,1187,1402">
<area shape="rect" href="$vpmg&#45;private_8h.html#b7b5543b591c9433e7190a2fe45b4ca2" title="Fill operator coefficient arrays from a 5th order polynomial based surface calculation..." alt="" coords="1069,1553,1191,1580">
<area shape="rect" href="$vpmg&#45;private_8h.html#be8b2056b56093552215f2e97c8f5c1b" title="Fill operator coefficient arrays from a 7th order polynomial based surface calculation..." alt="" coords="1069,1426,1191,1453">
<area shape="rect" href="$vpmg&#45;private_8h.html#34484f0f2f254b954abf20c5a98ab9d4" title="Fill differential operator coefficient arrays from a molecular surface calculation..." alt="" coords="423,1274,546,1301">
<area shape="rect" href="$vpmg&#45;private_8h.html#9217fdfc8737424d5e5ccc1193f9c3b0" title="Fill ion (nonlinear) operator coefficient array from a molecular surface calculation..." alt="" coords="1071,1122,1189,1149">
<area shape="rect" href="$vpmg&#45;private_8h.html#df9fff114eed3d5d94f3adbbf9527483" title="Fill differential operator coefficient arrays from a molecular surface calculation..." alt="" coords="594,1072,781,1098">
<area shape="rect" href="$vpmg&#45;private_8h.html#afab27ad33274047911bd2ec092eb265" title="Fill differential operator coefficient arrays from a molecular surface calculation..." alt="" coords="603,1274,771,1301">
<area shape="rect" href="$vpmg&#45;private_8h.html#ac867a97b6a1b573c285c846237837a5" title="Mark the grid points inside a sphere with a particular value. This marks by resetting..." alt="" coords="1310,1072,1403,1098">
<area shape="rect" href="$group__Vacc.html#gea1fe0e1ddebb4f1ae9dac8a78902220" title="Return the atomic solvent accessible surface area (SASA)." alt="" coords="850,818,975,845">
<area shape="rect" href="$group__Vatom.html#gd3538039818c4279eb8a6b0e806dea7b" title="Get atomic position." alt="" coords="1502,1401,1630,1428">
<area shape="rect" href="$group__Vacc.html#g031408ad5ca9a5bdb7fd9ae1b6e08150" title="Get the set of points for this atom&#39;s solvent&#45;accessible surface." alt="" coords="835,666,990,693">
<area shape="rect" href="$group__Vpbe.html#ga843cef9ae694579b2e2ea9d87f80408" title="Get solvent molecule radius." alt="" coords="830,1122,995,1149">
<area shape="rect" href="$group__Vacc.html#g6e118e97d0ef09899dd376b6eda231a7" title="Set up an array of points corresponding to the SAS due to a particular atom." alt="" coords="1299,768,1414,794">
<area shape="rect" href="$group__Vatom.html#g37404117f53ad617e4371df8a7c849bb" title="Get atom ID." alt="" coords="1501,616,1631,642">
<area shape="rect" href="$group__Vacc.html#g7a741d87762baf5906802b6b9a670080" title="Build the solvent accessible surface (SAS) and calculate the solvent accessible surface..." alt="" coords="1083,869,1177,896">
<area shape="rect" href="$group__Vacc.html#g90b879964a5faa185a82dc2f7c736a15" title="Destroy the surface object." alt="" coords="1299,818,1414,845">
<area shape="rect" href="$vacc_8c.html#5c6356f19e11daf8d0dea84bd92cc226" title="Determines if a point is within the union of the spheres centered at the atomic centers..." alt="" coords="1510,742,1622,769">
<area shape="rect" href="$group__Vacc.html#gf645f700c467833a3611fadb606d16e5" title="Allocate and construct the surface object; do not assign surface points to positions..." alt="" coords="1513,793,1619,820">
<area shape="rect" href="$group__Vclist.html#g13dc2b36b0eb96f433ee79566bdd45e4" title="Return cell corresponding to specified position or return VNULL." alt="" coords="1695,742,1799,769">
<area shape="rect" href="$group__Vclist.html#ga67500e4f221d3f965c2ff48dee31593" title="Get the max probe radius value (in A) the cell list was constructed with." alt="" coords="1683,692,1811,718">
<area shape="rect" href="$group__Vacc.html#g7b5d73ff3b8ae17c8efad24ce683de78" title="Construct the surface object using previously allocated memory; do not assign surface..." alt="" coords="1690,793,1805,820">
<area shape="rect" href="$group__Vpbe.html#g97920614b496aee5cde2dd284f1ee8e7" title="Get maximum radius of ion species." alt="" coords="1274,1376,1439,1402">