<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN">
<html><head><meta http-equiv="Content-Type" content="text/html;charset=UTF-8">
<title>APBS: main.c File Reference</title>
<link href="apbs.css" rel="stylesheet" type="text/css">
<link href="tabs.css" rel="stylesheet" type="text/css">
</head><body>
<!-- Generated by Doxygen 1.5.7.1 -->
<div class="navigation" id="top">
<div class="tabs">
<ul>
<li><a href="index.html"><span>Main Page</span></a></li>
<li><a href="pages.html"><span>Related Pages</span></a></li>
<li><a href="modules.html"><span>Modules</span></a></li>
<li><a href="annotated.html"><span>Data Structures</span></a></li>
<li class="current"><a href="files.html"><span>Files</span></a></li>
</ul>
</div>
<div class="tabs">
<ul>
<li><a href="files.html"><span>File List</span></a></li>
<li><a href="globals.html"><span>Globals</span></a></li>
</ul>
</div>
</div>
<div class="contents">
<h1>main.c File Reference</h1>APBS "front end" program using formatted input files.
<a href="#_details">More...</a>
<p>
<code>#include "apbscfg.h"</code><br>
<code>#include "<a class="el" href="apbs_8h-source.html">apbs/apbs.h</a>"</code><br>
<code>#include "<a class="el" href="nosh_8h-source.html">apbs/nosh.h</a>"</code><br>
<code>#include "<a class="el" href="mgparm_8h-source.html">apbs/mgparm.h</a>"</code><br>
<code>#include "<a class="el" href="pbeparm_8h-source.html">apbs/pbeparm.h</a>"</code><br>
<code>#include "<a class="el" href="femparm_8h-source.html">apbs/femparm.h</a>"</code><br>
<code>#include "<a class="el" href="routines_8h-source.html">routines.h</a>"</code><br>
<p>
<div class="dynheader">
Include dependency graph for main.c:</div>
<div class="dynsection">
<p><center><img src="main_8c__incl.png" border="0" usemap="#main.c_map" alt=""></center>
<map name="main.c_map">
<area shape="rect" href="apbs_8h.html" title="Top-level header for APBS." alt="" coords="1758,157,1852,184"><area shape="rect" href="femparm_8h.html" title="Contains declarations for class APOLparm." alt="" coords="2725,306,2845,333"><area shape="rect" href="mgparm_8h.html" title="Contains declarations for class MGparm." alt="" coords="2485,381,2600,408"><area shape="rect" href="nosh_8h.html" title="Contains declarations for class NOsh." alt="" coords="2504,232,2600,258"><area shape="rect" href="pbeparm_8h.html" title="Contains declarations for class PBEparm." alt="" coords="2381,306,2498,333"><area shape="rect" href="routines_8h.html" title="Header file for front end auxiliary routines." alt="" coords="2374,82,2457,109"><area shape="rect" href="vhal_8h.html" title="Contains generic macro definitions for APBS." alt="" coords="2293,754,2384,781"><area shape="rect" href="vstring_8h.html" title="Contains declarations for class Vstring." alt="" coords="1941,680,2048,706"><area shape="rect" href="vparam_8h.html" title="Contains declarations for class Vparam." alt="" coords="1486,605,1596,632"><area shape="rect" href="vunit_8h.html" title="Contains a collection of useful constants and conversion factors." alt="" coords="565,680,661,706"><area shape="rect" href="valist_8h.html" title="Contains declarations for class Valist." alt="" coords="1224,530,1320,557"><area shape="rect" href="vatom_8h.html" title="Contains declarations for class Vatom." alt="" coords="908,605,1009,632"><area shape="rect" href="vacc_8h.html" title="Contains declarations for class Vacc." alt="" coords="921,381,1014,408"><area shape="rect" href="vcap_8h.html" title="Contains declarations for class Vcap." alt="" coords="388,306,481,333"><area shape="rect" href="vgreen_8h.html" title="Contains declarations for class Vgreen." alt="" coords="1005,456,1112,482"><area shape="rect" href="vpbe_8h.html" title="Contains declarations for class Vpbe." alt="" coords="892,306,985,333"><area shape="rect" href="vgrid_8h.html" title="Potential oracle for Cartesian mesh data." alt="" coords="2050,605,2146,632"><area shape="rect" href="vmgrid_8h.html" title="Multiresolution oracle for Cartesian mesh data." alt="" coords="1992,530,2098,557"><area shape="rect" href="vopot_8h.html" title="Potential oracle for Cartesian mesh data." alt="" coords="976,232,1074,258"><area shape="rect" href="vpmg_8h.html" title="Contains declarations for class Vpmg." alt="" coords="1802,232,1901,258"><area shape="rect" href="vpmgp_8h.html" title="Contains declarations for class Vpmgp." alt="" coords="2149,306,2256,333"><area shape="rect" href="vfetk_8h.html" title="Contains declarations for class Vfetk." alt="" coords="1424,232,1517,258"><area shape="rect" href="vpee_8h.html" title="Contains declarations for class Vpee." alt="" coords="413,456,506,482"><area shape="rect" href="apolparm_8h-source.html" title="apbs/apolparm.h" alt="" coords="1744,530,1866,557"><area shape="rect" href="vclist_8h.html" title="Contains declarations for class Vclist." alt="" coords="834,456,930,482"><area shape="rect" href="vcsm_8h.html" title="Contains declarations for the Vcsm class." alt="" coords="1592,456,1688,482"></map>
</div>
<table border="0" cellpadding="0" cellspacing="0">
<tr><td></td></tr>
<tr><td colspan="2"><br><h2>Functions</h2></td></tr>
<tr><td class="memItemLeft" nowrap align="right" valign="top">int </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Frontend.html#g3c04138a5bfe5d72780bb7e82a18e627">main</a> (int argc, char **argv)</td></tr>
<tr><td class="mdescLeft"> </td><td class="mdescRight">The main APBS function. <a href="group__Frontend.html#g3c04138a5bfe5d72780bb7e82a18e627"></a><br></td></tr>
</table>
<hr><a name="_details"></a><h2>Detailed Description</h2>
APBS "front end" program using formatted input files.
<p>
<dl class="author" compact><dt><b>Author:</b></dt><dd>Nathan Baker This driver program represents a mish-mash of instructions for calculating electrostatic potentials, as well as free energies of binding and solvation. It is invoked as:</dd></dl>
apbs apbs.in<p>
where apbs.in is a formatted input file (see documentation and examples).<p>
<dl class="version" compact><dt><b>Version:</b></dt><dd></dd></dl>
<dl class="rcs" compact><dt><b>Id</b></dt><dd><a class="el" href="main_8c.html" title="APBS "front end" program using formatted input files.">main.c</a> 1351 2009-02-12 01:26:03Z yhuang01 </dd></dl>
<dl class="attention" compact><dt><b>Attention:</b></dt><dd><div class="fragment"><pre class="fragment">
*
* APBS -- Adaptive Poisson-Boltzmann Solver
*
* Nathan A. Baker (baker@biochem.wustl.edu)
* Dept. of Biochemistry and Molecular Biophysics
* Center for Computational Biology
* Washington University in St. Louis
*
* Additional contributing authors listed in the code documentation.
*
* Copyright (c) 2002-2009, Washington University in St. Louis.
* Portions Copyright (c) 2002-2009. Nathan A. Baker
* Portions Copyright (c) 1999-2002. The Regents of the University of California.
* Portions Copyright (c) 1995. Michael Holst
*
* All rights reserved.
*
* Redistribution and use in source and binary forms, with or without
* modification, are permitted provided that the following conditions are met:
*
* - Redistributions of source code must retain the above copyright notice, this
* list of conditions and the following disclaimer.
*
* - Redistributions in binary form must reproduce the above copyright notice,
* this list of conditions and the following disclaimer in the documentation
* and/or other materials provided with the distribution.
*
* - Neither the name of Washington University in St. Louis nor the names of its
* contributors may be used to endorse or promote products derived from this
* software without specific prior written permission.
*
* THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
* "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
* LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR
* A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR
* CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
* EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
* PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
* PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF
* LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING
* NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
* SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
*
*
* </pre></div> </dd></dl>
</div>
<hr size="1"><address style="text-align: right;"><small>Generated on Thu Feb 12 06:23:50 2009 for APBS by
<a href="http://www.doxygen.org/index.html">
<img src="doxygen.png" alt="doxygen" align="middle" border="0"></a> 1.5.7.1 </small></address>
</body>
</html>
