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<h1>valist.h File Reference</h1>Contains declarations for class Valist.
<a href="#_details">More...</a>
<p>
<code>#include "maloc/maloc.h"</code><br>
<code>#include "<a class="el" href="vhal_8h-source.html">apbs/vhal.h</a>"</code><br>
<code>#include "<a class="el" href="vatom_8h-source.html">apbs/vatom.h</a>"</code><br>
<code>#include "<a class="el" href="vparam_8h-source.html">apbs/vparam.h</a>"</code><br>
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Include dependency graph for valist.h:</div>
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<p><center><img src="valist_8h__incl.png" border="0" usemap="#valist.h_map" alt=""></center>
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This graph shows which files directly or indirectly include this file:</div>
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<area shape="rect" href="vopot_8h.html" title="Potential oracle for Cartesian mesh data." alt="" coords="157,306,223,333"><area shape="rect" href="apbs_8h.html" title="Top-level header for APBS." alt="" coords="335,381,397,407"><area shape="rect" href="nosh_8h.html" title="Contains declarations for class NOsh." alt="" coords="71,306,133,333"><area shape="rect" href="vacc_8h.html" title="Contains declarations for class Vacc." alt="" coords="485,157,546,183"><area shape="rect" href="vclist_8h.html" title="Contains declarations for class Vclist." alt="" coords="401,82,465,109"><area shape="rect" href="vgreen_8h.html" title="Contains declarations for class Vgreen." alt="" coords="693,231,767,258"><area shape="rect" href="valist_8c.html" title="Class Valist methods." alt="" coords="657,82,721,109"><area shape="rect" href="vcsm_8h.html" title="Contains declarations for the Vcsm class." alt="" coords="566,82,633,109"><area shape="rect" href="vopot_8c.html" title="Class Vopot methods." alt="" coords="245,381,311,407"><area shape="rect" href="mgparm_8c.html" title="Class MGparm methods." alt="" coords="351,455,431,482"><area shape="rect" href="main_8c.html" title="APBS "front end" program using formatted input files." alt="" coords="177,530,238,557"><area shape="rect" href="routines_8h.html" title="Header file for front end auxiliary routines." alt="" coords="245,455,327,482"><area shape="rect" href="routines_8c.html" title="Supporting routines for APBS front end." alt="" coords="345,530,425,557"><area shape="rect" href="nosh_8c.html" title="Class NOsh methods." alt="" coords="58,381,119,407"><area shape="rect" href="vpmg_8h.html" title="Contains declarations for class Vpmg." alt="" coords="485,306,551,333"><area shape="rect" href="vpbe_8h.html" title="Contains declarations for class Vpbe." alt="" coords="346,231,410,258"><area shape="rect" href="vacc_8c.html" title="Class Vacc methods." alt="" coords="485,231,546,258"><area shape="rect" href="vpmg-private_8h.html" title="Class Vpmg private method declaration." alt="" coords="421,381,533,407"><area shape="rect" href="vpmg_8c.html" title="Class Vpmg methods." alt="" coords="522,455,589,482"><area shape="rect" href="vpbe_8c.html" title="Class Vpbe methods." alt="" coords="298,306,359,333"><area shape="rect" href="vfetk_8h.html" title="Contains declarations for class Vfetk." alt="" coords="626,306,690,333"><area shape="rect" href="vfetk_8c.html" title="Class Vfetk methods." alt="" coords="709,381,770,407"><area shape="rect" href="vclist_8c.html" title="Class Vclist methods." alt="" coords="397,157,461,183"><area shape="rect" href="vgreen_8c.html" title="Class Vgreen methods." alt="" coords="714,306,789,333"><area shape="rect" href="vcsm_8c.html" title="Class Vcsm methods." alt="" coords="666,157,730,183"></map>
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<a href="valist_8h-source.html">Go to the source code of this file.</a><table border="0" cellpadding="0" cellspacing="0">
<tr><td></td></tr>
<tr><td colspan="2"><br><h2>Data Structures</h2></td></tr>
<tr><td class="memItemLeft" nowrap align="right" valign="top">struct </td><td class="memItemRight" valign="bottom"><a class="el" href="structsValist.html">sValist</a></td></tr>
<tr><td class="mdescLeft"> </td><td class="mdescRight">Container class for list of atom objects. <a href="structsValist.html#_details">More...</a><br></td></tr>
<tr><td colspan="2"><br><h2>Typedefs</h2></td></tr>
<tr><td class="memItemLeft" nowrap align="right" valign="top"><a class="anchor" name="gad14444b05c0349e90134d0184af1188"></a><!-- doxytag: member="valist.h::Valist" ref="gad14444b05c0349e90134d0184af1188" args="" -->
typedef struct <a class="el" href="structsValist.html">sValist</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Valist.html#gad14444b05c0349e90134d0184af1188">Valist</a></td></tr>
<tr><td class="mdescLeft"> </td><td class="mdescRight">Declaration of the Valist class as the Valist structure. <br></td></tr>
<tr><td colspan="2"><br><h2>Functions</h2></td></tr>
<tr><td class="memItemLeft" nowrap align="right" valign="top"><a class="el" href="structsVatom.html">Vatom</a> * </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Valist.html#ga6b04488b680202d8de65ce87ed9b586">Valist_getAtomList</a> (<a class="el" href="structsValist.html">Valist</a> *thee)</td></tr>
<tr><td class="mdescLeft"> </td><td class="mdescRight">Get actual array of atom objects from the list. <a href="group__Valist.html#ga6b04488b680202d8de65ce87ed9b586"></a><br></td></tr>
<tr><td class="memItemLeft" nowrap align="right" valign="top">double </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Valist.html#g621fbdbd50e1498274df95f078cdde44">Valist_getCenterX</a> (<a class="el" href="structsValist.html">Valist</a> *thee)</td></tr>
<tr><td class="mdescLeft"> </td><td class="mdescRight">Get x-coordinate of molecule center. <a href="group__Valist.html#g621fbdbd50e1498274df95f078cdde44"></a><br></td></tr>
<tr><td class="memItemLeft" nowrap align="right" valign="top">double </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Valist.html#ge9a682cd35ecdf1826c2eb43b0740049">Valist_getCenterY</a> (<a class="el" href="structsValist.html">Valist</a> *thee)</td></tr>
<tr><td class="mdescLeft"> </td><td class="mdescRight">Get y-coordinate of molecule center. <a href="group__Valist.html#ge9a682cd35ecdf1826c2eb43b0740049"></a><br></td></tr>
<tr><td class="memItemLeft" nowrap align="right" valign="top">double </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Valist.html#gbe56a5254fd6cc0f724cbee2105d16d3">Valist_getCenterZ</a> (<a class="el" href="structsValist.html">Valist</a> *thee)</td></tr>
<tr><td class="mdescLeft"> </td><td class="mdescRight">Get z-coordinate of molecule center. <a href="group__Valist.html#gbe56a5254fd6cc0f724cbee2105d16d3"></a><br></td></tr>
<tr><td class="memItemLeft" nowrap align="right" valign="top">int </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Valist.html#g2aea567c031963b275f4e6e31f9c3e74">Valist_getNumberAtoms</a> (<a class="el" href="structsValist.html">Valist</a> *thee)</td></tr>
<tr><td class="mdescLeft"> </td><td class="mdescRight">Get number of atoms in the list. <a href="group__Valist.html#g2aea567c031963b275f4e6e31f9c3e74"></a><br></td></tr>
<tr><td class="memItemLeft" nowrap align="right" valign="top"><a class="el" href="structsVatom.html">Vatom</a> * </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Valist.html#g6e228909b1e2c178ee292ae97c5bce62">Valist_getAtom</a> (<a class="el" href="structsValist.html">Valist</a> *thee, int i)</td></tr>
<tr><td class="mdescLeft"> </td><td class="mdescRight">Get pointer to particular atom in list. <a href="group__Valist.html#g6e228909b1e2c178ee292ae97c5bce62"></a><br></td></tr>
<tr><td class="memItemLeft" nowrap align="right" valign="top">unsigned long int </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Valist.html#gca9784596feb23190c376fe10c85265f">Valist_memChk</a> (<a class="el" href="structsValist.html">Valist</a> *thee)</td></tr>
<tr><td class="mdescLeft"> </td><td class="mdescRight">Get total memory allocated for this object and its members. <a href="group__Valist.html#gca9784596feb23190c376fe10c85265f"></a><br></td></tr>
<tr><td class="memItemLeft" nowrap align="right" valign="top"><a class="el" href="structsValist.html">Valist</a> * </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Valist.html#g161c8bda69f6a37578011cc39b5630be">Valist_ctor</a> ()</td></tr>
<tr><td class="mdescLeft"> </td><td class="mdescRight">Construct the atom list object. <a href="group__Valist.html#g161c8bda69f6a37578011cc39b5630be"></a><br></td></tr>
<tr><td class="memItemLeft" nowrap align="right" valign="top">Vrc_Codes </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Valist.html#g3a45cdb67596f6289b4b4a27f3515af4">Valist_ctor2</a> (<a class="el" href="structsValist.html">Valist</a> *thee)</td></tr>
<tr><td class="mdescLeft"> </td><td class="mdescRight">FORTRAN stub to construct the atom list object. <a href="group__Valist.html#g3a45cdb67596f6289b4b4a27f3515af4"></a><br></td></tr>
<tr><td class="memItemLeft" nowrap align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Valist.html#gaf04de8da79be6d12a2cfe7e001b24fd">Valist_dtor</a> (<a class="el" href="structsValist.html">Valist</a> **thee)</td></tr>
<tr><td class="mdescLeft"> </td><td class="mdescRight">Destroys atom list object. <a href="group__Valist.html#gaf04de8da79be6d12a2cfe7e001b24fd"></a><br></td></tr>
<tr><td class="memItemLeft" nowrap align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Valist.html#g8b18b21fa58e5250ed419c246d22a4d0">Valist_dtor2</a> (<a class="el" href="structsValist.html">Valist</a> *thee)</td></tr>
<tr><td class="mdescLeft"> </td><td class="mdescRight">FORTRAN stub to destroy atom list object. <a href="group__Valist.html#g8b18b21fa58e5250ed419c246d22a4d0"></a><br></td></tr>
<tr><td class="memItemLeft" nowrap align="right" valign="top">Vrc_Codes </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Valist.html#g501998331453e488840902156653ef18">Valist_readPQR</a> (<a class="el" href="structsValist.html">Valist</a> *thee, <a class="el" href="structVparam.html">Vparam</a> *param, Vio *sock)</td></tr>
<tr><td class="mdescLeft"> </td><td class="mdescRight">Fill atom list with information from a PQR file. <a href="group__Valist.html#g501998331453e488840902156653ef18"></a><br></td></tr>
<tr><td class="memItemLeft" nowrap align="right" valign="top">Vrc_Codes </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Valist.html#g155ec618d8938ccf2cff609d9811b7db">Valist_readPDB</a> (<a class="el" href="structsValist.html">Valist</a> *thee, <a class="el" href="structVparam.html">Vparam</a> *param, Vio *sock)</td></tr>
<tr><td class="mdescLeft"> </td><td class="mdescRight">Fill atom list with information from a PDB file. <a href="group__Valist.html#g155ec618d8938ccf2cff609d9811b7db"></a><br></td></tr>
<tr><td class="memItemLeft" nowrap align="right" valign="top">Vrc_Codes </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Valist.html#g79d3ae98e4903139c3f0172286c48d8a">Valist_readXML</a> (<a class="el" href="structsValist.html">Valist</a> *thee, <a class="el" href="structVparam.html">Vparam</a> *param, Vio *sock)</td></tr>
<tr><td class="mdescLeft"> </td><td class="mdescRight">Fill atom list with information from an XML file. <a href="group__Valist.html#g79d3ae98e4903139c3f0172286c48d8a"></a><br></td></tr>
<tr><td class="memItemLeft" nowrap align="right" valign="top">Vrc_Codes </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Valist.html#g902e23e51a90ae7d7dec67c904e83049">Valist_getStatistics</a> (<a class="el" href="structsValist.html">Valist</a> *thee)</td></tr>
<tr><td class="mdescLeft"> </td><td class="mdescRight">Load up Valist with various statistics. <a href="group__Valist.html#g902e23e51a90ae7d7dec67c904e83049"></a><br></td></tr>
</table>
<hr><a name="_details"></a><h2>Detailed Description</h2>
Contains declarations for class Valist.
<p>
<dl class="version" compact><dt><b>Version:</b></dt><dd></dd></dl>
<dl class="rcs" compact><dt><b>Id</b></dt><dd><a class="el" href="valist_8h.html" title="Contains declarations for class Valist.">valist.h</a> 1350 2009-02-12 00:38:48Z yhuang01 </dd></dl>
<dl class="author" compact><dt><b>Author:</b></dt><dd>Nathan A. Baker</dd></dl>
<dl class="attention" compact><dt><b>Attention:</b></dt><dd><div class="fragment"><pre class="fragment">
*
* APBS -- Adaptive Poisson-Boltzmann Solver
*
* Nathan A. Baker (baker@biochem.wustl.edu)
* Dept. of Biochemistry and Molecular Biophysics
* Center for Computational Biology
* Washington University in St. Louis
*
* Additional contributing authors listed in the code documentation.
*
* Copyright (c) 2002-2009, Washington University in St. Louis.
* Portions Copyright (c) 2002-2009. Nathan A. Baker
* Portions Copyright (c) 1999-2002. The Regents of the University of California.
* Portions Copyright (c) 1995. Michael Holst
*
* All rights reserved.
*
* Redistribution and use in source and binary forms, with or without
* modification, are permitted provided that the following conditions are met:
*
* - Redistributions of source code must retain the above copyright notice, this
* list of conditions and the following disclaimer.
*
* - Redistributions in binary form must reproduce the above copyright notice,
* this list of conditions and the following disclaimer in the documentation
* and/or other materials provided with the distribution.
*
* - Neither the name of Washington University in St. Louis nor the names of its
* contributors may be used to endorse or promote products derived from this
* software without specific prior written permission.
*
* THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
* "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
* LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR
* A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR
* CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
* EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
* PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
* PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF
* LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING
* NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
* SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
*
* </pre></div> </dd></dl>
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