<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN"> <html><head><meta http-equiv="Content-Type" content="text/html;charset=UTF-8"> <title>APBS: vpee.h File Reference</title> <link href="apbs.css" rel="stylesheet" type="text/css"> <link href="tabs.css" rel="stylesheet" type="text/css"> </head><body> <!-- Generated by Doxygen 1.5.7.1 --> <div class="navigation" id="top"> <div class="tabs"> <ul> <li><a href="index.html"><span>Main Page</span></a></li> <li><a href="pages.html"><span>Related Pages</span></a></li> <li><a href="modules.html"><span>Modules</span></a></li> <li><a href="annotated.html"><span>Data Structures</span></a></li> <li class="current"><a href="files.html"><span>Files</span></a></li> </ul> </div> <div class="tabs"> <ul> <li><a href="files.html"><span>File List</span></a></li> <li><a href="globals.html"><span>Globals</span></a></li> </ul> </div> </div> <div class="contents"> <h1>vpee.h File Reference</h1>Contains declarations for class Vpee. <a href="#_details">More...</a> <p> <code>#include "maloc/maloc.h"</code><br> <code>#include "mc/mc.h"</code><br> <p> <div class="dynheader"> Include dependency graph for vpee.h:</div> <div class="dynsection"> <p><center><img src="vpee_8h__incl.png" border="0" usemap="#vpee.h_map" alt=""></center> </div> <p> <div class="dynheader"> This graph shows which files directly or indirectly include this file:</div> <div class="dynsection"> <p><center><img src="vpee_8h__dep__incl.png" border="0" usemap="#vpee.hdep_map" alt=""></center> <map name="vpee.hdep_map"> <area shape="rect" href="vpee_8c.html" title="Class Vpee methods." alt="" coords="48,82,109,109"><area shape="rect" href="apbs_8h.html" title="Top-level header for APBS." alt="" coords="133,82,194,109"><area shape="rect" href="mgparm_8c.html" title="Class MGparm methods." alt="" coords="8,157,88,184"><area shape="rect" href="main_8c.html" title="APBS "front end" program using formatted input files." alt="" coords="110,232,172,258"><area shape="rect" href="routines_8h.html" title="Header file for front end auxiliary routines." alt="" coords="162,157,245,184"><area shape="rect" href="routines_8c.html" title="Supporting routines for APBS front end." alt="" coords="226,232,306,258"></map> </div> <p> <a href="vpee_8h-source.html">Go to the source code of this file.</a><table border="0" cellpadding="0" cellspacing="0"> <tr><td></td></tr> <tr><td colspan="2"><br><h2>Data Structures</h2></td></tr> <tr><td class="memItemLeft" nowrap align="right" valign="top">struct </td><td class="memItemRight" valign="bottom"><a class="el" href="structsVpee.html">sVpee</a></td></tr> <tr><td class="mdescLeft"> </td><td class="mdescRight">Contains public data members for Vpee class/module. <a href="structsVpee.html#_details">More...</a><br></td></tr> <tr><td colspan="2"><br><h2>Typedefs</h2></td></tr> <tr><td class="memItemLeft" nowrap align="right" valign="top"><a class="anchor" name="gf98e78239b4e9f1113bead007cc98c26"></a><!-- doxytag: member="vpee.h::Vpee" ref="gf98e78239b4e9f1113bead007cc98c26" args="" --> typedef struct <a class="el" href="structsVpee.html">sVpee</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Vpee.html#gf98e78239b4e9f1113bead007cc98c26">Vpee</a></td></tr> <tr><td class="mdescLeft"> </td><td class="mdescRight">Declaration of the Vpee class as the Vpee structure. <br></td></tr> <tr><td colspan="2"><br><h2>Functions</h2></td></tr> <tr><td class="memItemLeft" nowrap align="right" valign="top"><a class="el" href="structsVpee.html">Vpee</a> * </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Vpee.html#gac9ecd9fef17be197f05e96f9aa1b8cf">Vpee_ctor</a> (Gem *gm, int localPartID, int killFlag, double killParam)</td></tr> <tr><td class="mdescLeft"> </td><td class="mdescRight">Construct the Vpee object. <a href="group__Vpee.html#gac9ecd9fef17be197f05e96f9aa1b8cf"></a><br></td></tr> <tr><td class="memItemLeft" nowrap align="right" valign="top">int </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Vpee.html#g8af91e509c5b5449571b7b8326602f79">Vpee_ctor2</a> (<a class="el" href="structsVpee.html">Vpee</a> *thee, Gem *gm, int localPartID, int killFlag, double killParam)</td></tr> <tr><td class="mdescLeft"> </td><td class="mdescRight">FORTRAN stub to construct the Vpee object. <a href="group__Vpee.html#g8af91e509c5b5449571b7b8326602f79"></a><br></td></tr> <tr><td class="memItemLeft" nowrap align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Vpee.html#g2d9caddb8eb394c871c8e9f2e43921d4">Vpee_dtor</a> (<a class="el" href="structsVpee.html">Vpee</a> **thee)</td></tr> <tr><td class="mdescLeft"> </td><td class="mdescRight">Object destructor. <a href="group__Vpee.html#g2d9caddb8eb394c871c8e9f2e43921d4"></a><br></td></tr> <tr><td class="memItemLeft" nowrap align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Vpee.html#g81bae9ed9c9b647a086f5a7bcdf28ec1">Vpee_dtor2</a> (<a class="el" href="structsVpee.html">Vpee</a> *thee)</td></tr> <tr><td class="mdescLeft"> </td><td class="mdescRight">FORTRAN stub object destructor. <a href="group__Vpee.html#g81bae9ed9c9b647a086f5a7bcdf28ec1"></a><br></td></tr> <tr><td class="memItemLeft" nowrap align="right" valign="top">int </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Vpee.html#g4148d9f1c92a50d49c15a80ae9da46f8">Vpee_markRefine</a> (<a class="el" href="structsVpee.html">Vpee</a> *thee, AM *am, int level, int akey, int rcol, double etol, int bkey)</td></tr> <tr><td class="mdescLeft"> </td><td class="mdescRight">Mark simplices for refinement based on attenuated error estimates. <a href="group__Vpee.html#g4148d9f1c92a50d49c15a80ae9da46f8"></a><br></td></tr> <tr><td class="memItemLeft" nowrap align="right" valign="top">int </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Vpee.html#gea089f2705f3e38d41ec04206a6d9738">Vpee_numSS</a> (<a class="el" href="structsVpee.html">Vpee</a> *thee)</td></tr> <tr><td class="mdescLeft"> </td><td class="mdescRight">Returns the number of simplices in the local partition. <a href="group__Vpee.html#gea089f2705f3e38d41ec04206a6d9738"></a><br></td></tr> </table> <hr><a name="_details"></a><h2>Detailed Description</h2> Contains declarations for class Vpee. <p> <dl class="version" compact><dt><b>Version:</b></dt><dd></dd></dl> <dl class="rcs" compact><dt><b>Id</b></dt><dd><a class="el" href="vpee_8h.html" title="Contains declarations for class Vpee.">vpee.h</a> 1350 2009-02-12 00:38:48Z yhuang01 </dd></dl> <dl class="author" compact><dt><b>Author:</b></dt><dd>Nathan A. Baker</dd></dl> <dl class="attention" compact><dt><b>Attention:</b></dt><dd><div class="fragment"><pre class="fragment"> * * APBS -- Adaptive Poisson-Boltzmann Solver * * Nathan A. Baker (baker@biochem.wustl.edu) * Dept. of Biochemistry and Molecular Biophysics * Center for Computational Biology * Washington University in St. Louis * * Additional contributing authors listed in the code documentation. * * Copyright (c) 2002-2009, Washington University in St. Louis. * Portions Copyright (c) 2002-2009. Nathan A. Baker * Portions Copyright (c) 1999-2002. The Regents of the University of California. * Portions Copyright (c) 1995. Michael Holst * * All rights reserved. * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions are met: * * - Redistributions of source code must retain the above copyright notice, this * list of conditions and the following disclaimer. * * - Redistributions in binary form must reproduce the above copyright notice, * this list of conditions and the following disclaimer in the documentation * and/or other materials provided with the distribution. * * - Neither the name of Washington University in St. Louis nor the names of its * contributors may be used to endorse or promote products derived from this * software without specific prior written permission. * * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS * "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT * LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR * A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR * CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, * EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, * PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR * PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF * LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING * NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS * SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. * * </pre></div> </dd></dl> </div> <hr size="1"><address style="text-align: right;"><small>Generated on Thu Feb 12 06:23:50 2009 for APBS by <a href="http://www.doxygen.org/index.html"> <img src="doxygen.png" alt="doxygen" align="middle" border="0"></a> 1.5.7.1 </small></address> </body> </html>