%global packname msm Name: R-%{packname} Version: 1.1 Release: 1%{?dist} Source0: ftp://cran.r-project.org/pub/R/contrib/main/%{packname}_%{version}.tar.gz License: GPLv2+ URL: http://cran.r-project.org/web/packages/msm/ Group: Applications/Engineering Summary: Multi-state Markov and hidden Markov models in continuous time BuildRequires: R-devel, tetex-latex, R-mvtnorm, R-survival BuildRoot: %{_tmppath}/%{name}-%{version}-%{release}-root-%(%{__id_u} -n) Requires: R-core, R-mvtnorm, R-survival %description Functions for fitting general continuous-time Markov and hidden Markov multi-state models to longitudinal data. Both Markov transition rates and the hidden Markov output process can be modelled in terms of covariates. A variety of observation schemes are supported, including processes observed at arbitrary times, completely-observed processes, and censored states. %prep %setup -q -c -n %{packname} # Fix some permissions and formats # find . -type f -perm 755 -exec chmod 644 {} \; find . -type f -name '*.[hc]' -exec chmod 644 {} \; # Fix the encoding of the NEWS file chmod 644 %{packname}/inst/NEWS iconv -f ISO88591 -t UTF8 -o NEWS %{packname}/inst/NEWS mv -f NEWS %{packname}/inst %build %install rm -rf $RPM_BUILD_ROOT # Specific installation procedure for R mkdir -p $RPM_BUILD_ROOT%{_libdir}/R/library %{_bindir}/R CMD INSTALL -l $RPM_BUILD_ROOT%{_libdir}/R/library %{packname} # Remove the temporary object files test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) # Remove the generic cascading style sheet for R rm -rf $RPM_BUILD_ROOT%{_libdir}/R/library/R.css %check # check needs mstate and diagram # %{_bindir}/R CMD check %{packname} %clean rm -rf $RPM_BUILD_ROOT %files %defattr(-, root, root, -) %dir %{_libdir}/R/library/%{packname} %doc %{_libdir}/R/library/%{packname}/CITATION %doc %{_libdir}/R/library/%{packname}/data %doc %{_libdir}/R/library/%{packname}/doc %doc %{_libdir}/R/library/%{packname}/html %doc %{_libdir}/R/library/%{packname}/DESCRIPTION %doc %{_libdir}/R/library/%{packname}/NEWS %{_libdir}/R/library/%{packname}/INDEX %{_libdir}/R/library/%{packname}/NAMESPACE %{_libdir}/R/library/%{packname}/Meta %{_libdir}/R/library/%{packname}/R %{_libdir}/R/library/%{packname}/help %{_libdir}/R/library/%{packname}/libs/%{packname}.so %changelog * Tue Nov 8 2011 Tom Callaway <spot@fedoraproject.org> - 1.1-1 - update to 1.1 * Mon Feb 07 2011 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 0.9.5-3 - Rebuilt for https://fedoraproject.org/wiki/Fedora_15_Mass_Rebuild * Thu Jan 21 2010 Tom "spot" Callaway <tcallawa@redhat.com> - 0.9.5-2 - fix tag mistake * Thu Jan 21 2010 Tom "spot" Callaway <tcallawa@redhat.com> - 0.9.5-1 - update to 0.9.5 - cleanup package to fix FTBFS * Fri Jul 24 2009 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 0.9.1-3 - Rebuilt for https://fedoraproject.org/wiki/Fedora_12_Mass_Rebuild * Tue Jul 14 2009 Denis Arnaud <denis.arnaud_fedora@m4x.org> 0.9.1-2 - Suppressed the unused definition of the packrel variable * Fri Jun 12 2009 Denis Arnaud <denis.arnaud_fedora@m4x.org> 0.9.1-1 - Integrated the new upstream (0.9.1) version * Sat Jun 06 2009 Denis Arnaud <denis.arnaud_fedora@m4x.org> 0.8.2-2 - Altered the license so as to reflect upstream, after clarification with them * Sun May 03 2009 Denis Arnaud <denis.arnaud_fedora@m4x.org> 0.8.2-1 - Initial package creation