- Name: fastx_toolkit
- Version: 0.0.13
- Release: 4.fc16
- Epoch:
- Group: Applications/Engineering
- License: AGPLv3+
- Url: http://hannonlab.cshl.edu/fastx_toolkit/index.html
- Summary: Tools to process short-reads FASTA/FASTQ files
- Architecture: i686
- Size: 342322
- Distribution: Fedora Project
- Vendor: Fedora Project
- Packager: Fedora Project
Description:
The FASTX-Toolkit is a collection of command line tools for
Short-Reads FASTA/FASTQ files preprocessing.
Next-Generation sequencing machines usually produce FASTA or FASTQ
files, containing multiple short-reads sequences (possibly with
quality information).
The main processing of such FASTA/FASTQ files is mapping (aka
aligning) the sequences to reference genomes or other databases using
specialized programs. Example of such mapping programs are: Blat,
SHRiMP, LastZ, MAQ and many many others.
However, It is sometimes more productive to preprocess the FASTA/FASTQ
files before mapping the sequences to the genome - manipulating the
sequences to produce better mapping results.
The FASTX-Toolkit tools perform some of these preprocessing tasks.
- OptFlags: -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables
- Cookie:
- Buildhost: x86-09.phx2.fedoraproject.org
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