Sophie

Sophie

distrib > Fedora > 18 > i386 > by-pkgid > 0c50510da6afb7d0650c0f7664a377b3 > files > 89

towhee-examples-7.0.4-2.fc18.noarch.rpm

inputformat
'Towhee'
ensemble
'nvt'
temperature
300.0d0
nmolty
2
nmolectyp
256 256
numboxes
1
stepstyle
'moves'
nstep
0
printfreq 
1   
blocksize 
2
moviefreq
100000
backupfreq  
1000
runoutput
'full'
pdb_output_freq
100000
pressurefreq
20
trmaxdispfreq
1000
volmaxdispfreq
1000
potentialstyle
'internal'
ffnumber
2
ff_filename
/towheebase/ForceFields/towhee_ff_Aqvist
/towheebase/ForceFields/towhee_ff_LGM
classical_potential
'Lennard-Jones'       
classical_mixrule
'Lorentz-Berthelot'
lshift
.false.
ltailc
.true.
rmin  
1.0d0 
rcut  
10.0d0
rcutin 
10.0d0 
electrostatic_form
'coulomb'
coulombstyle
'ewald_fixed_kmax'
kalp 
5.6d0
kmax
5
dielect
1.0d0
linit   
.false. 
initboxtype
'dimensions'
initstyle
'coords' 'coords'
initlattice
'none' 'none'
initmol
256 256
inix iniy iniz
8    8    8
hmatrix
26.3424d0 0.0d0 0.0d0
0.0d0 26.3424d0 0.0d0
0.0d0 0.0d0 26.3424d0
pm1boxcbswap
0.0d0
          pm1cbswmt
          0.5d0 1.0d0
pmavb1    
0.0d0     
          pmavb1in
          0.5d0
          pmavb1mt
          0.5d0 1.0d0
          pmavb1ct
          0.5d0 1.0d0
          0.5d0 1.0d0
          avb1rad
          5.0d0 5.0d0
pmavb2
0.0d0     
          pmavb2in
          0.5d0
          pmavb2mt
          0.5d0 1.0d0
          pmavb2ct
          0.5d0 1.0d0
          0.5d0 1.0d0
          avb2rad
          5.0d0 5.0d0
pmavb3
0.0d0     
          pmavb3mt
          0.5d0 1.0d0
          pmavb3ct
          0.5d0 1.0d0
          0.5d0 1.0d0
          avb3rad
          5.0d0 5.0d0
pmcb
0.4d0
          pmcbmt
          0.5d0 1.0d0 
          pmall
          0.0d0 0.0d0
pmback
0.0d0
          pmbkmt
          0.5d0 1.0d0
pmpivot
0.0d0
          pmpivmt
          0.5d0 1.0d0
pmconrot
0.0d0
          pmcrmt
          0.0d0 1.0d0
pmcrback
0.0d0
          pmcrbmt
          0.0d0 1.0d0
pmplane
0.0d0
          pmplanebox
          1.0d0
          planewidth
          1.0d0
pmrow
0.0d0
          pmrowbox
          1.0d0
          rowwidth
          1.0d0
pmtraat
0.0d0
          pmtamt          
          0.5d0 1.0d0      	
          rmtraa
          0.5d0 
          tatraa
          0.5d0
pmtracm
0.7d0
          pmtcmt          
          0.5d0 1.0d0      	
          rmtrac
          0.5d0 
          tatrac
          0.5d0
pmrotate
1.0d0
          pmromt  
          0.5d0 1.0d0
          rmrot
          0.05d0
          tarot
          0.5d0
#aqvist Na+
input_style
'basic connectivity map'
nunit
1
nmaxcbmc
1
lpdbnames
F
forcefield
'Aqvist'
charge_assignment
'manual'
unit ntype qqatom
1    'Na+' 1.0d0
vibration
0
improper torsion
0
#lgm Cl-
input_style
'basic connectivity map'
nunit
1
nmaxcbmc
1
lpdbnames
F
forcefield
'LGM'
charge_assignment
'manual'
unit ntype qqatom
1    'Cl-' -1.0d0
vibration
0
improper torsion
0