%global packname GenomicFeatures %global Rvers 3.0.0 Name: R-%{packname} Version: 1.12.0 Release: 1%{dist} Summary: Tools for making and manipulating transcript centric annotations Group: Applications/Engineering License: Artistic 2.0 URL: http://bioconductor.org/packages/2.9/bioc/html/GenomicFeatures.html Source0: http://bioconductor.org/packages/2.9/bioc/src/contrib/%{packname}_%{version}.tar.gz BuildRoot: %{_tmppath}/%{name}-%{version}-%{release}-root-%(%{__id_u} -n) BuildArch: noarch BuildRequires: R-devel >= %{Rvers} tex(latex) R-IRanges R-GenomicRanges R-AnnotationDbi BuildRequires: R-DBI R-RSQLite R-Biostrings R-BSgenome R-Biobase R-utils BuildRequires: R-RCurl R-rtracklayer R-biomaRt Requires: R-core >= %{Rvers} R-IRanges R-GenomicRanges R-AnnotationDbi Requires: R-DBI R-RSQLite R-Biostrings R-BSgenome R-Biobase R-utils Requires: R-RCurl R-rtracklayer R-biomaRt %description A set of tools and methods for making and manipulating transcript centric annotations. With these tools the user can easily download the genomic locations of the transcripts, exons and cds of a given organism, from either the UCSC Genome Browser or a BioMart database (more sources will be supported in the future). This information is then stored in a local database that keeps track of the relationship between transcripts, exons, cds and genes. Flexible methods are provided for extracting the desired features in a convenient format. %prep %setup -q -c -n %{packname} %build %install rm -rf %{buildroot} # noarch -> Architecture independent package mkdir -p %{buildroot}%{_datadir}/R/library R CMD INSTALL %{packname} -l %{buildroot}%{_datadir}/R/library # Clean up in advance of check test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) rm -rf %{buildroot}%{_datadir}/R/library/R.css %check # Missing Suggests # %%{_bindir}/R CMD check %%{packname} %clean rm -rf %{buildroot} %files %defattr(-, root, root, -) %doc %{_datadir}/R/library/GenomicFeatures/html %doc %{_datadir}/R/library/GenomicFeatures/DESCRIPTION %doc %{_datadir}/R/library/GenomicFeatures/NEWS %{_datadir}/R/library/GenomicFeatures/doc/ %{_datadir}/R/library/GenomicFeatures/extdata/ %{_datadir}/R/library/GenomicFeatures/script/ %{_datadir}/R/library/GenomicFeatures/txdb-template/ %{_datadir}/R/library/GenomicFeatures/unitTests/ %{_datadir}/R/library/GenomicFeatures/NAMESPACE %{_datadir}/R/library/GenomicFeatures/Meta %{_datadir}/R/library/GenomicFeatures/R %{_datadir}/R/library/GenomicFeatures/INDEX %{_datadir}/R/library/GenomicFeatures/help %changelog * Sun Apr 07 2013 pingou <pingou@pingoured.fr> 1.12.0-1 - Update to version 1.12.0 * Thu Feb 28 2013 pingou <pingou@pingoured.fr> 1.10.2-1 - Update to version 1.10.2 * Wed Feb 13 2013 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.10.1-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_19_Mass_Rebuild * Tue Nov 27 2012 pingou <pingou@pingoured.fr> 1.10.1-1 - Update to version 1.10.1 * Wed Jul 18 2012 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.6.1-3 - Rebuilt for https://fedoraproject.org/wiki/Fedora_18_Mass_Rebuild * Thu Jan 12 2012 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.6.1-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_17_Mass_Rebuild * Wed Nov 9 2011 Tom Callaway <spot@fedoraproject.org> - 1.6.1-1 - update to 1.6.1 * Mon Feb 07 2011 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 0.0.9-3 - Rebuilt for https://fedoraproject.org/wiki/Fedora_15_Mass_Rebuild * Sun Jun 27 2010 pingou <pingou@pingoured.fr> 0.0.9-2 - Fix ending of description (missing an etc) - Add R-IRanges as R and BR * Sat Jun 05 2010 pingou <pingou@pingoured.fr> 0.0.9-1 - initial package for Fedora