Return-Path: kent@soe.ucsc.edu Received: from zmta02.collab.prod.int.phx2.redhat.com (LHLO zmta02.collab.prod.int.phx2.redhat.com) (10.5.5.32) by mail04.corp.redhat.com with LMTP; Sat, 12 Nov 2011 13:32:07 -0500 (EST) Received: from localhost (localhost.localdomain [127.0.0.1]) by zmta02.collab.prod.int.phx2.redhat.com (Postfix) with ESMTP id BE818129759 for <tcallawa@redhat.com>; Sat, 12 Nov 2011 13:32:07 -0500 (EST) Received: from zmta02.collab.prod.int.phx2.redhat.com ([127.0.0.1]) by localhost (zmta02.collab.prod.int.phx2.redhat.com [127.0.0.1]) (amavisd-new, port 10024) with ESMTP id G3DEQrVBnqVd for <tcallawa@redhat.com>; Sat, 12 Nov 2011 13:32:07 -0500 (EST) Received: from int-mx02.intmail.prod.int.phx2.redhat.com (int-mx02.intmail.prod.int.phx2.redhat.com [10.5.11.12]) by zmta02.collab.prod.int.phx2.redhat.com (Postfix) with ESMTP id AB919129731 for <tcallawa@mail.corp.redhat.com>; Sat, 12 Nov 2011 13:32:07 -0500 (EST) Received: from mx1.redhat.com (ext-mx13.extmail.prod.ext.phx2.redhat.com [10.5.110.18]) by int-mx02.intmail.prod.int.phx2.redhat.com (8.13.8/8.13.8) with ESMTP id pACIW7CM013442 for <tcallawa@redhat.com>; Sat, 12 Nov 2011 13:32:07 -0500 Received: from services.cse.ucsc.edu (services.cse.ucsc.edu [128.114.48.10]) by mx1.redhat.com (8.14.4/8.14.4) with ESMTP id pACIW6Xm015546 for <tcallawa@redhat.com>; Sat, 12 Nov 2011 13:32:07 -0500 Received: from [192.168.0.101] (c-24-130-128-69.hsd1.ca.comcast.net [24.130.128.69]) (authenticated bits=0) by services.cse.ucsc.edu (8.13.6/8.13.6) with ESMTP id pACIW6da015787 (version=TLSv1/SSLv3 cipher=AES128-SHA bits=128 verify=NO) for <tcallawa@redhat.com>; Sat, 12 Nov 2011 10:32:06 -0800 (PST) Content-Type: text/plain; charset=us-ascii Mime-Version: 1.0 (Apple Message framework v1084) Subject: Re: license for code in rtracklayer From: Jim Kent <kent@soe.ucsc.edu> In-Reply-To: <4EBDDC5B.2080603@redhat.com> Date: Sat, 12 Nov 2011 10:32:06 -0800 Content-Transfer-Encoding: quoted-printable Message-Id: <0490A007-6BAF-4B4E-970F-80E88CA9D24E@soe.ucsc.edu> References: <4EBD6A41.5070209@redhat.com> <AA059DA7-4D44-4A57-B0EC-198A84F179FF@soe.ucsc.edu> <4EBDDC5B.2080603@redhat.com> To: Tom Callaway <tcallawa@redhat.com> X-RedHat-Spam-Score: -1.201 (RP_MATCHES_RCVD) X-Scanned-By: MIMEDefang 2.67 on 10.5.11.12 X-Scanned-By: MIMEDefang 2.68 on 10.5.110.18 ps - if you want to stick the original BSD on to simplify your life = that's ok with me, but we don't actually require attribution, or the disclaimer. On Nov 11, 2011, at 6:39 PM, Tom Callaway wrote: > On 11/11/2011 09:14 PM, Jim Kent wrote: >> Could you give me the name of the source code modules you are = concerned about? >=20 > Within the rtracklayer code, there is a directory under src labeled > "ucsc". The following files have your copyright statement: >=20 > bits.c > bits.h > cheapcgi.h > common.c > common.h > dlist.c > dlist.h > dnaseq.c > dnaseq.h > dnautil.c > dnautil.h > dystring.c > dystring.h > errabort.c > errabort.h > hash.c > hash.h > hmmstats.c > hmmstats.h > htmshell.h > linefile.c > linefile.h > localmem.c > localmem.h > memalloc.c > memalloc.h > net.c > net.h > obscure.c > obscure.h > options.h > osunix.c > oswin9x.c > portable.h > portimpl.h > sig.h > sqlNum.c > sqlNum.h > wildcmp.c >=20 > The rtracklayer source can be found here: > = http://www.bioconductor.org/packages/release/bioc/html/rtracklayer.html >=20 > Thanks, >=20 > ~tom >=20 > =3D=3D > Fedora Project