<html> <head> <title>MCCCS Towhee (Morrow2002)</title> </head> <body bgcolor="#FFFFFF" text="#000000"> <table width="675" border="0" cellspacing="0" cellpadding="0" height="590"> <tr> <td colspan="2" height="29"> <div align="center"> <font size="5"> <b><font face="Arial, Helvetica, sans-serif"><a name="top"></a>MCCCS Towhee (Morrow and Maginn 2002)</font></b> </font> </div> </td> </tr> <A href="http://sourceforge.net"> <IMG src="http://sourceforge.net/sflogo.php?group_id=87039&type=5" width="210" height="62" border="0" alt="SourceForge.net Logo" align="right"/> </A> <tr> <td width="18" height="371" valign="top"> <p> </p> <p> </p> </td> <td width="697" valign="top"> <b>Overview</b> <ul> This section covers the Morrow and Maginn 2002 (Morrow2002) force field as it is implemented into the towhee_ff_Morrow2002 file in the ForceFields directory. This force field was designed for an ionic liquid of 1-<i>n</i>-butyl-3-methylimidazolium [bmim] hexafluorophosphate [PF<sub>6</sub>]. Note that this is a Lennard-Jones force field that uses the 'Lorentz-Berthelot' mixing rules. Any discrepencies (especially typos) from the published values are the sole responsibility of Marcus G. Martin, and I welcome feedback on how this implementation compares with other programs. </ul> <b>References for Morrow and Maginn 2002</b> <ul> This forcefield is described in a single paper and an erratum. <ul> <li><a href="../references.html#morrow_maginn_2002">Morrow and Maginn 2002</a></li> <li><a href="../references.html#morrow_maginn_2003">Morrow and Maginn 2003</a> erratum</li> </ul> </ul> <b>Typos and comments for Morrow and Maginn 2002</b> <ul> <li>The parameters implemented for this force field are from the erratum.</li> <li>All bonds involving hydrogen were held rigid in their work using SHAKE, and are therefore implemented here as rigid bonds.</li> <li>Full Lennard-Jones interactions are used for 1-4 interactions, while the Coulombic 1-4 terms are scaled by 1/2 [personal communication between E.J. Maginn and M.G. Martin 04-21-2006]. </li> <li>The second to last angle term in Table 2 of the erratum should read N-C<sub>7</sub>-H<sub>7,8</sub> instead of N-C<sub>7</sub>-H<sub>8,9</sub> [personal communication between E.J. Maginn and M.G. Martin 04-21-2006]. </li> <li>No value for the H-C8-C9-H dihedral was specified in their papers. It has been implemented here using the published H-C7-C8-H term. </li> <li>The authors claim that the charge on PF<sub>6</sub> adds up to -0.904, and the charge on bmim adds up to 0.904. However, the partial charges they list for PF<sub>6</sub> using assymmetric charge assignments adds up to -0.903, which does not properly balance the charge of the bmin. I have adjusted this by utlizing the stated charges on the Fluorines, and placing the remainder of the charge on the Phosphorous. </ul> <b>Morrow and Maginn 2002 in Towhee</b> <ul> The official force field name for Morrow and Maginn 2002 in Towhee is 'Morrow2002'. Here is the list of atom names for use in the towhee_input file, along with a brief description. These names correspond to those used in <a href="../references.html#morrow_maginn_2002">Morrow and Maginn 2002</a>. Please note that the capitalization and spacing pattern is important and must be followed exactly as listed here. <ul> <li><b>'N1'</b> : Ring Nitrogen bonded to C2, C5, and C7 in bmim</li> <li><b>'C2'</b> : Ring Carbon bonded to N1, N3, and H1 in bmim</li> <li><b>'N3'</b> : Ring Nitrogen bonded to C2, C4, and C6 in bmim</li> <li><b>'C4'</b> : Ring Carbon bonded to N3, C5, and H2 in bmim</li> <li><b>'C5'</b> : Ring Carbon bonded to N1, C4, and H3 in bmim</li> <li><b>'C6'</b> : methyl Carbon bonded to N3, H4, H5, and H6 in bmim</li> <li><b>'C7'</b> : methylene Carbon bonded to N1, C8, H7, and H8 in bmim</li> <li><b>'C8'</b> : methylene Carbon bonded to C7, C9, H9, and H10 in bmim</li> <li><b>'C9'</b> : methylene Carbon bonded to C8, C10, H11, and H12 in bmim</li> <li><b>'C10'</b> : methyl Carbon bonded to C9, H13, H14, and H15 in bmim</li> <li><b>'H1'</b> : Hydrogen bonded to C2 in bmim</li> <li><b>'H2'</b> : Hydrogen bonded to C4 in bmim</li> <li><b>'H3'</b> : Hydrogen bonded to C5 in bmim</li> <li><b>'H4'</b> : Hydrogen bonded to C6 in bmim</li> <li><b>'H5'</b> : Hydrogen bonded to C6 in bmim</li> <li><b>'H6'</b> : Hydrogen bonded to C6 in bmim</li> <li><b>'H7'</b> : Hydrogen bonded to C7 in bmim</li> <li><b>'H8'</b> : Hydrogen bonded to C7 in bmim</li> <li><b>'H9'</b> : Hydrogen bonded to C8 in bmim</li> <li><b>'H10'</b> : Hydrogen bonded to C8 in bmim</li> <li><b>'H11'</b> : Hydrogen bonded to C9 in bmim</li> <li><b>'H12'</b> : Hydrogen bonded to C9 in bmim</li> <li><b>'H13'</b> : Hydrogen bonded to C10 in bmim</li> <li><b>'H14'</b> : Hydrogen bonded to C10 in bmim</li> <li><b>'H15'</b> : Hydrogen bonded to C10 in bmim</li> <li><b>'P'</b> : P in hexafluorophosphate</li> <li><b>'F'</b> : generic F in hexafluorophosphate if you want to use the symmetric charge distribution version of that molecule. </li> <li><b>'F1'</b> : specific F in hexafluorophosphate if you want to use the assymmetric charge distribution version of that molecule. </li> <li><b>'F2'</b> : specific F in hexafluorophosphate if you want to use the assymmetric charge distribution version of that molecule. </li> <li><b>'F3'</b> : specific F in hexafluorophosphate if you want to use the assymmetric charge distribution version of that molecule. </li> <li><b>'F4'</b> : specific F in hexafluorophosphate if you want to use the assymmetric charge distribution version of that molecule. </li> <li><b>'F5'</b> : specific F in hexafluorophosphate if you want to use the assymmetric charge distribution version of that molecule. </li> <li><b>'F6'</b> : specific F in hexafluorophosphate if you want to use the assymmetric charge distribution version of that molecule. </li> </ul> </ul> <b>Coulombic interactions</b> <ul> This force field uses point charges and has been set up to assign the point charges using the bond increment method. The charges for bmim are assigned according to Table 1 of <a href="../references.html#morrow_maginn_2002">Morrow and Maginn 2002</a>. There are two possible charge distributions for hexafluorophosphate. If you specify each of the Fluorine atoms (F1, ..., F6) then the charges are assigned according to Table 1 of <a href="../references.html#morrow_maginn_2002">Morrow and Maginn 2002</a>, with the exception that the P charge is 1.457 instead of the stated 1.478 (see the notes above). If you specify a generic Fluorine atom (F), then the charge on the Phosphorous is the same as in Table 1, while the Fluorines are assigned symmetric charges in order to achieve a total molecule charge of -0.904. </ul> <a href="../towhee_capabilities.html">Return to the Towhee Capabilities web page</a> <p> </p> </td> </tr> </table> <hr width="715" align="left"> <i><font size="2">Send comments to:</font></i> <font size="2"> <a href="mailto:marcus_martin@users.sourceforge.net">Marcus G. Martin</a><br> <i>Last updated:</i> <!-- #BeginDate format:Am1 -->April 24, 2006<!-- #EndDate --> </font> <br> </body> </html>