Sophie

Sophie

distrib > Fedora > 20 > x86_64 > by-pkgid > 29c20b29a62bbdf39f70400098af0a5a > files > 441

psi4-doc-4.0-0.11.0c7ea92git.fc20.noarch.rpm




<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
  "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">


<html xmlns="http://www.w3.org/1999/xhtml">
  <head>
    <meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
    
    <title>p4util.optproc &mdash; PSI4 [] documentation</title>
    
    <link rel="stylesheet" href="../../_static/psi4.css" type="text/css" />
    <link rel="stylesheet" href="../../_static/pygments.css" type="text/css" />
    <link rel="stylesheet" href="../../" type="text/css" />
    
    <script type="text/javascript">
      var DOCUMENTATION_OPTIONS = {
        URL_ROOT:    '../../',
        VERSION:     '',
        COLLAPSE_INDEX: false,
        FILE_SUFFIX: '.html',
        HAS_SOURCE:  true
      };
    </script>
    <script type="text/javascript" src="../../_static/jquery.js"></script>
    <script type="text/javascript" src="../../_static/underscore.js"></script>
    <script type="text/javascript" src="../../_static/doctools.js"></script>
    <script type="text/javascript" src="../../_static/jquery.cookie.js"></script>
    <script type="text/javascript" src="../../_static/toggle_sections.js"></script>
    <script type="text/javascript" src="../../_static/toggle_sidebar.js"></script>
    <script type="text/javascript" src="../../_static/toggle_codeprompt.js"></script>
    <link rel="top" title="PSI4 [] documentation" href="../../index.html" />
    <link rel="up" title="Module code" href="../index.html" /> 
  </head>
  <body>
    <div class="relbar-top">
        
    <div class="related">
      <h3>Navigation</h3>
      <ul>
        <li class="right" style="margin-right: 10px">
          <a href="../../genindex.html" title="General Index"
             accesskey="I">index</a></li>
        <li class="right" >
          <a href="../../py-modindex.html" title="Python Module Index"
             >modules</a> &nbsp; &nbsp;</li>
        <li class="right" >
          <a href="../../contents.html" title="Table Of Contents"
             accesskey="C">toc</a> &nbsp; &nbsp;</li>
    <li><a href="../../index.html">PSI4 []</a> &raquo; </li>

          <li><a href="../index.html" accesskey="U">Module code</a> &raquo;</li> 
      </ul>
    </div>
    </div>
  

    <div class="document">
      <div class="documentwrapper">
        <div class="bodywrapper">
          <div class="body">
            
  <h1>Source code for p4util.optproc</h1><div class="highlight"><pre>
<span class="c">#</span>
<span class="c">#@BEGIN LICENSE</span>
<span class="c">#</span>
<span class="c"># PSI4: an ab initio quantum chemistry software package</span>
<span class="c">#</span>
<span class="c"># This program is free software; you can redistribute it and/or modify</span>
<span class="c"># it under the terms of the GNU General Public License as published by</span>
<span class="c"># the Free Software Foundation; either version 2 of the License, or</span>
<span class="c"># (at your option) any later version.</span>
<span class="c">#</span>
<span class="c"># This program is distributed in the hope that it will be useful,</span>
<span class="c"># but WITHOUT ANY WARRANTY; without even the implied warranty of</span>
<span class="c"># MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the</span>
<span class="c"># GNU General Public License for more details.</span>
<span class="c">#</span>
<span class="c"># You should have received a copy of the GNU General Public License along</span>
<span class="c"># with this program; if not, write to the Free Software Foundation, Inc.,</span>
<span class="c"># 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.</span>
<span class="c">#</span>
<span class="c">#@END LICENSE</span>
<span class="c">#</span>

<span class="sd">r&quot;&quot;&quot;Module to provide mechanism to store and restore option states in driver.</span>

<span class="sd">&quot;&quot;&quot;</span>
<span class="kn">import</span> <span class="nn">sys</span>
<span class="c">#CUimport psi4</span>
<span class="kn">from</span> <span class="nn">p4xcpt</span> <span class="kn">import</span> <span class="o">*</span> <span class="c">#CU</span>


<div class="viewcode-block" id="OptionState"><a class="viewcode-back" href="../../autodoc_driver.html#p4util.optproc.OptionState">[docs]</a><span class="k">class</span> <span class="nc">OptionState</span><span class="p">(</span><span class="nb">object</span><span class="p">):</span>
    <span class="sd">&quot;&quot;&quot;Class to store the state of a single *option*. If *module* given, the *option*</span>
<span class="sd">    value and has_changed value is stored for global, local to *module*, and used by</span>
<span class="sd">    *module* scopes; otherwise (used for BASIS keywords), only global scope is stored.</span>
<span class="sd">    Class can store, print, and restore option values. ::</span>

<span class="sd">        &gt;&gt;&gt; OptionState(&#39;SCF_TYPE&#39;, &#39;SCF&#39;)</span>

<span class="sd">        &gt;&gt;&gt; print(OptionState(&#39;DF_BASIS_MP2&#39;))</span>

<span class="sd">    &quot;&quot;&quot;</span>
    <span class="k">def</span> <span class="nf">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">option</span><span class="p">,</span> <span class="n">module</span><span class="o">=</span><span class="bp">None</span><span class="p">):</span>
        <span class="bp">self</span><span class="o">.</span><span class="n">option</span> <span class="o">=</span> <span class="n">option</span><span class="o">.</span><span class="n">upper</span><span class="p">()</span>
        <span class="k">if</span> <span class="n">module</span><span class="p">:</span>
            <span class="bp">self</span><span class="o">.</span><span class="n">module</span> <span class="o">=</span> <span class="n">module</span><span class="o">.</span><span class="n">upper</span><span class="p">()</span>
        <span class="k">else</span><span class="p">:</span>
            <span class="bp">self</span><span class="o">.</span><span class="n">module</span> <span class="o">=</span> <span class="bp">None</span>

        <span class="bp">self</span><span class="o">.</span><span class="n">value_global</span> <span class="o">=</span> <span class="n">psi4</span><span class="o">.</span><span class="n">get_global_option</span><span class="p">(</span><span class="n">option</span><span class="p">)</span>
        <span class="bp">self</span><span class="o">.</span><span class="n">haschanged_global</span> <span class="o">=</span> <span class="n">psi4</span><span class="o">.</span><span class="n">has_global_option_changed</span><span class="p">(</span><span class="n">option</span><span class="p">)</span>
        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">module</span><span class="p">:</span>
            <span class="bp">self</span><span class="o">.</span><span class="n">value_local</span> <span class="o">=</span> <span class="n">psi4</span><span class="o">.</span><span class="n">get_local_option</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">module</span><span class="p">,</span> <span class="n">option</span><span class="p">)</span>
            <span class="bp">self</span><span class="o">.</span><span class="n">haschanged_local</span> <span class="o">=</span> <span class="n">psi4</span><span class="o">.</span><span class="n">has_local_option_changed</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">module</span><span class="p">,</span> <span class="n">option</span><span class="p">)</span>
            <span class="bp">self</span><span class="o">.</span><span class="n">value_used</span> <span class="o">=</span> <span class="n">psi4</span><span class="o">.</span><span class="n">get_option</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">module</span><span class="p">,</span> <span class="n">option</span><span class="p">)</span>
            <span class="bp">self</span><span class="o">.</span><span class="n">haschanged_used</span> <span class="o">=</span> <span class="n">psi4</span><span class="o">.</span><span class="n">has_option_changed</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">module</span><span class="p">,</span> <span class="n">option</span><span class="p">)</span>
        <span class="k">else</span><span class="p">:</span>
            <span class="bp">self</span><span class="o">.</span><span class="n">value_local</span> <span class="o">=</span> <span class="bp">None</span>
            <span class="bp">self</span><span class="o">.</span><span class="n">haschanged_local</span> <span class="o">=</span> <span class="bp">None</span>
            <span class="bp">self</span><span class="o">.</span><span class="n">value_used</span> <span class="o">=</span> <span class="bp">None</span>
            <span class="bp">self</span><span class="o">.</span><span class="n">haschanged_used</span> <span class="o">=</span> <span class="bp">None</span>

    <span class="k">def</span> <span class="nf">__str__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
        <span class="n">text</span> <span class="o">=</span> <span class="s">&#39;&#39;</span>
        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">module</span><span class="p">:</span>
            <span class="n">text</span> <span class="o">+=</span> <span class="s">&quot;&quot;&quot;  ==&gt; </span><span class="si">%s</span><span class="s"> Option in Module </span><span class="si">%s</span><span class="s"> &lt;==</span><span class="se">\n\n</span><span class="s">&quot;&quot;&quot;</span> <span class="o">%</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">option</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">module</span><span class="p">)</span>
            <span class="n">text</span> <span class="o">+=</span> <span class="s">&quot;&quot;&quot;  Global (has changed?) value: </span><span class="si">%7s</span><span class="s"> </span><span class="si">%s</span><span class="se">\n</span><span class="s">&quot;&quot;&quot;</span> <span class="o">%</span> <span class="p">(</span><span class="s">&#39;(&#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">haschanged_global</span><span class="p">)</span> <span class="o">+</span> <span class="s">&#39;)&#39;</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">value_global</span><span class="p">)</span>
            <span class="n">text</span> <span class="o">+=</span> <span class="s">&quot;&quot;&quot;  Local (has changed?) value:  </span><span class="si">%7s</span><span class="s"> </span><span class="si">%s</span><span class="se">\n</span><span class="s">&quot;&quot;&quot;</span> <span class="o">%</span> <span class="p">(</span><span class="s">&#39;(&#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">haschanged_local</span><span class="p">)</span> <span class="o">+</span> <span class="s">&#39;)&#39;</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">value_local</span><span class="p">)</span>
            <span class="n">text</span> <span class="o">+=</span> <span class="s">&quot;&quot;&quot;  Used (has changed?) value:   </span><span class="si">%7s</span><span class="s"> </span><span class="si">%s</span><span class="se">\n</span><span class="s">&quot;&quot;&quot;</span> <span class="o">%</span> <span class="p">(</span><span class="s">&#39;(&#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">haschanged_used</span><span class="p">)</span> <span class="o">+</span> <span class="s">&#39;)&#39;</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">value_used</span><span class="p">)</span>
        <span class="k">else</span><span class="p">:</span>
            <span class="n">text</span> <span class="o">+=</span> <span class="s">&quot;&quot;&quot;  ==&gt; </span><span class="si">%s</span><span class="s"> Option in Global Scope &lt;==</span><span class="se">\n\n</span><span class="s">&quot;&quot;&quot;</span> <span class="o">%</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">option</span><span class="p">)</span>
            <span class="n">text</span> <span class="o">+=</span> <span class="s">&quot;&quot;&quot;  Global (has changed?) value: </span><span class="si">%7s</span><span class="s"> </span><span class="si">%s</span><span class="se">\n</span><span class="s">&quot;&quot;&quot;</span> <span class="o">%</span> <span class="p">(</span><span class="s">&#39;(&#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">haschanged_global</span><span class="p">)</span> <span class="o">+</span> <span class="s">&#39;)&#39;</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">value_global</span><span class="p">)</span>
        <span class="n">text</span> <span class="o">+=</span> <span class="s">&quot;&quot;&quot;</span><span class="se">\n</span><span class="s">&quot;&quot;&quot;</span>
        <span class="k">return</span> <span class="n">text</span>

<div class="viewcode-block" id="OptionState.restore"><a class="viewcode-back" href="../../autodoc_driver.html#p4util.optproc.OptionState.restore">[docs]</a>    <span class="k">def</span> <span class="nf">restore</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
        <span class="n">psi4</span><span class="o">.</span><span class="n">set_global_option</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">option</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">value_global</span><span class="p">)</span>
        <span class="k">if</span> <span class="ow">not</span> <span class="bp">self</span><span class="o">.</span><span class="n">haschanged_global</span><span class="p">:</span>
            <span class="n">psi4</span><span class="o">.</span><span class="n">revoke_global_option_changed</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">option</span><span class="p">)</span>
        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">module</span><span class="p">:</span>
            <span class="n">psi4</span><span class="o">.</span><span class="n">set_local_option</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">module</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">option</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">value_local</span><span class="p">)</span>
            <span class="k">if</span> <span class="ow">not</span> <span class="bp">self</span><span class="o">.</span><span class="n">haschanged_local</span><span class="p">:</span>
                <span class="n">psi4</span><span class="o">.</span><span class="n">revoke_local_option_changed</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">module</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">option</span><span class="p">)</span>

</div></div>
<div class="viewcode-block" id="OptionsState"><a class="viewcode-back" href="../../autodoc_driver.html#p4util.optproc.OptionsState">[docs]</a><span class="k">class</span> <span class="nc">OptionsState</span><span class="p">(</span><span class="nb">object</span><span class="p">):</span>
    <span class="sd">&quot;&quot;&quot;Class to contain multiple :py:func:`~optproc.OptionsState` objects.</span>
<span class="sd">    Used in python driver functions to collect several options before altering</span>
<span class="sd">    them, then restoring before function return. ::</span>

<span class="sd">        &gt;&gt;&gt; optstash = OptionsState(</span>
<span class="sd">                [&#39;SCF&#39;, &#39;DFT_FUNCTIONAL&#39;],</span>
<span class="sd">                [&#39;DF_BASIS_SCF&#39;],</span>
<span class="sd">                [&#39;SCF&#39;, &#39;SCF_TYPE&#39;],</span>
<span class="sd">                [&#39;SCF&#39;, &#39;REFERENCE&#39;])</span>

<span class="sd">        &gt;&gt;&gt; print(optstash)</span>

<span class="sd">        &gt;&gt;&gt; optstash.restore()</span>

<span class="sd">    &quot;&quot;&quot;</span>
    <span class="k">def</span> <span class="nf">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="o">*</span><span class="n">largs</span><span class="p">):</span>
        <span class="bp">self</span><span class="o">.</span><span class="n">data</span> <span class="o">=</span> <span class="p">[]</span>
        <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">largs</span><span class="p">:</span>
            <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">item</span><span class="p">)</span> <span class="o">==</span> <span class="mi">2</span><span class="p">:</span>
                <span class="bp">self</span><span class="o">.</span><span class="n">data</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">OptionState</span><span class="p">(</span><span class="n">item</span><span class="p">[</span><span class="mi">1</span><span class="p">],</span> <span class="n">item</span><span class="p">[</span><span class="mi">0</span><span class="p">]))</span>
            <span class="k">elif</span> <span class="nb">len</span><span class="p">(</span><span class="n">item</span><span class="p">)</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
                <span class="bp">self</span><span class="o">.</span><span class="n">data</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">OptionState</span><span class="p">(</span><span class="n">item</span><span class="p">[</span><span class="mi">0</span><span class="p">]))</span>
            <span class="k">else</span><span class="p">:</span>
                <span class="k">raise</span> <span class="n">ValidationError</span><span class="p">(</span><span class="s">&#39;Each argument to OptionsState should be an array, the first element of which is     the module scope and the second element of which is the module name. Bad argument: </span><span class="si">%s</span><span class="s">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">item</span><span class="p">))</span>

    <span class="k">def</span> <span class="nf">__str__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
        <span class="n">text</span> <span class="o">=</span> <span class="s">&#39;&#39;</span>
        <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">data</span><span class="p">:</span>
            <span class="n">text</span> <span class="o">+=</span> <span class="nb">str</span><span class="p">(</span><span class="n">item</span><span class="p">)</span>
        <span class="k">return</span> <span class="n">text</span>

<div class="viewcode-block" id="OptionsState.restore"><a class="viewcode-back" href="../../autodoc_driver.html#p4util.optproc.OptionsState.restore">[docs]</a>    <span class="k">def</span> <span class="nf">restore</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
        <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">data</span><span class="p">:</span>
            <span class="n">item</span><span class="o">.</span><span class="n">restore</span><span class="p">()</span>
</pre></div></div></div>

          </div>
        </div>
      </div>
      <div class="sphinxsidebar">
        <div class="sphinxsidebarwrapper">
<div id="searchbox" style="display: none">
  <h3>Quick search</h3>
    <form class="search" action="../../search.html" method="get">
      <input type="text" name="q" />
      <input type="submit" value="Go" />
      <input type="hidden" name="check_keywords" value="yes" />
      <input type="hidden" name="area" value="default" />
    </form>
    <p class="searchtip" style="font-size: 90%">
    Enter search terms or a module, class or function name.
    </p>
</div>
<script type="text/javascript">$('#searchbox').show(0);</script>
        </div>
      </div>
      <div class="clearer"></div>
    </div>
    <div class="relbar-bottom">
        
    <div class="related">
      <h3>Navigation</h3>
      <ul>
        <li class="right" style="margin-right: 10px">
          <a href="../../genindex.html" title="General Index"
             >index</a></li>
        <li class="right" >
          <a href="../../py-modindex.html" title="Python Module Index"
             >modules</a> &nbsp; &nbsp;</li>
        <li class="right" >
          <a href="../../contents.html" title="Table Of Contents"
             >toc</a> &nbsp; &nbsp;</li>
    <li><a href="../../index.html">PSI4 []</a> &raquo; </li>

          <li><a href="../index.html" >Module code</a> &raquo;</li> 
      </ul>
    </div>
    </div>

    <div class="footer">
        &copy; Copyright 2013, The Psi4 Project.
      Last updated on May 13, 2014.
      Created using <a href="http://sphinx.pocoo.org/">Sphinx</a> 1.1.3.
    </div>
    <!-- cloud_sptheme 1.3 -->
  </body>
</html>