- Name: openms
- Version: 1.11.1
- Release: 11.fc20
- Epoch:
- Group: Unspecified
- License: BSD
- Url: http://open-ms.sourceforge.net/
- Summary: LC/MS data management and analyses
- Architecture: i686
- Size: 54360380
- Distribution: Fedora Project
- Vendor: Fedora Project
- Packager: Fedora Project
Description:
OpenMS is an open-source C++ library for LC/MS data management and analyses.
It offers an infrastructure for the rapid development
of mass spectrometry related software.
It comes with a vast variety ready-to-use tools for proteomics and
metabolomics data analysis (TOPPTools) and powerful 2D and
3D visualization(TOPPView).
OpenMS offers analyses for various quantitation protocols,
including label-free quantitation, SILAC, iTRAQ, SRM, SWATH.
OpenMS supports the Proteomics Standard Initiative (PSI) formats for MS data.
The OpenMS Proteomics Pipeline is a pipeline for
the analysis of HPLC-MS data.
It consists of several small applications that
can be chained to create analysis pipelines tailored
for a specific problem.
The TOPP tools are divided into several subgroups:
- Graphical Tools
- File Handling
- Signal Processing and Preprocessing
- Quantitation
- Map Alignment
- Protein/Peptide Identification
- Protein/Peptide Processing
- Targeted Experiments
- Peptide Property Prediction
- Misc
- OptFlags: -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables
- Cookie:
- Buildhost: buildvm-17.phx2.fedoraproject.org
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