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<div id="projectname">The Gnome Chemistry Utils
 <span id="projectnumber">0.14.2</span>
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<li class="navelem"><a class="el" href="namespacegcr.html">gcr</a></li><li class="navelem"><a class="el" href="classgcr_1_1Atom.html">Atom</a></li> </ul>
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<a href="#pub-methods">Public Member Functions</a> |
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<div class="title">gcr::Atom Class Reference</div> </div>
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<p><code>#include <<a class="el" href="gcr_2atom_8h_source.html">gcr/atom.h</a>></code></p>
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Inheritance diagram for gcr::Atom:</div>
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<tr class="heading"><td colspan="2"><h2><a name="pub-methods"></a>
Public Member Functions</h2></td></tr>
<tr class="memitem:a98d209e08beb455c8d051512c08ce5c9"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcr_1_1Atom.html#a98d209e08beb455c8d051512c08ce5c9">Atom</a> ()</td></tr>
<tr class="memitem:a73697f87aee4cfb68f98b536755bab88"><td class="memItemLeft" align="right" valign="top">virtual </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcr_1_1Atom.html#a73697f87aee4cfb68f98b536755bab88">~Atom</a> ()</td></tr>
<tr class="memitem:a24d690baa560aab0ffc66a2a2669148e"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcr_1_1Atom.html#a24d690baa560aab0ffc66a2a2669148e">Atom</a> (int Z, double <a class="el" href="classgcu_1_1Atom.html#a845f98c4e1bb2fe68dfa3fc61a83f79d">x</a>, double <a class="el" href="classgcu_1_1Atom.html#a483d6aec85bb09acf681d0070f46149c">y</a>, double <a class="el" href="classgcu_1_1Atom.html#aca911471b8848a4c78205c328557a7cc">z</a>)</td></tr>
<tr class="memitem:ae1ca83f60f270708531fad3af0a2f0a2"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcr_1_1Atom.html#ae1ca83f60f270708531fad3af0a2f0a2">Atom</a> (<a class="el" href="classgcr_1_1Atom.html">Atom</a> &caAtom)</td></tr>
<tr class="memitem:ace86c61de2c38197b30d5d23c447b4b4"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcr_1_1Atom.html#ace86c61de2c38197b30d5d23c447b4b4">SetColor</a> (float red, float green, float blue, float alpha)</td></tr>
<tr class="memitem:aef9bd5861d63c10952efe8582b55292a"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcr_1_1Atom.html#aef9bd5861d63c10952efe8582b55292a">SetDefaultColor</a> ()</td></tr>
<tr class="memitem:a99d8a6a48209b0e7bbfd6078ab9e8fab"><td class="memItemLeft" align="right" valign="top">bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcr_1_1Atom.html#a99d8a6a48209b0e7bbfd6078ab9e8fab">HasCustomColor</a> ()</td></tr>
<tr class="memitem:a36dcef523fa4c6eb71b4f020eb067f72"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcr_1_1Atom.html#a36dcef523fa4c6eb71b4f020eb067f72">GetColor</a> (double *red, double *green, double *blue, double *alpha)</td></tr>
<tr class="memitem:acec707ec1f35fe18c7500612c281f8c9"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcr_1_1Atom.html#acec707ec1f35fe18c7500612c281f8c9">SetSize</a> (double <a class="el" href="classgcr_1_1Atom.html#a0dcbf3452280e92b00738e787f15f718">r</a>)</td></tr>
<tr class="memitem:a1d3c7641a6c56fd56fe1ec69f065c84b"><td class="memItemLeft" align="right" valign="top">double </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcr_1_1Atom.html#a1d3c7641a6c56fd56fe1ec69f065c84b">GetSize</a> ()</td></tr>
<tr class="memitem:a1ebf59daee72cfe08b8caed7d98c768e"><td class="memItemLeft" align="right" valign="top">bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcr_1_1Atom.html#a1ebf59daee72cfe08b8caed7d98c768e">operator==</a> (<a class="el" href="classgcr_1_1Atom.html">Atom</a> &caAtom)</td></tr>
<tr class="memitem:a8c96ad91bdbbe730889a91855c206c99"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcr_1_1Atom.html#a8c96ad91bdbbe730889a91855c206c99">Cleave</a> ()</td></tr>
<tr class="memitem:a89ebfaeb7445f75f384a058859f501b2"><td class="memItemLeft" align="right" valign="top">double </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcr_1_1Atom.html#a89ebfaeb7445f75f384a058859f501b2">ScalProd</a> (int h, int k, int l)</td></tr>
<tr class="memitem:a007b6c25a928381a6032618c3baca0a0"><td class="memItemLeft" align="right" valign="top">double </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcr_1_1Atom.html#a007b6c25a928381a6032618c3baca0a0">Distance</a> (double <a class="el" href="classgcu_1_1Atom.html#a845f98c4e1bb2fe68dfa3fc61a83f79d">x</a>, double <a class="el" href="classgcu_1_1Atom.html#a483d6aec85bb09acf681d0070f46149c">y</a>, double <a class="el" href="classgcu_1_1Atom.html#aca911471b8848a4c78205c328557a7cc">z</a>, bool bFixed)</td></tr>
<tr class="memitem:a0dcbf3452280e92b00738e787f15f718"><td class="memItemLeft" align="right" valign="top">double </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcr_1_1Atom.html#a0dcbf3452280e92b00738e787f15f718">r</a> ()</td></tr>
<tr class="memitem:aef8153ea849f5fc669c260d2614c633e"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="structGcuAtomicRadius.html">GcuAtomicRadius</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcr_1_1Atom.html#aef8153ea849f5fc669c260d2614c633e">GetRadius</a> ()</td></tr>
<tr class="memitem:a49ed0650f5fdeea1d5ce6364af9c77ca"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcr_1_1Atom.html#a49ed0650f5fdeea1d5ce6364af9c77ca">SetRadius</a> (const <a class="el" href="structGcuAtomicRadius.html">GcuAtomicRadius</a> &<a class="el" href="classgcr_1_1Atom.html#a0dcbf3452280e92b00738e787f15f718">r</a>)</td></tr>
<tr class="memitem:a79215e58218d8cbf4aded4346e8eff44"><td class="memItemLeft" align="right" valign="top">bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcr_1_1Atom.html#a79215e58218d8cbf4aded4346e8eff44">IsCleaved</a> ()</td></tr>
<tr class="memitem:a6a4524b878ab19098e22070277e356a7"><td class="memItemLeft" align="right" valign="top">virtual bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcr_1_1Atom.html#a6a4524b878ab19098e22070277e356a7">SaveNode</a> (xmlDocPtr xml, xmlNodePtr node) const </td></tr>
<tr class="memitem:a8cb2a40703531143af35e4ea7bf35953"><td class="memItemLeft" align="right" valign="top">virtual bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcr_1_1Atom.html#a8cb2a40703531143af35e4ea7bf35953">LoadNode</a> (xmlNodePtr node)</td></tr>
<tr class="inherit_header pub_methods_classgcu_1_1Atom"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classgcu_1_1Atom')"><img src="closed.png" alt="-"/> Public Member Functions inherited from <a class="el" href="classgcu_1_1Atom.html">gcu::Atom</a></td></tr>
<tr class="memitem:a7610b9679bf0dbfa6febefed539afc8d inherit pub_methods_classgcu_1_1Atom"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Atom.html#a7610b9679bf0dbfa6febefed539afc8d">Atom</a> (<a class="el" href="classgcu_1_1Atom.html">Atom</a> &a)</td></tr>
<tr class="memitem:a73b1c38cbd4118c055720c7aec030b89 inherit pub_methods_classgcu_1_1Atom"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classgcu_1_1Atom.html">Atom</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Atom.html#a73b1c38cbd4118c055720c7aec030b89">operator=</a> (<a class="el" href="classgcu_1_1Atom.html">Atom</a> &a)</td></tr>
<tr class="memitem:a8e0470a96bc1fe3f1a2ceab7afc3fb63 inherit pub_methods_classgcu_1_1Atom"><td class="memItemLeft" align="right" valign="top">double </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Atom.html#a8e0470a96bc1fe3f1a2ceab7afc3fb63">Distance</a> (<a class="el" href="classgcu_1_1Atom.html">Atom</a> *pAtom)</td></tr>
<tr class="memitem:ab60ac47e3be8db95e1c9f2c2e986ff71 inherit pub_methods_classgcu_1_1Atom"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Atom.html#ab60ac47e3be8db95e1c9f2c2e986ff71">zoom</a> (double ZoomFactor)</td></tr>
<tr class="memitem:a8c63d0cca391f39f43f9f58fa7afc9f4 inherit pub_methods_classgcu_1_1Atom"><td class="memItemLeft" align="right" valign="top">bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Atom.html#a8c63d0cca391f39f43f9f58fa7afc9f4">GetCoords</a> (double *<a class="el" href="classgcu_1_1Atom.html#a845f98c4e1bb2fe68dfa3fc61a83f79d">x</a>, double *<a class="el" href="classgcu_1_1Atom.html#a483d6aec85bb09acf681d0070f46149c">y</a>, double *<a class="el" href="classgcu_1_1Atom.html#aca911471b8848a4c78205c328557a7cc">z</a>=NULL) const </td></tr>
<tr class="memitem:ab9dbdfc744e2d8edf99f4009215866c6 inherit pub_methods_classgcu_1_1Atom"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Atom.html#ab9dbdfc744e2d8edf99f4009215866c6">SetCoords</a> (double <a class="el" href="classgcu_1_1Atom.html#a845f98c4e1bb2fe68dfa3fc61a83f79d">x</a>, double <a class="el" href="classgcu_1_1Atom.html#a483d6aec85bb09acf681d0070f46149c">y</a>, double <a class="el" href="classgcu_1_1Atom.html#aca911471b8848a4c78205c328557a7cc">z</a>=0)</td></tr>
<tr class="memitem:a3b5b44c467ea583adbaa77c263f33a8a inherit pub_methods_classgcu_1_1Atom"><td class="memItemLeft" align="right" valign="top">int </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Atom.html#a3b5b44c467ea583adbaa77c263f33a8a">GetZ</a> () const </td></tr>
<tr class="memitem:a38a15b6551a3eb6646206ba933af1fff inherit pub_methods_classgcu_1_1Atom"><td class="memItemLeft" align="right" valign="top">virtual void </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Atom.html#a38a15b6551a3eb6646206ba933af1fff">SetZ</a> (int Z)</td></tr>
<tr class="memitem:ae22a3f7878ca7b08aa93004587303d9d inherit pub_methods_classgcu_1_1Atom"><td class="memItemLeft" align="right" valign="top">virtual void </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Atom.html#ae22a3f7878ca7b08aa93004587303d9d">SetCharge</a> (char Charge)</td></tr>
<tr class="memitem:abdfd5d40227e19f53db6baee57c30260 inherit pub_methods_classgcu_1_1Atom"><td class="memItemLeft" align="right" valign="top">char </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Atom.html#abdfd5d40227e19f53db6baee57c30260">GetCharge</a> ()</td></tr>
<tr class="memitem:a4371e488d9548ea7d9b6ee48c3be83bc inherit pub_methods_classgcu_1_1Atom"><td class="memItemLeft" align="right" valign="top">virtual const gchar * </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Atom.html#a4371e488d9548ea7d9b6ee48c3be83bc">GetSymbol</a> () const </td></tr>
<tr class="memitem:a374ed31f84f3400bf107c8fc5557acb3 inherit pub_methods_classgcu_1_1Atom"><td class="memItemLeft" align="right" valign="top">virtual void </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Atom.html#a374ed31f84f3400bf107c8fc5557acb3">AddBond</a> (<a class="el" href="classgcu_1_1Bond.html">Bond</a> *pBond)</td></tr>
<tr class="memitem:a687994b362c10a22a301aa12a960ce37 inherit pub_methods_classgcu_1_1Atom"><td class="memItemLeft" align="right" valign="top">virtual void </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Atom.html#a687994b362c10a22a301aa12a960ce37">RemoveBond</a> (<a class="el" href="classgcu_1_1Bond.html">Bond</a> *pBond)</td></tr>
<tr class="memitem:a845f98c4e1bb2fe68dfa3fc61a83f79d inherit pub_methods_classgcu_1_1Atom"><td class="memItemLeft" align="right" valign="top">double </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Atom.html#a845f98c4e1bb2fe68dfa3fc61a83f79d">x</a> () const </td></tr>
<tr class="memitem:a483d6aec85bb09acf681d0070f46149c inherit pub_methods_classgcu_1_1Atom"><td class="memItemLeft" align="right" valign="top">double </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Atom.html#a483d6aec85bb09acf681d0070f46149c">y</a> () const </td></tr>
<tr class="memitem:aca911471b8848a4c78205c328557a7cc inherit pub_methods_classgcu_1_1Atom"><td class="memItemLeft" align="right" valign="top">double </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Atom.html#aca911471b8848a4c78205c328557a7cc">z</a> () const </td></tr>
<tr class="memitem:a4b693135365bae35648c96e6788407f0 inherit pub_methods_classgcu_1_1Atom"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classgcu_1_1Vector.html">Vector</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Atom.html#a4b693135365bae35648c96e6788407f0">GetVector</a> () const </td></tr>
<tr class="memitem:a2c4b85fd9b08205696fc40d86ca1aebe inherit pub_methods_classgcu_1_1Atom"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classgcu_1_1Bond.html">Bond</a> * </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Atom.html#a2c4b85fd9b08205696fc40d86ca1aebe">GetFirstBond</a> (std::map< <a class="el" href="classgcu_1_1Atom.html">Atom</a> *, <a class="el" href="classgcu_1_1Bond.html">Bond</a> * >::iterator &i)</td></tr>
<tr class="memitem:aca168b840447f66d587d71d2aeafd274 inherit pub_methods_classgcu_1_1Atom"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classgcu_1_1Bond.html">Bond</a> const * </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Atom.html#aca168b840447f66d587d71d2aeafd274">GetFirstBond</a> (std::map< <a class="el" href="classgcu_1_1Atom.html">Atom</a> *, <a class="el" href="classgcu_1_1Bond.html">Bond</a> * >::const_iterator &i) const </td></tr>
<tr class="memitem:acb42e7980b0bc5a070324f1fc07fa989 inherit pub_methods_classgcu_1_1Atom"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classgcu_1_1Bond.html">Bond</a> * </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Atom.html#acb42e7980b0bc5a070324f1fc07fa989">GetNextBond</a> (std::map< <a class="el" href="classgcu_1_1Atom.html">Atom</a> *, <a class="el" href="classgcu_1_1Bond.html">Bond</a> * >::iterator &i)</td></tr>
<tr class="memitem:ab853606fc4c4d0ec61cb205fa97f9544 inherit pub_methods_classgcu_1_1Atom"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classgcu_1_1Bond.html">Bond</a> const * </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Atom.html#ab853606fc4c4d0ec61cb205fa97f9544">GetNextBond</a> (std::map< <a class="el" href="classgcu_1_1Atom.html">Atom</a> *, <a class="el" href="classgcu_1_1Bond.html">Bond</a> * >::const_iterator &i) const </td></tr>
<tr class="memitem:a2eceb0aec2b8a0e30bba183af356d200 inherit pub_methods_classgcu_1_1Atom"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classgcu_1_1Bond.html">Bond</a> * </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Atom.html#a2eceb0aec2b8a0e30bba183af356d200">GetBond</a> (<a class="el" href="classgcu_1_1Atom.html">Atom</a> *pAtom) const </td></tr>
<tr class="memitem:a026adef7ae137f92d2a4418dd94d1a30 inherit pub_methods_classgcu_1_1Atom"><td class="memItemLeft" align="right" valign="top">int </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Atom.html#a026adef7ae137f92d2a4418dd94d1a30">GetBondsNumber</a> () const </td></tr>
<tr class="memitem:a4d8e69e2c01645367c6c76c2d92c2433 inherit pub_methods_classgcu_1_1Atom"><td class="memItemLeft" align="right" valign="top">virtual xmlNodePtr </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Atom.html#a4d8e69e2c01645367c6c76c2d92c2433">Save</a> (xmlDocPtr xml) const </td></tr>
<tr class="memitem:a290a0a8c69ca6667d19e9d7f1d71d190 inherit pub_methods_classgcu_1_1Atom"><td class="memItemLeft" align="right" valign="top">virtual bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Atom.html#a290a0a8c69ca6667d19e9d7f1d71d190">Load</a> (xmlNodePtr node)</td></tr>
<tr class="memitem:aab7ca2a758dc755d3da936cae82d1485 inherit pub_methods_classgcu_1_1Atom"><td class="memItemLeft" align="right" valign="top">virtual void </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Atom.html#aab7ca2a758dc755d3da936cae82d1485">Move</a> (double <a class="el" href="classgcu_1_1Atom.html#a845f98c4e1bb2fe68dfa3fc61a83f79d">x</a>, double <a class="el" href="classgcu_1_1Atom.html#a483d6aec85bb09acf681d0070f46149c">y</a>, double <a class="el" href="classgcu_1_1Atom.html#aca911471b8848a4c78205c328557a7cc">z</a>=0.)</td></tr>
<tr class="memitem:a2ff6b67af11f6414fe8e972507e37f62 inherit pub_methods_classgcu_1_1Atom"><td class="memItemLeft" align="right" valign="top">virtual void </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Atom.html#a2ff6b67af11f6414fe8e972507e37f62">Transform2D</a> (<a class="el" href="classgcu_1_1Matrix2D.html">Matrix2D</a> &m, double <a class="el" href="classgcu_1_1Atom.html#a845f98c4e1bb2fe68dfa3fc61a83f79d">x</a>, double <a class="el" href="classgcu_1_1Atom.html#a483d6aec85bb09acf681d0070f46149c">y</a>)</td></tr>
<tr class="memitem:a8130046e2fd1ae7085935efe65c2ef94 inherit pub_methods_classgcu_1_1Atom"><td class="memItemLeft" align="right" valign="top">bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Atom.html#a8130046e2fd1ae7085935efe65c2ef94">IsInCycle</a> (<a class="el" href="classgcu_1_1Cycle.html">Cycle</a> *pCycle)</td></tr>
<tr class="memitem:a3d8c5f65e203f23175c3422ef548e7f8 inherit pub_methods_classgcu_1_1Atom"><td class="memItemLeft" align="right" valign="top">virtual bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Atom.html#a3d8c5f65e203f23175c3422ef548e7f8">Match</a> (<a class="el" href="classgcu_1_1Atom.html">Atom</a> *atom, <a class="el" href="classgcu_1_1AtomMatchState.html">AtomMatchState</a> &state)</td></tr>
<tr class="memitem:af41bf7c02e9a0dbf77156a9813fa1924 inherit pub_methods_classgcu_1_1Atom"><td class="memItemLeft" align="right" valign="top">std::string </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Atom.html#af41bf7c02e9a0dbf77156a9813fa1924">Name</a> ()</td></tr>
<tr class="memitem:a88f4565c7f8d1d8fd7575855655139bb inherit pub_methods_classgcu_1_1Atom"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Atom.html#a88f4565c7f8d1d8fd7575855655139bb">NetToCartesian</a> (double a, double b, double c, double alpha, double beta, double gamma)</td></tr>
<tr class="inherit_header pub_methods_classgcu_1_1Object"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classgcu_1_1Object')"><img src="closed.png" alt="-"/> Public Member Functions inherited from <a class="el" href="classgcu_1_1Object.html">gcu::Object</a></td></tr>
<tr class="memitem:a6f15e766fdfb066008bd4b0779574549 inherit pub_methods_classgcu_1_1Object"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Object.html#a6f15e766fdfb066008bd4b0779574549">Object</a> (<a class="el" href="namespacegcu.html#a4a6abffbefdd6abf047dca4e63b0bac5">TypeId</a> Id=OtherType)</td></tr>
<tr class="memitem:a3e575300e517594b0c2c161d6e704352 inherit pub_methods_classgcu_1_1Object"><td class="memItemLeft" align="right" valign="top">virtual </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Object.html#a3e575300e517594b0c2c161d6e704352">~Object</a> ()</td></tr>
<tr class="memitem:a9c900a7a382cad4a995edbb10b8f179d inherit pub_methods_classgcu_1_1Object"><td class="memItemLeft" align="right" valign="top"><a class="el" href="namespacegcu.html#a4a6abffbefdd6abf047dca4e63b0bac5">TypeId</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Object.html#a9c900a7a382cad4a995edbb10b8f179d">GetType</a> () const </td></tr>
<tr class="memitem:ac45cdb13cf013066a3704054c9d06ed0 inherit pub_methods_classgcu_1_1Object"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Object.html#ac45cdb13cf013066a3704054c9d06ed0">SetId</a> (gchar const *Id)</td></tr>
<tr class="memitem:aef94f9435a51669a518b5a713f24e7ca inherit pub_methods_classgcu_1_1Object"><td class="memItemLeft" align="right" valign="top">char const * </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Object.html#aef94f9435a51669a518b5a713f24e7ca">GetId</a> () const </td></tr>
<tr class="memitem:ad054f1ae4f0cd697765aa4d2007521b2 inherit pub_methods_classgcu_1_1Object"><td class="memItemLeft" align="right" valign="top">virtual void </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Object.html#ad054f1ae4f0cd697765aa4d2007521b2">AddChild</a> (<a class="el" href="classgcu_1_1Object.html">Object</a> *object)</td></tr>
<tr class="memitem:adf610a8402000e9f9ae9ad0135c1d7da inherit pub_methods_classgcu_1_1Object"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classgcu_1_1Object.html">Object</a> * </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Object.html#adf610a8402000e9f9ae9ad0135c1d7da">GetMolecule</a> () const </td></tr>
<tr class="memitem:adaba7d20336b8036b6bfb7ef3884880a inherit pub_methods_classgcu_1_1Object"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classgcu_1_1Object.html">Object</a> * </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Object.html#adaba7d20336b8036b6bfb7ef3884880a">GetReaction</a> () const </td></tr>
<tr class="memitem:a841968632d00e5d879694ee84737225b inherit pub_methods_classgcu_1_1Object"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classgcu_1_1Object.html">Object</a> * </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Object.html#a841968632d00e5d879694ee84737225b">GetGroup</a> () const </td></tr>
<tr class="memitem:a274432165e22fa89a375eded192631db inherit pub_methods_classgcu_1_1Object"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classgcu_1_1Document.html">Document</a> * </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Object.html#a274432165e22fa89a375eded192631db">GetDocument</a> () const </td></tr>
<tr class="memitem:ab65facd99621938dfbd6330ccee1e9f7 inherit pub_methods_classgcu_1_1Object"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classgcu_1_1Application.html">Application</a> * </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Object.html#ab65facd99621938dfbd6330ccee1e9f7">GetApplication</a> () const </td></tr>
<tr class="memitem:a158be0361aaadca1d03fdb5b5d3089b2 inherit pub_methods_classgcu_1_1Object"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classgcu_1_1Object.html">Object</a> * </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Object.html#a158be0361aaadca1d03fdb5b5d3089b2">GetParentOfType</a> (<a class="el" href="namespacegcu.html#a4a6abffbefdd6abf047dca4e63b0bac5">TypeId</a> Id) const </td></tr>
<tr class="memitem:a026b22b02b09f8f9f535197f2d936c07 inherit pub_methods_classgcu_1_1Object"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classgcu_1_1Object.html">Object</a> * </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Object.html#a026b22b02b09f8f9f535197f2d936c07">GetChild</a> (const gchar *Id) const </td></tr>
<tr class="memitem:a5fe8cfbfe83645c292f8895aba4a91d0 inherit pub_methods_classgcu_1_1Object"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classgcu_1_1Object.html">Object</a> * </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Object.html#a5fe8cfbfe83645c292f8895aba4a91d0">GetFirstChild</a> (std::map< std::string, <a class="el" href="classgcu_1_1Object.html">Object</a> * >::iterator &i)</td></tr>
<tr class="memitem:a70ff8a33f72e424f3c39b3d0edbe9903 inherit pub_methods_classgcu_1_1Object"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classgcu_1_1Object.html">Object</a> * </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Object.html#a70ff8a33f72e424f3c39b3d0edbe9903">GetNextChild</a> (std::map< std::string, <a class="el" href="classgcu_1_1Object.html">Object</a> * >::iterator &i)</td></tr>
<tr class="memitem:ab70083d7ebb2cf32180c5383b5bb428c inherit pub_methods_classgcu_1_1Object"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classgcu_1_1Object.html">Object</a> * </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Object.html#ab70083d7ebb2cf32180c5383b5bb428c">GetDescendant</a> (const char *Id) const </td></tr>
<tr class="memitem:abacb2c2002726a3237ffbd0e50e3df52 inherit pub_methods_classgcu_1_1Object"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classgcu_1_1Object.html">Object</a> * </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Object.html#abacb2c2002726a3237ffbd0e50e3df52">GetParent</a> () const </td></tr>
<tr class="memitem:a0ffe1f48151c92f167eeec303277e45c inherit pub_methods_classgcu_1_1Object"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Object.html#a0ffe1f48151c92f167eeec303277e45c">SetParent</a> (<a class="el" href="classgcu_1_1Object.html">Object</a> *Parent)</td></tr>
<tr class="memitem:a07de41cb137a650b51920d6186fc82d7 inherit pub_methods_classgcu_1_1Object"><td class="memItemLeft" align="right" valign="top">bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Object.html#a07de41cb137a650b51920d6186fc82d7">SaveChildren</a> (xmlDocPtr xml, xmlNodePtr node) const </td></tr>
<tr class="memitem:a5f99b290d7e48c38738342dfc984865d inherit pub_methods_classgcu_1_1Object"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Object.html#a5f99b290d7e48c38738342dfc984865d">SaveId</a> (xmlNodePtr node) const </td></tr>
<tr class="memitem:ad533d866f1478a972a1896499e5659a5 inherit pub_methods_classgcu_1_1Object"><td class="memItemLeft" align="right" valign="top">xmlNodePtr </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Object.html#ad533d866f1478a972a1896499e5659a5">GetNodeByProp</a> (xmlNodePtr node, char const *Property, char const *Id)</td></tr>
<tr class="memitem:aa19f11cca83189a955f0a7bf2919562b inherit pub_methods_classgcu_1_1Object"><td class="memItemLeft" align="right" valign="top">xmlNodePtr </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Object.html#aa19f11cca83189a955f0a7bf2919562b">GetNextNodeByProp</a> (xmlNodePtr node, char const *Property, char const *Id)</td></tr>
<tr class="memitem:a4e8712098d673c958fb0c72488058f80 inherit pub_methods_classgcu_1_1Object"><td class="memItemLeft" align="right" valign="top">xmlNodePtr </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Object.html#a4e8712098d673c958fb0c72488058f80">GetNodeByName</a> (xmlNodePtr node, char const *<a class="el" href="classgcu_1_1Object.html#ae19033807f4b7ee9321f308bb0ffd3b9">Name</a>)</td></tr>
<tr class="memitem:a2dc10bf48d3ebfe86853cace21e9abf2 inherit pub_methods_classgcu_1_1Object"><td class="memItemLeft" align="right" valign="top">xmlNodePtr </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Object.html#a2dc10bf48d3ebfe86853cace21e9abf2">GetNextNodeByName</a> (xmlNodePtr node, char const *<a class="el" href="classgcu_1_1Object.html#ae19033807f4b7ee9321f308bb0ffd3b9">Name</a>)</td></tr>
<tr class="memitem:a28f682a2891b17ae57c5f346c95d6f50 inherit pub_methods_classgcu_1_1Object"><td class="memItemLeft" align="right" valign="top">bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Object.html#a28f682a2891b17ae57c5f346c95d6f50">HasChildren</a> () const </td></tr>
<tr class="memitem:a5e3d6fbdc8b10a9dbf43de2c052fff05 inherit pub_methods_classgcu_1_1Object"><td class="memItemLeft" align="right" valign="top">unsigned </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Object.html#a5e3d6fbdc8b10a9dbf43de2c052fff05">GetChildrenNumber</a> () const </td></tr>
<tr class="memitem:aa47c38061c6a2e51947d89c86fbae630 inherit pub_methods_classgcu_1_1Object"><td class="memItemLeft" align="right" valign="top">virtual <a class="el" href="classgcu_1_1Object.html">Object</a> * </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Object.html#aa47c38061c6a2e51947d89c86fbae630">GetAtomAt</a> (double x, double y, double z=0.)</td></tr>
<tr class="memitem:af1da4274cbbf0ca56bf8d380743d49e7 inherit pub_methods_classgcu_1_1Object"><td class="memItemLeft" align="right" valign="top">virtual bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Object.html#af1da4274cbbf0ca56bf8d380743d49e7">Build</a> (std::set< <a class="el" href="classgcu_1_1Object.html">Object</a> * > const &Children) throw (std::invalid_argument)</td></tr>
<tr class="memitem:aedeec6e6b66e1a35e6d2f3ef75c94a09 inherit pub_methods_classgcu_1_1Object"><td class="memItemLeft" align="right" valign="top">virtual double </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Object.html#aedeec6e6b66e1a35e6d2f3ef75c94a09">GetYAlign</a> ()</td></tr>
<tr class="memitem:acc55e92f84843058139d3a729aa6afcb inherit pub_methods_classgcu_1_1Object"><td class="memItemLeft" align="right" valign="top">virtual bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Object.html#acc55e92f84843058139d3a729aa6afcb">BuildContextualMenu</a> (<a class="el" href="classgcu_1_1UIManager.html">UIManager</a> *uim, <a class="el" href="classgcu_1_1Object.html">Object</a> *object, double x, double y)</td></tr>
<tr class="memitem:acf16b429a6875e5620fa8051446ef34c inherit pub_methods_classgcu_1_1Object"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Object.html#acf16b429a6875e5620fa8051446ef34c">EmitSignal</a> (<a class="el" href="namespacegcu.html#af13348b065987fa4ca74ca0fb1ffa48e">SignalId</a> Signal)</td></tr>
<tr class="memitem:a1ad183ecf7e5b5c42db100da03221e46 inherit pub_methods_classgcu_1_1Object"><td class="memItemLeft" align="right" valign="top">virtual bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Object.html#a1ad183ecf7e5b5c42db100da03221e46">OnSignal</a> (<a class="el" href="namespacegcu.html#af13348b065987fa4ca74ca0fb1ffa48e">SignalId</a> Signal, <a class="el" href="classgcu_1_1Object.html">Object</a> *Child)</td></tr>
<tr class="memitem:a8b4da97be50a4ceea941ab8aa8ece825 inherit pub_methods_classgcu_1_1Object"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Object.html#a8b4da97be50a4ceea941ab8aa8ece825">Lock</a> (bool state=true)</td></tr>
<tr class="memitem:a4094e3d8cf58a6f9de9cb6c6b6fed8c8 inherit pub_methods_classgcu_1_1Object"><td class="memItemLeft" align="right" valign="top">bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Object.html#a4094e3d8cf58a6f9de9cb6c6b6fed8c8">IsLocked</a> ()</td></tr>
<tr class="memitem:a79e87eb91afb57ebf188fdc3753cba7d inherit pub_methods_classgcu_1_1Object"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classgcu_1_1Object.html">Object</a> * </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Object.html#a79e87eb91afb57ebf188fdc3753cba7d">GetFirstLink</a> (std::set< <a class="el" href="classgcu_1_1Object.html">Object</a> * >::iterator &i)</td></tr>
<tr class="memitem:a61b227220c2b831b7196d2bd61201bdc inherit pub_methods_classgcu_1_1Object"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classgcu_1_1Object.html">Object</a> * </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Object.html#a61b227220c2b831b7196d2bd61201bdc">GetNextLink</a> (std::set< <a class="el" href="classgcu_1_1Object.html">Object</a> * >::iterator &i)</td></tr>
<tr class="memitem:a0173055f0ba60038d9d913b5f09bb354 inherit pub_methods_classgcu_1_1Object"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Object.html#a0173055f0ba60038d9d913b5f09bb354">Link</a> (<a class="el" href="classgcu_1_1Object.html">Object</a> *object)</td></tr>
<tr class="memitem:a606a257c41cd9cc177c98958fdf2ae3d inherit pub_methods_classgcu_1_1Object"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Object.html#a606a257c41cd9cc177c98958fdf2ae3d">Unlink</a> (<a class="el" href="classgcu_1_1Object.html">Object</a> *object)</td></tr>
<tr class="memitem:a786610ff1992e4aa1acff883b5479ec7 inherit pub_methods_classgcu_1_1Object"><td class="memItemLeft" align="right" valign="top">virtual void </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Object.html#a786610ff1992e4aa1acff883b5479ec7">OnUnlink</a> (<a class="el" href="classgcu_1_1Object.html">Object</a> *object)</td></tr>
<tr class="memitem:a97106b6ec695ac946d0a1d04293eef79 inherit pub_methods_classgcu_1_1Object"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Object.html#a97106b6ec695ac946d0a1d04293eef79">GetPossibleAncestorTypes</a> (std::set< <a class="el" href="namespacegcu.html#a4a6abffbefdd6abf047dca4e63b0bac5">TypeId</a> > &types) const </td></tr>
<tr class="memitem:af972c30c9990923c34c54754654c3e72 inherit pub_methods_classgcu_1_1Object"><td class="memItemLeft" align="right" valign="top">virtual void </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Object.html#af972c30c9990923c34c54754654c3e72">OnLoaded</a> ()</td></tr>
<tr class="memitem:a01ea0147ad675e139ddea7aaa2af503c inherit pub_methods_classgcu_1_1Object"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Object.html#a01ea0147ad675e139ddea7aaa2af503c">SetDirty</a> (bool dirty=true)</td></tr>
<tr class="memitem:adce3873de56ddf2abe7dba89e127fc06 inherit pub_methods_classgcu_1_1Object"><td class="memItemLeft" align="right" valign="top">virtual void </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Object.html#adce3873de56ddf2abe7dba89e127fc06">Clear</a> ()</td></tr>
<tr class="memitem:a373cd8efa4af70cdbc4a77086aee82c7 inherit pub_methods_classgcu_1_1Object"><td class="memItemLeft" align="right" valign="top">std::string </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Object.html#a373cd8efa4af70cdbc4a77086aee82c7">Identity</a> ()</td></tr>
<tr class="memitem:aceff810bb8bfad7f9a7152eef3dfe46e inherit pub_methods_classgcu_1_1Object"><td class="memItemLeft" align="right" valign="top">virtual char const * </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Object.html#aceff810bb8bfad7f9a7152eef3dfe46e">HasPropertiesDialog</a> () const </td></tr>
<tr class="memitem:a8f3da29ebe1fcc1534ac65b724f3582f inherit pub_methods_classgcu_1_1Object"><td class="memItemLeft" align="right" valign="top">virtual bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Object.html#a8f3da29ebe1fcc1534ac65b724f3582f">CanSelect</a> () const </td></tr>
<tr class="memitem:a67e3c8ee2104cd937aea48dabde7d319 inherit pub_methods_classgcu_1_1Object"><td class="memItemLeft" align="right" valign="top">virtual void </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Object.html#a67e3c8ee2104cd937aea48dabde7d319">NotifyEmpty</a> ()</td></tr>
<tr class="memitem:a45b59346e78b7a9927d379bb65df1710 inherit pub_methods_classgcu_1_1Object"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Object.html#a45b59346e78b7a9927d379bb65df1710">ShowPropertiesDialog</a> ()</td></tr>
<tr class="memitem:a71e2333cf4d47abdd272a8709361829f inherit pub_methods_classgcu_1_1Object"><td class="memItemLeft" align="right" valign="top">bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Object.html#a71e2333cf4d47abdd272a8709361829f">GetDirty</a> (void) const </td></tr>
</table><table class="memberdecls">
<tr class="heading"><td colspan="2"><h2><a name="pro-methods"></a>
Protected Member Functions</h2></td></tr>
<tr class="memitem:a3c343958bee49282b671a343218ae165"><td class="memItemLeft" align="right" valign="top">bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcr_1_1Atom.html#a3c343958bee49282b671a343218ae165">SetProperty</a> (unsigned property, char const *value)</td></tr>
<tr class="memitem:ac7a91f0accef35a1539ac09ca7b54d1b"><td class="memItemLeft" align="right" valign="top">std::string </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcr_1_1Atom.html#ac7a91f0accef35a1539ac09ca7b54d1b">GetProperty</a> (unsigned property) const </td></tr>
</table><table class="memberdecls">
<tr class="heading"><td colspan="2"><h2><a name="pro-attribs"></a>
Protected Attributes</h2></td></tr>
<tr class="memitem:a61aa5fa658aebf798abaf009f1036f3b"><td class="memItemLeft" align="right" valign="top">float </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcr_1_1Atom.html#a61aa5fa658aebf798abaf009f1036f3b">m_fBlue</a></td></tr>
<tr class="memitem:a81cccba1132c52b7c9422c7a87e61c55"><td class="memItemLeft" align="right" valign="top">float </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcr_1_1Atom.html#a81cccba1132c52b7c9422c7a87e61c55">m_fRed</a></td></tr>
<tr class="memitem:a1206e2a7f5431f4f36eeabd9824d1c1b"><td class="memItemLeft" align="right" valign="top">float </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcr_1_1Atom.html#a1206e2a7f5431f4f36eeabd9824d1c1b">m_fGreen</a></td></tr>
<tr class="memitem:a83bd6a84a329e3c24e98786b4ef809cc"><td class="memItemLeft" align="right" valign="top">float </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcr_1_1Atom.html#a83bd6a84a329e3c24e98786b4ef809cc">m_fAlpha</a></td></tr>
<tr class="memitem:ad18e392c7a17c1e418d83508dc6b26c3"><td class="memItemLeft" align="right" valign="top">bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcr_1_1Atom.html#ad18e392c7a17c1e418d83508dc6b26c3">m_bCustomColor</a></td></tr>
<tr class="memitem:a6b99450fdf58328b1ef8f43d5e10f0e4"><td class="memItemLeft" align="right" valign="top"><a class="el" href="structGcuAtomicRadius.html">GcuAtomicRadius</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcr_1_1Atom.html#a6b99450fdf58328b1ef8f43d5e10f0e4">m_Radius</a></td></tr>
<tr class="memitem:ad7727f31cdf6ff46f6ec0fa3a98d8f21"><td class="memItemLeft" align="right" valign="top">int </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcr_1_1Atom.html#ad7727f31cdf6ff46f6ec0fa3a98d8f21">m_nCleave</a></td></tr>
<tr class="inherit_header pro_attribs_classgcu_1_1Atom"><td colspan="2" onclick="javascript:toggleInherit('pro_attribs_classgcu_1_1Atom')"><img src="closed.png" alt="-"/> Protected Attributes inherited from <a class="el" href="classgcu_1_1Atom.html">gcu::Atom</a></td></tr>
<tr class="memitem:a6fce7561c1e898b10dd418efbd2c7b1a inherit pro_attribs_classgcu_1_1Atom"><td class="memItemLeft" align="right" valign="top">int </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Atom.html#a6fce7561c1e898b10dd418efbd2c7b1a">m_Z</a></td></tr>
<tr class="memitem:ab2c4ef4fd922120c4ff441c64aaa2ee1 inherit pro_attribs_classgcu_1_1Atom"><td class="memItemLeft" align="right" valign="top">double </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Atom.html#ab2c4ef4fd922120c4ff441c64aaa2ee1">m_x</a></td></tr>
<tr class="memitem:af242ce3cb476a56ed16dc78ceeed6901 inherit pro_attribs_classgcu_1_1Atom"><td class="memItemLeft" align="right" valign="top">double </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Atom.html#af242ce3cb476a56ed16dc78ceeed6901">m_y</a></td></tr>
<tr class="memitem:a41a1b4161c01147c951c75f1ff4cae37 inherit pro_attribs_classgcu_1_1Atom"><td class="memItemLeft" align="right" valign="top">double </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Atom.html#a41a1b4161c01147c951c75f1ff4cae37">m_z</a></td></tr>
<tr class="memitem:a733db6db77be736879f983fbb11bcdaa inherit pro_attribs_classgcu_1_1Atom"><td class="memItemLeft" align="right" valign="top">char </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Atom.html#a733db6db77be736879f983fbb11bcdaa">m_Charge</a></td></tr>
<tr class="memitem:a61f209632162c8553a7ebde3c4b194f9 inherit pro_attribs_classgcu_1_1Atom"><td class="memItemLeft" align="right" valign="top">std::map< <a class="el" href="classgcu_1_1Atom.html">Atom</a> *, <a class="el" href="classgcu_1_1Bond.html">Bond</a> * > </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Atom.html#a61f209632162c8553a7ebde3c4b194f9">m_Bonds</a></td></tr>
</table><table class="memberdecls">
<tr class="heading"><td colspan="2"><h2><a name="inherited"></a>
Additional Inherited Members</h2></td></tr>
<tr class="inherit_header pub_static_methods_classgcu_1_1Object"><td colspan="2" onclick="javascript:toggleInherit('pub_static_methods_classgcu_1_1Object')"><img src="closed.png" alt="-"/> Static Public Member Functions inherited from <a class="el" href="classgcu_1_1Object.html">gcu::Object</a></td></tr>
<tr class="memitem:aea6734ca6bde8ae3e0788db43928f42e inherit pub_static_methods_classgcu_1_1Object"><td class="memItemLeft" align="right" valign="top">static <a class="el" href="namespacegcu.html#a4a6abffbefdd6abf047dca4e63b0bac5">TypeId</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Object.html#aea6734ca6bde8ae3e0788db43928f42e">AddType</a> (std::string TypeName, <a class="el" href="classgcu_1_1Object.html">Object</a> *(*CreateFunc)(), <a class="el" href="namespacegcu.html#a4a6abffbefdd6abf047dca4e63b0bac5">TypeId</a> id=OtherType)</td></tr>
<tr class="memitem:a3645f28b3df32308f135ec5b0aac0793 inherit pub_static_methods_classgcu_1_1Object"><td class="memItemLeft" align="right" valign="top">static void </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Object.html#a3645f28b3df32308f135ec5b0aac0793">AddAlias</a> (<a class="el" href="namespacegcu.html#a4a6abffbefdd6abf047dca4e63b0bac5">TypeId</a> id, std::string TypeName)</td></tr>
<tr class="memitem:a0d3837f66eccae5ce73573ca95930dbc inherit pub_static_methods_classgcu_1_1Object"><td class="memItemLeft" align="right" valign="top">static <a class="el" href="classgcu_1_1Object.html">Object</a> * </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Object.html#a0d3837f66eccae5ce73573ca95930dbc">CreateObject</a> (const std::string &TypeName, <a class="el" href="classgcu_1_1Object.html">Object</a> *parent=NULL)</td></tr>
<tr class="memitem:a6038f7f7c0f58cd1aa12bd8237ac1024 inherit pub_static_methods_classgcu_1_1Object"><td class="memItemLeft" align="right" valign="top">static <a class="el" href="namespacegcu.html#a4a6abffbefdd6abf047dca4e63b0bac5">TypeId</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Object.html#a6038f7f7c0f58cd1aa12bd8237ac1024">GetTypeId</a> (const std::string &<a class="el" href="classgcu_1_1Object.html#ae19033807f4b7ee9321f308bb0ffd3b9">Name</a>)</td></tr>
<tr class="memitem:a9e57005d5129e341ce3dcd4d3c188eaf inherit pub_static_methods_classgcu_1_1Object"><td class="memItemLeft" align="right" valign="top">static std::string </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Object.html#a9e57005d5129e341ce3dcd4d3c188eaf">GetTypeName</a> (<a class="el" href="namespacegcu.html#a4a6abffbefdd6abf047dca4e63b0bac5">TypeId</a> Id)</td></tr>
<tr class="memitem:a47d2dd181c9934ab4671c526a251295f inherit pub_static_methods_classgcu_1_1Object"><td class="memItemLeft" align="right" valign="top">static void </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Object.html#a47d2dd181c9934ab4671c526a251295f">AddMenuCallback</a> (<a class="el" href="namespacegcu.html#a4a6abffbefdd6abf047dca4e63b0bac5">TypeId</a> Id, <a class="el" href="namespacegcu.html#aea85ee1e0ab66342f28448b2e7a9174d">BuildMenuCb</a> cb)</td></tr>
<tr class="memitem:a3eb4fd4787f224f5e7e3e5f8d1fc2abb inherit pub_static_methods_classgcu_1_1Object"><td class="memItemLeft" align="right" valign="top">static void </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Object.html#a3eb4fd4787f224f5e7e3e5f8d1fc2abb">AddRule</a> (<a class="el" href="namespacegcu.html#a4a6abffbefdd6abf047dca4e63b0bac5">TypeId</a> type1, <a class="el" href="namespacegcu.html#a19c49d12e7c0a96ae2be6c6c33c44b47">RuleId</a> rule, <a class="el" href="namespacegcu.html#a4a6abffbefdd6abf047dca4e63b0bac5">TypeId</a> type2)</td></tr>
<tr class="memitem:a13348c710f80100519c94d10dff3d0e0 inherit pub_static_methods_classgcu_1_1Object"><td class="memItemLeft" align="right" valign="top">static void </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Object.html#a13348c710f80100519c94d10dff3d0e0">AddRule</a> (const std::string &type1, <a class="el" href="namespacegcu.html#a19c49d12e7c0a96ae2be6c6c33c44b47">RuleId</a> rule, const std::string &type2)</td></tr>
<tr class="memitem:a96a3ea77a33f4721399f00e6b341cde2 inherit pub_static_methods_classgcu_1_1Object"><td class="memItemLeft" align="right" valign="top">static const std::set< <a class="el" href="namespacegcu.html#a4a6abffbefdd6abf047dca4e63b0bac5">TypeId</a> > & </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Object.html#a96a3ea77a33f4721399f00e6b341cde2">GetRules</a> (<a class="el" href="namespacegcu.html#a4a6abffbefdd6abf047dca4e63b0bac5">TypeId</a> type, <a class="el" href="namespacegcu.html#a19c49d12e7c0a96ae2be6c6c33c44b47">RuleId</a> rule)</td></tr>
<tr class="memitem:a44d44e134f05976140e8e4686b0cd936 inherit pub_static_methods_classgcu_1_1Object"><td class="memItemLeft" align="right" valign="top">static const std::set< <a class="el" href="namespacegcu.html#a4a6abffbefdd6abf047dca4e63b0bac5">TypeId</a> > & </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Object.html#a44d44e134f05976140e8e4686b0cd936">GetRules</a> (const std::string &type, <a class="el" href="namespacegcu.html#a19c49d12e7c0a96ae2be6c6c33c44b47">RuleId</a> rule)</td></tr>
<tr class="memitem:a8159c48a642f3410913e635e23d77f24 inherit pub_static_methods_classgcu_1_1Object"><td class="memItemLeft" align="right" valign="top">static void </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Object.html#a8159c48a642f3410913e635e23d77f24">SetCreationLabel</a> (<a class="el" href="namespacegcu.html#a4a6abffbefdd6abf047dca4e63b0bac5">TypeId</a> Id, std::string Label)</td></tr>
<tr class="memitem:a90c6d068fdbea8cffe8690f177b5c939 inherit pub_static_methods_classgcu_1_1Object"><td class="memItemLeft" align="right" valign="top">static const std::string & </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Object.html#a90c6d068fdbea8cffe8690f177b5c939">GetCreationLabel</a> (<a class="el" href="namespacegcu.html#a4a6abffbefdd6abf047dca4e63b0bac5">TypeId</a> Id)</td></tr>
<tr class="memitem:a591fb1674ad415be983b6810ef484326 inherit pub_static_methods_classgcu_1_1Object"><td class="memItemLeft" align="right" valign="top">static const std::string & </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Object.html#a591fb1674ad415be983b6810ef484326">GetCreationLabel</a> (const std::string &TypeName)</td></tr>
<tr class="memitem:a380275771a250b94785e43286525c74e inherit pub_static_methods_classgcu_1_1Object"><td class="memItemLeft" align="right" valign="top">static <a class="el" href="namespacegcu.html#af13348b065987fa4ca74ca0fb1ffa48e">SignalId</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Object.html#a380275771a250b94785e43286525c74e">CreateNewSignalId</a> ()</td></tr>
</table>
<a name="details" id="details"></a><h2>Detailed Description</h2>
<div class="textblock"><p>Used to represent atoms in a crystal. </p>
<p>Definition at line <a class="el" href="gcr_2atom_8h_source.html#l00045">45</a> of file <a class="el" href="gcr_2atom_8h_source.html">gcr/atom.h</a>.</p>
</div><h2>Constructor & Destructor Documentation</h2>
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<td class="memname">gcr::Atom::Atom </td>
<td>(</td>
<td class="paramname"></td><td>)</td>
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<p>The default constructor. Creates an atom with atomic number set to 0. </p>
<p>Reimplemented from <a class="el" href="classgcu_1_1Atom.html#aa8943d4fa17eef381fd5d6b2b16cb3c5">gcu::Atom</a>.</p>
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<td class="memname">virtual gcr::Atom::~Atom </td>
<td>(</td>
<td class="paramname"></td><td>)</td>
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<span class="mlabels"><span class="mlabel">virtual</span></span> </td>
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<p>The destructor of <a class="el" href="classgcr_1_1Atom.html">Atom</a>. It removes bonds but do not delete the associated <a class="el" href="classgcr_1_1Bond.html">Bond</a> instances. </p>
<p>Reimplemented from <a class="el" href="classgcu_1_1Atom.html#a6761fd5db008d0984e1fa056c385459b">gcu::Atom</a>.</p>
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<td class="memname">gcr::Atom::Atom </td>
<td>(</td>
<td class="paramtype">int </td>
<td class="paramname"><em>Z</em>, </td>
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<td class="paramkey"></td>
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<td class="paramtype">double </td>
<td class="paramname"><em>x</em>, </td>
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<td class="paramtype">double </td>
<td class="paramname"><em>y</em>, </td>
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<td class="paramtype">double </td>
<td class="paramname"><em>z</em> </td>
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<dl class="params"><dt>Parameters</dt><dd>
<table class="params">
<tr><td class="paramname">Z</td><td>the atomic number of the new atom. </td></tr>
<tr><td class="paramname">x</td><td>the x coordinate of the new atom. </td></tr>
<tr><td class="paramname">y</td><td>the y coordinate of the new atom. </td></tr>
<tr><td class="paramname">z</td><td>the z coordinate of the new atom.</td></tr>
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</dd>
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<p>Creates an atom. </p>
<p>Reimplemented from <a class="el" href="classgcu_1_1Atom.html#aae941cba7af49c8b1a1d1bfc635a36b8">gcu::Atom</a>.</p>
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<td class="memname">gcr::Atom::Atom </td>
<td>(</td>
<td class="paramtype"><a class="el" href="classgcr_1_1Atom.html">Atom</a> & </td>
<td class="paramname"><em>caAtom</em></td><td>)</td>
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<dl class="params"><dt>Parameters</dt><dd>
<table class="params">
<tr><td class="paramname">caAtom,:</td><td>the <a class="el" href="classgcr_1_1Atom.html">Atom</a> to duplicate.</td></tr>
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<p>Creates a new <a class="el" href="classgcr_1_1Atom.html">Atom</a> identical to caAtom. </p>
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<h2>Member Function Documentation</h2>
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<td class="memname">void gcr::Atom::Cleave </td>
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<p>Method used to cleave an atom. The inverse operation does not exist since the whole crystal must be recalculated after a change in the definition. </p>
<p>Definition at line <a class="el" href="gcr_2atom_8h_source.html#l00127">127</a> of file <a class="el" href="gcr_2atom_8h_source.html">gcr/atom.h</a>.</p>
<p>References <a class="el" href="gcr_2atom_8h_source.html#l00210">m_nCleave</a>.</p>
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<td class="memname">double gcr::Atom::Distance </td>
<td>(</td>
<td class="paramtype">double </td>
<td class="paramname"><em>x</em>, </td>
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<td class="paramtype">double </td>
<td class="paramname"><em>y</em>, </td>
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<td class="paramkey"></td>
<td></td>
<td class="paramtype">double </td>
<td class="paramname"><em>z</em>, </td>
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<td class="paramkey"></td>
<td></td>
<td class="paramtype">bool </td>
<td class="paramname"><em>bFixed</em> </td>
</tr>
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<td></td>
<td>)</td>
<td></td><td></td>
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<dl class="params"><dt>Parameters</dt><dd>
<table class="params">
<tr><td class="paramname">x,:</td><td>the x coordinate of the center. </td></tr>
<tr><td class="paramname">y,:</td><td>the y coordinate of the center. </td></tr>
<tr><td class="paramname">z,:</td><td>the z coordinate of the center. </td></tr>
<tr><td class="paramname">bFixed,:</td><td>tells if cleaved atoms are taken into account.</td></tr>
</table>
</dd>
</dl>
<p>This helper method is called when searching for the size of the crystal. When some cleavages are defined, the procedure cn take into account atoms cleaved to get the same position in the view for the cleaved crystal than for the whole crystal. If bFixed is true, all atoms are taken into account.</p>
<dl class="section return"><dt>Returns</dt><dd>the distance of the atom to the center of the view or 0 if bFixed is false and the atom cleaved. </dd></dl>
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<td class="memname">void gcr::Atom::GetColor </td>
<td>(</td>
<td class="paramtype">double * </td>
<td class="paramname"><em>red</em>, </td>
</tr>
<tr>
<td class="paramkey"></td>
<td></td>
<td class="paramtype">double * </td>
<td class="paramname"><em>green</em>, </td>
</tr>
<tr>
<td class="paramkey"></td>
<td></td>
<td class="paramtype">double * </td>
<td class="paramname"><em>blue</em>, </td>
</tr>
<tr>
<td class="paramkey"></td>
<td></td>
<td class="paramtype">double * </td>
<td class="paramname"><em>alpha</em> </td>
</tr>
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<td></td>
<td>)</td>
<td></td><td></td>
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<dl class="params"><dt>Parameters</dt><dd>
<table class="params">
<tr><td class="paramname">red,:</td><td>a pointer to the red component. </td></tr>
<tr><td class="paramname">green,:</td><td>a pointer to the green component. </td></tr>
<tr><td class="paramname">blue,:</td><td>a pointer to the blue component. </td></tr>
<tr><td class="paramname">alpha,:</td><td>a pointer to the alpha component.</td></tr>
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</dd>
</dl>
<p>Used to retrieve the color used in the representation of the atom. Mainly useful for user defined colors. </p>
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<td class="memname">std::string gcr::Atom::GetProperty </td>
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<td class="paramtype">unsigned </td>
<td class="paramname"><em>property</em></td><td>)</td>
<td> const</td>
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<dl class="params"><dt>Parameters</dt><dd>
<table class="params">
<tr><td class="paramname">property</td><td>the identity of the property as defined in <a class="el" href="objprops_8h.html">objprops.h</a>.</td></tr>
</table>
</dd>
</dl>
<p>Used by the <a class="el" href="classgcu_1_1Loader.html" title="class used to implement serialization engines.">gcu::Loader</a> mechanism to retrieve properties of atoms. </p>
<dl class="section return"><dt>Returns</dt><dd>the value of the property as a string. </dd></dl>
<p>Reimplemented from <a class="el" href="classgcu_1_1Atom.html#a759e64fd28f939c73a5130c49e876618">gcu::Atom</a>.</p>
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<td class="memname">const <a class="el" href="structGcuAtomicRadius.html">GcuAtomicRadius</a>& gcr::Atom::GetRadius </td>
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<td class="paramtype">void </td>
<td class="paramname"></td><td>)</td>
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<dl class="section return"><dt>Returns</dt><dd>the <a class="el" href="structGcuAtomicRadius.html">GcuAtomicRadius</a> containing the caracteristics of the atom radius. </dd></dl>
<p>Definition at line <a class="el" href="gcr_2atom_8h_source.html#l00157">157</a> of file <a class="el" href="gcr_2atom_8h_source.html">gcr/atom.h</a>.</p>
<p>References <a class="el" href="gcr_2atom_8h_source.html#l00204">m_Radius</a>.</p>
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<td class="memname">double gcr::Atom::GetSize </td>
<td>(</td>
<td class="paramname"></td><td>)</td>
<td></td>
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<dl class="section return"><dt>Returns</dt><dd>the value of the radius (in pm). </dd></dl>
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<td class="memname">bool gcr::Atom::HasCustomColor </td>
<td>(</td>
<td class="paramname"></td><td>)</td>
<td></td>
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<dl class="section return"><dt>Returns</dt><dd>: true if the color is user defined and false if it is the default color. </dd></dl>
<p>Definition at line <a class="el" href="gcr_2atom_8h_source.html#l00096">96</a> of file <a class="el" href="gcr_2atom_8h_source.html">gcr/atom.h</a>.</p>
<p>References <a class="el" href="gcr_2atom_8h_source.html#l00200">m_bCustomColor</a>.</p>
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<td class="memname">bool gcr::Atom::IsCleaved </td>
<td>(</td>
<td class="paramname"></td><td>)</td>
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<dl class="section return"><dt>Returns</dt><dd>true if the atom is cleaved by at least one cleavage or false if the atom is not cleaved at all. </dd></dl>
<p>Definition at line <a class="el" href="gcr_2atom_8h_source.html#l00165">165</a> of file <a class="el" href="gcr_2atom_8h_source.html">gcr/atom.h</a>.</p>
<p>References <a class="el" href="gcr_2atom_8h_source.html#l00210">m_nCleave</a>.</p>
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<td class="memname">virtual bool gcr::Atom::LoadNode </td>
<td>(</td>
<td class="paramtype">xmlNodePtr </td>
<td class="paramname"><em>node</em></td><td>)</td>
<td></td>
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<span class="mlabels"><span class="mlabel">virtual</span></span> </td>
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<dl class="params"><dt>Parameters</dt><dd>
<table class="params">
<tr><td class="paramname">node,:</td><td>a pointer to the xmlNode containing the serialized <a class="el" href="classgcr_1_1Atom.html">Atom</a>.</td></tr>
</table>
</dd>
</dl>
<p>Loads the color and the radius of the atom. </p>
<p>Reimplemented from <a class="el" href="classgcu_1_1Atom.html#a383a09c3d8bdbd0300bdc2b57b02e1ab">gcu::Atom</a>.</p>
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<td class="memname">bool gcr::Atom::operator== </td>
<td>(</td>
<td class="paramtype"><a class="el" href="classgcr_1_1Atom.html">Atom</a> & </td>
<td class="paramname"><em>caAtom</em></td><td>)</td>
<td></td>
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<dl class="params"><dt>Parameters</dt><dd>
<table class="params">
<tr><td class="paramname">caAtom,:</td><td>a <a class="el" href="classgcr_1_1Atom.html">Atom</a> instance. </td></tr>
</table>
</dd>
</dl>
<dl class="section return"><dt>Returns</dt><dd>true if the atoms are at the same position and false if their positions are different. </dd></dl>
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<td class="memname">double gcr::Atom::r </td>
<td>(</td>
<td class="paramname"></td><td>)</td>
<td></td>
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<dl class="section return"><dt>Returns</dt><dd>the value of the radius (in pm). </dd></dl>
<p>Definition at line <a class="el" href="gcr_2atom_8h_source.html#l00153">153</a> of file <a class="el" href="gcr_2atom_8h_source.html">gcr/atom.h</a>.</p>
<p>References <a class="el" href="gcr_2atom_8h_source.html#l00204">m_Radius</a>, <a class="el" href="chemistry_8h_source.html#l00122">GcuDimensionalValue::value</a>, and <a class="el" href="chemistry_8h_source.html#l00141">GcuAtomicRadius::value</a>.</p>
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<td class="memname">virtual bool gcr::Atom::SaveNode </td>
<td>(</td>
<td class="paramtype">xmlDocPtr </td>
<td class="paramname"><em>xml</em>, </td>
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<td class="paramkey"></td>
<td></td>
<td class="paramtype">xmlNodePtr </td>
<td class="paramname"><em>node</em> </td>
</tr>
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<td></td>
<td>)</td>
<td></td><td> const</td>
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<span class="mlabels"><span class="mlabel">virtual</span></span> </td>
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<dl class="params"><dt>Parameters</dt><dd>
<table class="params">
<tr><td class="paramname">xml,:</td><td>the xmlDoc used to save the document. </td></tr>
<tr><td class="paramname">node,:</td><td>a pointer to the xmlNode to which this <a class="el" href="classgcr_1_1Atom.html">Atom</a> is serialized.</td></tr>
</table>
</dd>
</dl>
<p>Saves the color and the radius of the atom. </p>
<p>Reimplemented from <a class="el" href="classgcu_1_1Atom.html#af8a3a91412c9a585f60d49fb6e49280e">gcu::Atom</a>.</p>
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<td class="memname">double gcr::Atom::ScalProd </td>
<td>(</td>
<td class="paramtype">int </td>
<td class="paramname"><em>h</em>, </td>
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<td class="paramkey"></td>
<td></td>
<td class="paramtype">int </td>
<td class="paramname"><em>k</em>, </td>
</tr>
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<td class="paramkey"></td>
<td></td>
<td class="paramtype">int </td>
<td class="paramname"><em>l</em> </td>
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<td></td>
<td>)</td>
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<dl class="params"><dt>Parameters</dt><dd>
<table class="params">
<tr><td class="paramname">h,:</td><td>the h Miller index of a plane. </td></tr>
<tr><td class="paramname">k,:</td><td>the k Miller index of a plane. </td></tr>
<tr><td class="paramname">l,:</td><td>the l Miller index of a plane.</td></tr>
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</dd>
</dl>
<dl class="section return"><dt>Returns</dt><dd>the product hx+ky+lz where x, y and z are the coordinates of the atom. This makes sense only if coordinates are related to the net and are not the cartesian coordinates. This method should not be called after <a class="el" href="classgcu_1_1Atom.html#a88f4565c7f8d1d8fd7575855655139bb">NetToCartesian()</a>. </dd></dl>
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<td class="memname">void gcr::Atom::SetColor </td>
<td>(</td>
<td class="paramtype">float </td>
<td class="paramname"><em>red</em>, </td>
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<td class="paramkey"></td>
<td></td>
<td class="paramtype">float </td>
<td class="paramname"><em>green</em>, </td>
</tr>
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<td></td>
<td class="paramtype">float </td>
<td class="paramname"><em>blue</em>, </td>
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<td></td>
<td class="paramtype">float </td>
<td class="paramname"><em>alpha</em> </td>
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<td>)</td>
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<dl class="params"><dt>Parameters</dt><dd>
<table class="params">
<tr><td class="paramname">red,:</td><td>the red component of the color. </td></tr>
<tr><td class="paramname">green,:</td><td>the green component of the color. </td></tr>
<tr><td class="paramname">blue,:</td><td>the blue component of the color. </td></tr>
<tr><td class="paramname">alpha,:</td><td>the alpha component of the color.</td></tr>
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<p>Sets a custom color to the atom. </p>
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<p>Gives the atom the default color. </p>
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<td>(</td>
<td class="paramtype">unsigned </td>
<td class="paramname"><em>property</em>, </td>
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<td class="paramkey"></td>
<td></td>
<td class="paramtype">char const * </td>
<td class="paramname"><em>value</em> </td>
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<td></td>
<td>)</td>
<td></td><td></td>
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<dl class="params"><dt>Parameters</dt><dd>
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<tr><td class="paramname">property</td><td>the identity of the property as defined in <a class="el" href="objprops_8h.html">objprops.h</a>. </td></tr>
<tr><td class="paramname">value</td><td>the value of the property as a string.</td></tr>
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</dd>
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<p>Used by the <a class="el" href="classgcu_1_1Loader.html" title="class used to implement serialization engines.">gcu::Loader</a> mechanism to load properties of atoms. </p>
<dl class="section return"><dt>Returns</dt><dd>true on success. </dd></dl>
<p>Reimplemented from <a class="el" href="classgcu_1_1Atom.html#ac9d2135007a4010d1e4ffffb9aec3227">gcu::Atom</a>.</p>
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<td class="memname">void gcr::Atom::SetRadius </td>
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<td class="paramtype">const <a class="el" href="structGcuAtomicRadius.html">GcuAtomicRadius</a> & </td>
<td class="paramname"><em>r</em></td><td>)</td>
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<dl class="params"><dt>Parameters</dt><dd>
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<tr><td class="paramname">r,:</td><td>a <a class="el" href="structGcuAtomicRadius.html">GcuAtomicRadius</a> with the caracteristics of the atom radius. </td></tr>
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<td class="memname">void gcr::Atom::SetSize </td>
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<td class="paramtype">double </td>
<td class="paramname"><em>r</em></td><td>)</td>
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<dl class="params"><dt>Parameters</dt><dd>
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<tr><td class="paramname">r,:</td><td>the new value of the atomic radius.</td></tr>
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</dd>
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<p>Sets the value of the radius (in pm). </p>
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<h2>Member Data Documentation</h2>
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<p>False if the color used is the default color and true if it is a user defined color. </p>
<p>Definition at line <a class="el" href="gcr_2atom_8h_source.html#l00200">200</a> of file <a class="el" href="gcr_2atom_8h_source.html">gcr/atom.h</a>.</p>
<p>Referenced by <a class="el" href="gcr_2atom_8h_source.html#l00096">HasCustomColor()</a>.</p>
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<p>The alpha component of the color of the sphere representing the atom. </p>
<p>Definition at line <a class="el" href="gcr_2atom_8h_source.html#l00196">196</a> of file <a class="el" href="gcr_2atom_8h_source.html">gcr/atom.h</a>.</p>
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<p>The blue component of the color of the sphere representing the atom. </p>
<p>Definition at line <a class="el" href="gcr_2atom_8h_source.html#l00184">184</a> of file <a class="el" href="gcr_2atom_8h_source.html">gcr/atom.h</a>.</p>
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<p>The green component of the color of the sphere representing the atom. </p>
<p>Definition at line <a class="el" href="gcr_2atom_8h_source.html#l00192">192</a> of file <a class="el" href="gcr_2atom_8h_source.html">gcr/atom.h</a>.</p>
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<td class="memname">float gcr::Atom::m_fRed</td>
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<p>The red component of the color of the sphere representing the atom. </p>
<p>Definition at line <a class="el" href="gcr_2atom_8h_source.html#l00188">188</a> of file <a class="el" href="gcr_2atom_8h_source.html">gcr/atom.h</a>.</p>
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<p>When cleavages (see <a class="el" href="classgcr_1_1Cleavage.html">gcr::Cleavage</a> class documentation) are defined, the atom might be cleaved. m_nCleave is the number of <a class="el" href="classgcr_1_1Cleavage.html">gcr::Cleavage</a> instances which remove the atom. If this member is not 0, the atom will not be displayed. </p>
<p>Definition at line <a class="el" href="gcr_2atom_8h_source.html#l00210">210</a> of file <a class="el" href="gcr_2atom_8h_source.html">gcr/atom.h</a>.</p>
<p>Referenced by <a class="el" href="gcr_2atom_8h_source.html#l00127">Cleave()</a>, and <a class="el" href="gcr_2atom_8h_source.html#l00165">IsCleaved()</a>.</p>
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<td class="memname"><a class="el" href="structGcuAtomicRadius.html">GcuAtomicRadius</a> gcr::Atom::m_Radius</td>
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<p>The <a class="el" href="structGcuAtomicRadius.html">GcuAtomicRadius</a> containing the radius caracteristics of the atom. </p>
<p>Definition at line <a class="el" href="gcr_2atom_8h_source.html#l00204">204</a> of file <a class="el" href="gcr_2atom_8h_source.html">gcr/atom.h</a>.</p>
<p>Referenced by <a class="el" href="gcr_2atom_8h_source.html#l00157">GetRadius()</a>, and <a class="el" href="gcr_2atom_8h_source.html#l00153">r()</a>.</p>
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<hr/>The documentation for this class was generated from the following file:<ul>
<li><a class="el" href="gcr_2atom_8h_source.html">gcr/atom.h</a></li>
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