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<div id="projectname">The Gnome Chemistry Utils
 <span id="projectnumber">0.14.2</span>
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<li class="navelem"><a class="el" href="namespacegcu.html">gcu</a></li><li class="navelem"><a class="el" href="classgcu_1_1Bond.html">Bond</a></li> </ul>
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<a href="#pub-methods">Public Member Functions</a> |
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<div class="title">gcu::Bond Class Reference</div> </div>
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<p><code>#include <<a class="el" href="gcu_2bond_8h_source.html">gcu/bond.h</a>></code></p>
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Inheritance diagram for gcu::Bond:</div>
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<img src="classgcu_1_1Bond.png" usemap="#gcu::Bond_map" alt=""/>
<map id="gcu::Bond_map" name="gcu::Bond_map">
<area href="classgcu_1_1Object.html" alt="gcu::Object" shape="rect" coords="43,0,119,24"/>
<area href="classgcp_1_1Bond.html" alt="gcp::Bond" shape="rect" coords="0,112,76,136"/>
<area href="classgcr_1_1Bond.html" alt="gcr::Bond" shape="rect" coords="86,112,162,136"/>
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<table class="memberdecls">
<tr class="heading"><td colspan="2"><h2><a name="pub-methods"></a>
Public Member Functions</h2></td></tr>
<tr class="memitem:aa4f971822cec7ebc2dd740a4edd7ea00"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Bond.html#aa4f971822cec7ebc2dd740a4edd7ea00">Bond</a> ()</td></tr>
<tr class="memitem:a869fdab83e6339334559e144e7f2c6ac"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Bond.html#a869fdab83e6339334559e144e7f2c6ac">Bond</a> (<a class="el" href="classgcu_1_1Atom.html">Atom</a> *first, <a class="el" href="classgcu_1_1Atom.html">Atom</a> *last, unsigned char order)</td></tr>
<tr class="memitem:a42e68562f9ed5db56e2248f5cfa570f0"><td class="memItemLeft" align="right" valign="top">virtual </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Bond.html#a42e68562f9ed5db56e2248f5cfa570f0">~Bond</a> ()</td></tr>
<tr class="memitem:a258bd137853571dfed1fb65e5b9a23b7"><td class="memItemLeft" align="right" valign="top">virtual <a class="el" href="classgcu_1_1Atom.html">Atom</a> * </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Bond.html#a258bd137853571dfed1fb65e5b9a23b7">GetAtom</a> (int which) const </td></tr>
<tr class="memitem:a78d842e897de3468e003900dcb4a8d23"><td class="memItemLeft" align="right" valign="top">virtual <a class="el" href="classgcu_1_1Atom.html">Atom</a> * </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Bond.html#a78d842e897de3468e003900dcb4a8d23">GetAtom</a> (<a class="el" href="classgcu_1_1Atom.html">Atom</a> *pAtom, int which=0) const </td></tr>
<tr class="memitem:a7f652f822ee853849ebc16784c62d4fe"><td class="memItemLeft" align="right" valign="top">virtual <a class="el" href="classgcu_1_1Atom.html">Atom</a> const * </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Bond.html#a7f652f822ee853849ebc16784c62d4fe">GetAtom</a> (<a class="el" href="classgcu_1_1Atom.html">Atom</a> const *pAtom, int which=0) const </td></tr>
<tr class="memitem:a34518464642cb9ba44b472f8ef6444b0"><td class="memItemLeft" align="right" valign="top">unsigned char </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Bond.html#a34518464642cb9ba44b472f8ef6444b0">GetOrder</a> () const </td></tr>
<tr class="memitem:aa3442e178bc0c5126e671093519c5c0e"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Bond.html#aa3442e178bc0c5126e671093519c5c0e">SetOrder</a> (unsigned char Order)</td></tr>
<tr class="memitem:a32ea64a60ece754c6b23ebea562bcc7f"><td class="memItemLeft" align="right" valign="top">virtual xmlNodePtr </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Bond.html#a32ea64a60ece754c6b23ebea562bcc7f">Save</a> (xmlDocPtr xml) const </td></tr>
<tr class="memitem:ae1bcca3ea3e234e33987df3a75fd69fa"><td class="memItemLeft" align="right" valign="top">virtual bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Bond.html#ae1bcca3ea3e234e33987df3a75fd69fa">Load</a> (xmlNodePtr node)</td></tr>
<tr class="memitem:ae4334fddde1b10a0b214e15ac3ace3a2"><td class="memItemLeft" align="right" valign="top">virtual void </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Bond.html#ae4334fddde1b10a0b214e15ac3ace3a2">IncOrder</a> (int n=1)</td></tr>
<tr class="memitem:a5c07dfc965d7ff0bcdf31d3cd984b3f5"><td class="memItemLeft" align="right" valign="top">virtual bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Bond.html#a5c07dfc965d7ff0bcdf31d3cd984b3f5">LoadNode</a> (xmlNodePtr node)</td></tr>
<tr class="memitem:a286b3771c349b417f6c4454ca19a737f"><td class="memItemLeft" align="right" valign="top">virtual bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Bond.html#a286b3771c349b417f6c4454ca19a737f">SaveNode</a> (xmlDocPtr xml, xmlNodePtr node) const </td></tr>
<tr class="memitem:a15d7c0d54ba3cb8e9d2886ff331bb1d1"><td class="memItemLeft" align="right" valign="top">virtual void </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Bond.html#a15d7c0d54ba3cb8e9d2886ff331bb1d1">Move</a> (double x, double y, double z=0.)</td></tr>
<tr class="memitem:a2d60a39d5316071e2f49a220348885cf"><td class="memItemLeft" align="right" valign="top">virtual void </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Bond.html#a2d60a39d5316071e2f49a220348885cf">Transform2D</a> (<a class="el" href="classgcu_1_1Matrix2D.html">Matrix2D</a> &m, double x, double y)</td></tr>
<tr class="memitem:a37bf95b6f996cd4201c3c8e2566a717a"><td class="memItemLeft" align="right" valign="top">bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Bond.html#a37bf95b6f996cd4201c3c8e2566a717a">SetProperty</a> (unsigned property, char const *value)</td></tr>
<tr class="memitem:a21346716e777dc738c25bbd78fd35d62"><td class="memItemLeft" align="right" valign="top">std::string </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Bond.html#a21346716e777dc738c25bbd78fd35d62">GetProperty</a> (unsigned property) const </td></tr>
<tr class="memitem:a53a6463cbee81f5deb05dd2dd12a3692"><td class="memItemLeft" align="right" valign="top">virtual void </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Bond.html#a53a6463cbee81f5deb05dd2dd12a3692">AddCycle</a> (<a class="el" href="classgcu_1_1Cycle.html">Cycle</a> *pCycle)</td></tr>
<tr class="memitem:ad03a409e582f602e9dc5cc6f767df379"><td class="memItemLeft" align="right" valign="top">virtual void </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Bond.html#ad03a409e582f602e9dc5cc6f767df379">RemoveCycle</a> (<a class="el" href="classgcu_1_1Cycle.html">Cycle</a> *pCycle)</td></tr>
<tr class="memitem:a1391f6a56f4bc037d6967e53f81b1893"><td class="memItemLeft" align="right" valign="top">virtual void </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Bond.html#a1391f6a56f4bc037d6967e53f81b1893">RemoveAllCycles</a> ()</td></tr>
<tr class="memitem:a75360621dc7035f97f351708e492772a"><td class="memItemLeft" align="right" valign="top">unsigned </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Bond.html#a75360621dc7035f97f351708e492772a">IsCyclic</a> ()</td></tr>
<tr class="memitem:a02c2683a36b514930cdaa313838f5ead"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classgcu_1_1Cycle.html">Cycle</a> * </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Bond.html#a02c2683a36b514930cdaa313838f5ead">GetFirstCycle</a> (std::list< <a class="el" href="classgcu_1_1Cycle.html">Cycle</a> * >::iterator &i, <a class="el" href="classgcu_1_1Cycle.html">Cycle</a> *pCycle)</td></tr>
<tr class="memitem:a9e1d6476780eba50ed468049661e0fe6"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classgcu_1_1Cycle.html">Cycle</a> * </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Bond.html#a9e1d6476780eba50ed468049661e0fe6">GetNextCycle</a> (std::list< <a class="el" href="classgcu_1_1Cycle.html">Cycle</a> * >::iterator &i, <a class="el" href="classgcu_1_1Cycle.html">Cycle</a> *pCycle)</td></tr>
<tr class="memitem:a7454f0f9d5d45d65637d14268570e53f"><td class="memItemLeft" align="right" valign="top">bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Bond.html#a7454f0f9d5d45d65637d14268570e53f">IsInCycle</a> (<a class="el" href="classgcu_1_1Cycle.html">Cycle</a> *pCycle)</td></tr>
<tr class="memitem:a37dfb2b3cd40f3d31cb9c665789debe4"><td class="memItemLeft" align="right" valign="top">double </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Bond.html#a37dfb2b3cd40f3d31cb9c665789debe4">Get2DLength</a> ()</td></tr>
<tr class="memitem:a03b8624cbc178a8ec4bcf9427988c464"><td class="memItemLeft" align="right" valign="top">double </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Bond.html#a03b8624cbc178a8ec4bcf9427988c464">GetAngle2DRad</a> (<a class="el" href="classgcu_1_1Atom.html">Atom</a> *pAtom)</td></tr>
<tr class="memitem:aa4e7dfe7534172a293836f00d0f20557"><td class="memItemLeft" align="right" valign="top">bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Bond.html#aa4e7dfe7534172a293836f00d0f20557">ReplaceAtom</a> (<a class="el" href="classgcu_1_1Atom.html">Atom</a> *oldAtom, <a class="el" href="classgcu_1_1Atom.html">Atom</a> *newAtom)</td></tr>
<tr class="memitem:a25e547136984cade24ca9d1a7db7b0b9"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Bond.html#a25e547136984cade24ca9d1a7db7b0b9">OnLoaded</a> ()</td></tr>
<tr class="memitem:a73fa8e10d0f906019ff18cec1724e194"><td class="memItemLeft" align="right" valign="top">std::string </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Bond.html#a73fa8e10d0f906019ff18cec1724e194">Name</a> ()</td></tr>
<tr class="inherit_header pub_methods_classgcu_1_1Object"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classgcu_1_1Object')"><img src="closed.png" alt="-"/> Public Member Functions inherited from <a class="el" href="classgcu_1_1Object.html">gcu::Object</a></td></tr>
<tr class="memitem:a6f15e766fdfb066008bd4b0779574549 inherit pub_methods_classgcu_1_1Object"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Object.html#a6f15e766fdfb066008bd4b0779574549">Object</a> (<a class="el" href="namespacegcu.html#a4a6abffbefdd6abf047dca4e63b0bac5">TypeId</a> Id=OtherType)</td></tr>
<tr class="memitem:a3e575300e517594b0c2c161d6e704352 inherit pub_methods_classgcu_1_1Object"><td class="memItemLeft" align="right" valign="top">virtual </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Object.html#a3e575300e517594b0c2c161d6e704352">~Object</a> ()</td></tr>
<tr class="memitem:a9c900a7a382cad4a995edbb10b8f179d inherit pub_methods_classgcu_1_1Object"><td class="memItemLeft" align="right" valign="top"><a class="el" href="namespacegcu.html#a4a6abffbefdd6abf047dca4e63b0bac5">TypeId</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Object.html#a9c900a7a382cad4a995edbb10b8f179d">GetType</a> () const </td></tr>
<tr class="memitem:ac45cdb13cf013066a3704054c9d06ed0 inherit pub_methods_classgcu_1_1Object"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Object.html#ac45cdb13cf013066a3704054c9d06ed0">SetId</a> (gchar const *Id)</td></tr>
<tr class="memitem:aef94f9435a51669a518b5a713f24e7ca inherit pub_methods_classgcu_1_1Object"><td class="memItemLeft" align="right" valign="top">char const * </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Object.html#aef94f9435a51669a518b5a713f24e7ca">GetId</a> () const </td></tr>
<tr class="memitem:ad054f1ae4f0cd697765aa4d2007521b2 inherit pub_methods_classgcu_1_1Object"><td class="memItemLeft" align="right" valign="top">virtual void </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Object.html#ad054f1ae4f0cd697765aa4d2007521b2">AddChild</a> (<a class="el" href="classgcu_1_1Object.html">Object</a> *object)</td></tr>
<tr class="memitem:adf610a8402000e9f9ae9ad0135c1d7da inherit pub_methods_classgcu_1_1Object"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classgcu_1_1Object.html">Object</a> * </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Object.html#adf610a8402000e9f9ae9ad0135c1d7da">GetMolecule</a> () const </td></tr>
<tr class="memitem:adaba7d20336b8036b6bfb7ef3884880a inherit pub_methods_classgcu_1_1Object"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classgcu_1_1Object.html">Object</a> * </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Object.html#adaba7d20336b8036b6bfb7ef3884880a">GetReaction</a> () const </td></tr>
<tr class="memitem:a841968632d00e5d879694ee84737225b inherit pub_methods_classgcu_1_1Object"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classgcu_1_1Object.html">Object</a> * </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Object.html#a841968632d00e5d879694ee84737225b">GetGroup</a> () const </td></tr>
<tr class="memitem:a274432165e22fa89a375eded192631db inherit pub_methods_classgcu_1_1Object"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classgcu_1_1Document.html">Document</a> * </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Object.html#a274432165e22fa89a375eded192631db">GetDocument</a> () const </td></tr>
<tr class="memitem:ab65facd99621938dfbd6330ccee1e9f7 inherit pub_methods_classgcu_1_1Object"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classgcu_1_1Application.html">Application</a> * </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Object.html#ab65facd99621938dfbd6330ccee1e9f7">GetApplication</a> () const </td></tr>
<tr class="memitem:a158be0361aaadca1d03fdb5b5d3089b2 inherit pub_methods_classgcu_1_1Object"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classgcu_1_1Object.html">Object</a> * </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Object.html#a158be0361aaadca1d03fdb5b5d3089b2">GetParentOfType</a> (<a class="el" href="namespacegcu.html#a4a6abffbefdd6abf047dca4e63b0bac5">TypeId</a> Id) const </td></tr>
<tr class="memitem:a026b22b02b09f8f9f535197f2d936c07 inherit pub_methods_classgcu_1_1Object"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classgcu_1_1Object.html">Object</a> * </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Object.html#a026b22b02b09f8f9f535197f2d936c07">GetChild</a> (const gchar *Id) const </td></tr>
<tr class="memitem:a5fe8cfbfe83645c292f8895aba4a91d0 inherit pub_methods_classgcu_1_1Object"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classgcu_1_1Object.html">Object</a> * </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Object.html#a5fe8cfbfe83645c292f8895aba4a91d0">GetFirstChild</a> (std::map< std::string, <a class="el" href="classgcu_1_1Object.html">Object</a> * >::iterator &i)</td></tr>
<tr class="memitem:a70ff8a33f72e424f3c39b3d0edbe9903 inherit pub_methods_classgcu_1_1Object"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classgcu_1_1Object.html">Object</a> * </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Object.html#a70ff8a33f72e424f3c39b3d0edbe9903">GetNextChild</a> (std::map< std::string, <a class="el" href="classgcu_1_1Object.html">Object</a> * >::iterator &i)</td></tr>
<tr class="memitem:ab70083d7ebb2cf32180c5383b5bb428c inherit pub_methods_classgcu_1_1Object"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classgcu_1_1Object.html">Object</a> * </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Object.html#ab70083d7ebb2cf32180c5383b5bb428c">GetDescendant</a> (const char *Id) const </td></tr>
<tr class="memitem:abacb2c2002726a3237ffbd0e50e3df52 inherit pub_methods_classgcu_1_1Object"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classgcu_1_1Object.html">Object</a> * </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Object.html#abacb2c2002726a3237ffbd0e50e3df52">GetParent</a> () const </td></tr>
<tr class="memitem:a0ffe1f48151c92f167eeec303277e45c inherit pub_methods_classgcu_1_1Object"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Object.html#a0ffe1f48151c92f167eeec303277e45c">SetParent</a> (<a class="el" href="classgcu_1_1Object.html">Object</a> *Parent)</td></tr>
<tr class="memitem:a7ae5e90dd76580aee332c6ef59e89298 inherit pub_methods_classgcu_1_1Object"><td class="memItemLeft" align="right" valign="top">virtual bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Object.html#a7ae5e90dd76580aee332c6ef59e89298">GetCoords</a> (double *x, double *y, double *z=NULL) const </td></tr>
<tr class="memitem:a07de41cb137a650b51920d6186fc82d7 inherit pub_methods_classgcu_1_1Object"><td class="memItemLeft" align="right" valign="top">bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Object.html#a07de41cb137a650b51920d6186fc82d7">SaveChildren</a> (xmlDocPtr xml, xmlNodePtr node) const </td></tr>
<tr class="memitem:a5f99b290d7e48c38738342dfc984865d inherit pub_methods_classgcu_1_1Object"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Object.html#a5f99b290d7e48c38738342dfc984865d">SaveId</a> (xmlNodePtr node) const </td></tr>
<tr class="memitem:ad533d866f1478a972a1896499e5659a5 inherit pub_methods_classgcu_1_1Object"><td class="memItemLeft" align="right" valign="top">xmlNodePtr </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Object.html#ad533d866f1478a972a1896499e5659a5">GetNodeByProp</a> (xmlNodePtr node, char const *Property, char const *Id)</td></tr>
<tr class="memitem:aa19f11cca83189a955f0a7bf2919562b inherit pub_methods_classgcu_1_1Object"><td class="memItemLeft" align="right" valign="top">xmlNodePtr </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Object.html#aa19f11cca83189a955f0a7bf2919562b">GetNextNodeByProp</a> (xmlNodePtr node, char const *Property, char const *Id)</td></tr>
<tr class="memitem:a4e8712098d673c958fb0c72488058f80 inherit pub_methods_classgcu_1_1Object"><td class="memItemLeft" align="right" valign="top">xmlNodePtr </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Object.html#a4e8712098d673c958fb0c72488058f80">GetNodeByName</a> (xmlNodePtr node, char const *<a class="el" href="classgcu_1_1Object.html#ae19033807f4b7ee9321f308bb0ffd3b9">Name</a>)</td></tr>
<tr class="memitem:a2dc10bf48d3ebfe86853cace21e9abf2 inherit pub_methods_classgcu_1_1Object"><td class="memItemLeft" align="right" valign="top">xmlNodePtr </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Object.html#a2dc10bf48d3ebfe86853cace21e9abf2">GetNextNodeByName</a> (xmlNodePtr node, char const *<a class="el" href="classgcu_1_1Object.html#ae19033807f4b7ee9321f308bb0ffd3b9">Name</a>)</td></tr>
<tr class="memitem:a28f682a2891b17ae57c5f346c95d6f50 inherit pub_methods_classgcu_1_1Object"><td class="memItemLeft" align="right" valign="top">bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Object.html#a28f682a2891b17ae57c5f346c95d6f50">HasChildren</a> () const </td></tr>
<tr class="memitem:a5e3d6fbdc8b10a9dbf43de2c052fff05 inherit pub_methods_classgcu_1_1Object"><td class="memItemLeft" align="right" valign="top">unsigned </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Object.html#a5e3d6fbdc8b10a9dbf43de2c052fff05">GetChildrenNumber</a> () const </td></tr>
<tr class="memitem:aa47c38061c6a2e51947d89c86fbae630 inherit pub_methods_classgcu_1_1Object"><td class="memItemLeft" align="right" valign="top">virtual <a class="el" href="classgcu_1_1Object.html">Object</a> * </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Object.html#aa47c38061c6a2e51947d89c86fbae630">GetAtomAt</a> (double x, double y, double z=0.)</td></tr>
<tr class="memitem:af1da4274cbbf0ca56bf8d380743d49e7 inherit pub_methods_classgcu_1_1Object"><td class="memItemLeft" align="right" valign="top">virtual bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Object.html#af1da4274cbbf0ca56bf8d380743d49e7">Build</a> (std::set< <a class="el" href="classgcu_1_1Object.html">Object</a> * > const &Children) throw (std::invalid_argument)</td></tr>
<tr class="memitem:aedeec6e6b66e1a35e6d2f3ef75c94a09 inherit pub_methods_classgcu_1_1Object"><td class="memItemLeft" align="right" valign="top">virtual double </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Object.html#aedeec6e6b66e1a35e6d2f3ef75c94a09">GetYAlign</a> ()</td></tr>
<tr class="memitem:acc55e92f84843058139d3a729aa6afcb inherit pub_methods_classgcu_1_1Object"><td class="memItemLeft" align="right" valign="top">virtual bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Object.html#acc55e92f84843058139d3a729aa6afcb">BuildContextualMenu</a> (<a class="el" href="classgcu_1_1UIManager.html">UIManager</a> *uim, <a class="el" href="classgcu_1_1Object.html">Object</a> *object, double x, double y)</td></tr>
<tr class="memitem:acf16b429a6875e5620fa8051446ef34c inherit pub_methods_classgcu_1_1Object"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Object.html#acf16b429a6875e5620fa8051446ef34c">EmitSignal</a> (<a class="el" href="namespacegcu.html#af13348b065987fa4ca74ca0fb1ffa48e">SignalId</a> Signal)</td></tr>
<tr class="memitem:a1ad183ecf7e5b5c42db100da03221e46 inherit pub_methods_classgcu_1_1Object"><td class="memItemLeft" align="right" valign="top">virtual bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Object.html#a1ad183ecf7e5b5c42db100da03221e46">OnSignal</a> (<a class="el" href="namespacegcu.html#af13348b065987fa4ca74ca0fb1ffa48e">SignalId</a> Signal, <a class="el" href="classgcu_1_1Object.html">Object</a> *Child)</td></tr>
<tr class="memitem:a8b4da97be50a4ceea941ab8aa8ece825 inherit pub_methods_classgcu_1_1Object"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Object.html#a8b4da97be50a4ceea941ab8aa8ece825">Lock</a> (bool state=true)</td></tr>
<tr class="memitem:a4094e3d8cf58a6f9de9cb6c6b6fed8c8 inherit pub_methods_classgcu_1_1Object"><td class="memItemLeft" align="right" valign="top">bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Object.html#a4094e3d8cf58a6f9de9cb6c6b6fed8c8">IsLocked</a> ()</td></tr>
<tr class="memitem:a79e87eb91afb57ebf188fdc3753cba7d inherit pub_methods_classgcu_1_1Object"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classgcu_1_1Object.html">Object</a> * </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Object.html#a79e87eb91afb57ebf188fdc3753cba7d">GetFirstLink</a> (std::set< <a class="el" href="classgcu_1_1Object.html">Object</a> * >::iterator &i)</td></tr>
<tr class="memitem:a61b227220c2b831b7196d2bd61201bdc inherit pub_methods_classgcu_1_1Object"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classgcu_1_1Object.html">Object</a> * </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Object.html#a61b227220c2b831b7196d2bd61201bdc">GetNextLink</a> (std::set< <a class="el" href="classgcu_1_1Object.html">Object</a> * >::iterator &i)</td></tr>
<tr class="memitem:a0173055f0ba60038d9d913b5f09bb354 inherit pub_methods_classgcu_1_1Object"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Object.html#a0173055f0ba60038d9d913b5f09bb354">Link</a> (<a class="el" href="classgcu_1_1Object.html">Object</a> *object)</td></tr>
<tr class="memitem:a606a257c41cd9cc177c98958fdf2ae3d inherit pub_methods_classgcu_1_1Object"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Object.html#a606a257c41cd9cc177c98958fdf2ae3d">Unlink</a> (<a class="el" href="classgcu_1_1Object.html">Object</a> *object)</td></tr>
<tr class="memitem:a786610ff1992e4aa1acff883b5479ec7 inherit pub_methods_classgcu_1_1Object"><td class="memItemLeft" align="right" valign="top">virtual void </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Object.html#a786610ff1992e4aa1acff883b5479ec7">OnUnlink</a> (<a class="el" href="classgcu_1_1Object.html">Object</a> *object)</td></tr>
<tr class="memitem:a97106b6ec695ac946d0a1d04293eef79 inherit pub_methods_classgcu_1_1Object"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Object.html#a97106b6ec695ac946d0a1d04293eef79">GetPossibleAncestorTypes</a> (std::set< <a class="el" href="namespacegcu.html#a4a6abffbefdd6abf047dca4e63b0bac5">TypeId</a> > &types) const </td></tr>
<tr class="memitem:a01ea0147ad675e139ddea7aaa2af503c inherit pub_methods_classgcu_1_1Object"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Object.html#a01ea0147ad675e139ddea7aaa2af503c">SetDirty</a> (bool dirty=true)</td></tr>
<tr class="memitem:adce3873de56ddf2abe7dba89e127fc06 inherit pub_methods_classgcu_1_1Object"><td class="memItemLeft" align="right" valign="top">virtual void </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Object.html#adce3873de56ddf2abe7dba89e127fc06">Clear</a> ()</td></tr>
<tr class="memitem:a373cd8efa4af70cdbc4a77086aee82c7 inherit pub_methods_classgcu_1_1Object"><td class="memItemLeft" align="right" valign="top">std::string </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Object.html#a373cd8efa4af70cdbc4a77086aee82c7">Identity</a> ()</td></tr>
<tr class="memitem:aceff810bb8bfad7f9a7152eef3dfe46e inherit pub_methods_classgcu_1_1Object"><td class="memItemLeft" align="right" valign="top">virtual char const * </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Object.html#aceff810bb8bfad7f9a7152eef3dfe46e">HasPropertiesDialog</a> () const </td></tr>
<tr class="memitem:a8f3da29ebe1fcc1534ac65b724f3582f inherit pub_methods_classgcu_1_1Object"><td class="memItemLeft" align="right" valign="top">virtual bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Object.html#a8f3da29ebe1fcc1534ac65b724f3582f">CanSelect</a> () const </td></tr>
<tr class="memitem:a67e3c8ee2104cd937aea48dabde7d319 inherit pub_methods_classgcu_1_1Object"><td class="memItemLeft" align="right" valign="top">virtual void </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Object.html#a67e3c8ee2104cd937aea48dabde7d319">NotifyEmpty</a> ()</td></tr>
<tr class="memitem:a45b59346e78b7a9927d379bb65df1710 inherit pub_methods_classgcu_1_1Object"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Object.html#a45b59346e78b7a9927d379bb65df1710">ShowPropertiesDialog</a> ()</td></tr>
<tr class="memitem:a71e2333cf4d47abdd272a8709361829f inherit pub_methods_classgcu_1_1Object"><td class="memItemLeft" align="right" valign="top">bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Object.html#a71e2333cf4d47abdd272a8709361829f">GetDirty</a> (void) const </td></tr>
</table><table class="memberdecls">
<tr class="heading"><td colspan="2"><h2><a name="pro-attribs"></a>
Protected Attributes</h2></td></tr>
<tr class="memitem:a9e7a0678e397de8485d8fb0283e44189"><td class="memItemLeft" align="right" valign="top">unsigned char </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Bond.html#a9e7a0678e397de8485d8fb0283e44189">m_order</a></td></tr>
<tr class="memitem:af614faae330ea00d759076238abea71d"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classgcu_1_1Atom.html">Atom</a> * </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Bond.html#af614faae330ea00d759076238abea71d">m_Begin</a></td></tr>
<tr class="memitem:a889d4abbc7e5a7cd2e46e088d4420eb6"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classgcu_1_1Atom.html">Atom</a> * </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Bond.html#a889d4abbc7e5a7cd2e46e088d4420eb6">m_End</a></td></tr>
<tr class="memitem:a90fbb5deb015bb9ad2c4984e4ee3d045"><td class="memItemLeft" align="right" valign="top">std::list< <a class="el" href="classgcu_1_1Cycle.html">Cycle</a> * > </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Bond.html#a90fbb5deb015bb9ad2c4984e4ee3d045">m_Cycles</a></td></tr>
</table><table class="memberdecls">
<tr class="heading"><td colspan="2"><h2><a name="inherited"></a>
Additional Inherited Members</h2></td></tr>
<tr class="inherit_header pub_static_methods_classgcu_1_1Object"><td colspan="2" onclick="javascript:toggleInherit('pub_static_methods_classgcu_1_1Object')"><img src="closed.png" alt="-"/> Static Public Member Functions inherited from <a class="el" href="classgcu_1_1Object.html">gcu::Object</a></td></tr>
<tr class="memitem:aea6734ca6bde8ae3e0788db43928f42e inherit pub_static_methods_classgcu_1_1Object"><td class="memItemLeft" align="right" valign="top">static <a class="el" href="namespacegcu.html#a4a6abffbefdd6abf047dca4e63b0bac5">TypeId</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Object.html#aea6734ca6bde8ae3e0788db43928f42e">AddType</a> (std::string TypeName, <a class="el" href="classgcu_1_1Object.html">Object</a> *(*CreateFunc)(), <a class="el" href="namespacegcu.html#a4a6abffbefdd6abf047dca4e63b0bac5">TypeId</a> id=OtherType)</td></tr>
<tr class="memitem:a3645f28b3df32308f135ec5b0aac0793 inherit pub_static_methods_classgcu_1_1Object"><td class="memItemLeft" align="right" valign="top">static void </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Object.html#a3645f28b3df32308f135ec5b0aac0793">AddAlias</a> (<a class="el" href="namespacegcu.html#a4a6abffbefdd6abf047dca4e63b0bac5">TypeId</a> id, std::string TypeName)</td></tr>
<tr class="memitem:a0d3837f66eccae5ce73573ca95930dbc inherit pub_static_methods_classgcu_1_1Object"><td class="memItemLeft" align="right" valign="top">static <a class="el" href="classgcu_1_1Object.html">Object</a> * </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Object.html#a0d3837f66eccae5ce73573ca95930dbc">CreateObject</a> (const std::string &TypeName, <a class="el" href="classgcu_1_1Object.html">Object</a> *parent=NULL)</td></tr>
<tr class="memitem:a6038f7f7c0f58cd1aa12bd8237ac1024 inherit pub_static_methods_classgcu_1_1Object"><td class="memItemLeft" align="right" valign="top">static <a class="el" href="namespacegcu.html#a4a6abffbefdd6abf047dca4e63b0bac5">TypeId</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Object.html#a6038f7f7c0f58cd1aa12bd8237ac1024">GetTypeId</a> (const std::string &<a class="el" href="classgcu_1_1Object.html#ae19033807f4b7ee9321f308bb0ffd3b9">Name</a>)</td></tr>
<tr class="memitem:a9e57005d5129e341ce3dcd4d3c188eaf inherit pub_static_methods_classgcu_1_1Object"><td class="memItemLeft" align="right" valign="top">static std::string </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Object.html#a9e57005d5129e341ce3dcd4d3c188eaf">GetTypeName</a> (<a class="el" href="namespacegcu.html#a4a6abffbefdd6abf047dca4e63b0bac5">TypeId</a> Id)</td></tr>
<tr class="memitem:a47d2dd181c9934ab4671c526a251295f inherit pub_static_methods_classgcu_1_1Object"><td class="memItemLeft" align="right" valign="top">static void </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Object.html#a47d2dd181c9934ab4671c526a251295f">AddMenuCallback</a> (<a class="el" href="namespacegcu.html#a4a6abffbefdd6abf047dca4e63b0bac5">TypeId</a> Id, <a class="el" href="namespacegcu.html#aea85ee1e0ab66342f28448b2e7a9174d">BuildMenuCb</a> cb)</td></tr>
<tr class="memitem:a3eb4fd4787f224f5e7e3e5f8d1fc2abb inherit pub_static_methods_classgcu_1_1Object"><td class="memItemLeft" align="right" valign="top">static void </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Object.html#a3eb4fd4787f224f5e7e3e5f8d1fc2abb">AddRule</a> (<a class="el" href="namespacegcu.html#a4a6abffbefdd6abf047dca4e63b0bac5">TypeId</a> type1, <a class="el" href="namespacegcu.html#a19c49d12e7c0a96ae2be6c6c33c44b47">RuleId</a> rule, <a class="el" href="namespacegcu.html#a4a6abffbefdd6abf047dca4e63b0bac5">TypeId</a> type2)</td></tr>
<tr class="memitem:a13348c710f80100519c94d10dff3d0e0 inherit pub_static_methods_classgcu_1_1Object"><td class="memItemLeft" align="right" valign="top">static void </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Object.html#a13348c710f80100519c94d10dff3d0e0">AddRule</a> (const std::string &type1, <a class="el" href="namespacegcu.html#a19c49d12e7c0a96ae2be6c6c33c44b47">RuleId</a> rule, const std::string &type2)</td></tr>
<tr class="memitem:a96a3ea77a33f4721399f00e6b341cde2 inherit pub_static_methods_classgcu_1_1Object"><td class="memItemLeft" align="right" valign="top">static const std::set< <a class="el" href="namespacegcu.html#a4a6abffbefdd6abf047dca4e63b0bac5">TypeId</a> > & </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Object.html#a96a3ea77a33f4721399f00e6b341cde2">GetRules</a> (<a class="el" href="namespacegcu.html#a4a6abffbefdd6abf047dca4e63b0bac5">TypeId</a> type, <a class="el" href="namespacegcu.html#a19c49d12e7c0a96ae2be6c6c33c44b47">RuleId</a> rule)</td></tr>
<tr class="memitem:a44d44e134f05976140e8e4686b0cd936 inherit pub_static_methods_classgcu_1_1Object"><td class="memItemLeft" align="right" valign="top">static const std::set< <a class="el" href="namespacegcu.html#a4a6abffbefdd6abf047dca4e63b0bac5">TypeId</a> > & </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Object.html#a44d44e134f05976140e8e4686b0cd936">GetRules</a> (const std::string &type, <a class="el" href="namespacegcu.html#a19c49d12e7c0a96ae2be6c6c33c44b47">RuleId</a> rule)</td></tr>
<tr class="memitem:a8159c48a642f3410913e635e23d77f24 inherit pub_static_methods_classgcu_1_1Object"><td class="memItemLeft" align="right" valign="top">static void </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Object.html#a8159c48a642f3410913e635e23d77f24">SetCreationLabel</a> (<a class="el" href="namespacegcu.html#a4a6abffbefdd6abf047dca4e63b0bac5">TypeId</a> Id, std::string Label)</td></tr>
<tr class="memitem:a90c6d068fdbea8cffe8690f177b5c939 inherit pub_static_methods_classgcu_1_1Object"><td class="memItemLeft" align="right" valign="top">static const std::string & </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Object.html#a90c6d068fdbea8cffe8690f177b5c939">GetCreationLabel</a> (<a class="el" href="namespacegcu.html#a4a6abffbefdd6abf047dca4e63b0bac5">TypeId</a> Id)</td></tr>
<tr class="memitem:a591fb1674ad415be983b6810ef484326 inherit pub_static_methods_classgcu_1_1Object"><td class="memItemLeft" align="right" valign="top">static const std::string & </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Object.html#a591fb1674ad415be983b6810ef484326">GetCreationLabel</a> (const std::string &TypeName)</td></tr>
<tr class="memitem:a380275771a250b94785e43286525c74e inherit pub_static_methods_classgcu_1_1Object"><td class="memItemLeft" align="right" valign="top">static <a class="el" href="namespacegcu.html#af13348b065987fa4ca74ca0fb1ffa48e">SignalId</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Object.html#a380275771a250b94785e43286525c74e">CreateNewSignalId</a> ()</td></tr>
<tr class="inherit_header pro_methods_classgcu_1_1Object"><td colspan="2" onclick="javascript:toggleInherit('pro_methods_classgcu_1_1Object')"><img src="closed.png" alt="-"/> Protected Member Functions inherited from <a class="el" href="classgcu_1_1Object.html">gcu::Object</a></td></tr>
<tr class="memitem:a98a9025b609f6ba46ab3b273792ee51e inherit pro_methods_classgcu_1_1Object"><td class="memItemLeft" align="right" valign="top">virtual <a class="el" href="classgcu_1_1Dialog.html">Dialog</a> * </td><td class="memItemRight" valign="bottom"><a class="el" href="classgcu_1_1Object.html#a98a9025b609f6ba46ab3b273792ee51e">BuildPropertiesDialog</a> ()</td></tr>
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<a name="details" id="details"></a><h2>Detailed Description</h2>
<div class="textblock"><p>This class is used to represent bonds. </p>
<p>Definition at line <a class="el" href="gcu_2bond_8h_source.html#l00042">42</a> of file <a class="el" href="gcu_2bond_8h_source.html">gcu/bond.h</a>.</p>
</div><h2>Constructor & Destructor Documentation</h2>
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<p>The default constructor. Creates a bond with order set to 0. </p>
<p>Reimplemented in <a class="el" href="classgcp_1_1Bond.html#a0b5206ff8f0460a8881156958cd1faa7">gcp::Bond</a>, and <a class="el" href="classgcr_1_1Bond.html#a1dac8cb316c26512ee2390d5345ac3cd">gcr::Bond</a>.</p>
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<td class="memname">gcu::Bond::Bond </td>
<td>(</td>
<td class="paramtype"><a class="el" href="classgcu_1_1Atom.html">Atom</a> * </td>
<td class="paramname"><em>first</em>, </td>
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<td class="paramkey"></td>
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<td class="paramtype"><a class="el" href="classgcu_1_1Atom.html">Atom</a> * </td>
<td class="paramname"><em>last</em>, </td>
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<td class="paramtype">unsigned char </td>
<td class="paramname"><em>order</em> </td>
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<dl class="params"><dt>Parameters</dt><dd>
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<tr><td class="paramname">first</td><td>a pointer to the first <a class="el" href="classgcu_1_1Atom.html">Atom</a> instance of the bond. </td></tr>
<tr><td class="paramname">last</td><td>a pointer to the last <a class="el" href="classgcu_1_1Atom.html">Atom</a> instance of the bond. </td></tr>
<tr><td class="paramname">order</td><td>the order of the new bond.</td></tr>
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</dd>
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<p>The distinction between first and last is important mostly for stereobonds. The <a class="el" href="classgcu_1_1Bond.html">Bond</a> instance is created and adds itself to the two atoms calling <a class="el" href="classgcu_1_1Atom.html#a374ed31f84f3400bf107c8fc5557acb3">Atom::AddBond</a>. </p>
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<td class="memname">virtual gcu::Bond::~Bond </td>
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<p>The destructor of <a class="el" href="classgcu_1_1Bond.html">Bond</a>. </p>
<p>Reimplemented in <a class="el" href="classgcp_1_1Bond.html#a2414adeb5456d1620b9165e5e0081f1c">gcp::Bond</a>, and <a class="el" href="classgcr_1_1Bond.html#a76d7374bcc8a57f6bc2e235615191c44">gcr::Bond</a>.</p>
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<h2>Member Function Documentation</h2>
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<td class="memname">virtual void gcu::Bond::AddCycle </td>
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<td class="paramtype"><a class="el" href="classgcu_1_1Cycle.html">Cycle</a> * </td>
<td class="paramname"><em>pCycle</em></td><td>)</td>
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<dl class="params"><dt>Parameters</dt><dd>
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<tr><td class="paramname">pCycle</td><td>a cycle to add to the list. </td></tr>
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</dd>
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<p>Reimplemented in <a class="el" href="classgcp_1_1Bond.html#a9b00148dde947306ca0c97daf7c84b03">gcp::Bond</a>.</p>
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<td class="memname">double gcu::Bond::Get2DLength </td>
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<dl class="section return"><dt>Returns</dt><dd>the length of the bond when projected to the xy plane. </dd></dl>
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<td class="memname">double gcu::Bond::GetAngle2DRad </td>
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<td class="paramtype"><a class="el" href="classgcu_1_1Atom.html">Atom</a> * </td>
<td class="paramname"><em>pAtom</em></td><td>)</td>
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<dl class="params"><dt>Parameters</dt><dd>
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<tr><td class="paramname">pAtom</td><td>one of the atoms of the bond.</td></tr>
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<dl class="section return"><dt>Returns</dt><dd>the direction of the bond starting from the atom. </dd></dl>
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<td class="memname">virtual <a class="el" href="classgcu_1_1Atom.html">Atom</a>* gcu::Bond::GetAtom </td>
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<td class="paramtype">int </td>
<td class="paramname"><em>which</em></td><td>)</td>
<td> const</td>
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<dl class="params"><dt>Parameters</dt><dd>
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<tr><td class="paramname">which</td><td>the index of the <a class="el" href="classgcu_1_1Atom.html">Atom</a> instance to be returned.</td></tr>
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<dl class="section return"><dt>Returns</dt><dd>a pointer to the <a class="el" href="classgcu_1_1Atom.html">Atom</a> instance: first <a class="el" href="classgcu_1_1Atom.html">Atom</a> if which is 0, last if which is 1 or NULL. </dd></dl>
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<td class="memname">virtual <a class="el" href="classgcu_1_1Atom.html">Atom</a>* gcu::Bond::GetAtom </td>
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<td class="paramtype"><a class="el" href="classgcu_1_1Atom.html">Atom</a> * </td>
<td class="paramname"><em>pAtom</em>, </td>
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<td class="paramtype">int </td>
<td class="paramname"><em>which</em> = <code>0</code> </td>
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<dl class="params"><dt>Parameters</dt><dd>
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<tr><td class="paramname">pAtom</td><td>a pointer to an <a class="el" href="classgcu_1_1Atom.html">Atom</a> instance. </td></tr>
<tr><td class="paramname">which</td><td>an index which might be used for multicentered bonds (not supported); the default value should always be used even if the implementation does not use it in this version.</td></tr>
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<dl class="section return"><dt>Returns</dt><dd>the last atom if pAtom is the first, the first if pAtom is the last or NULL if pAtom is not concerned by this <a class="el" href="classgcu_1_1Bond.html">Bond</a>. </dd></dl>
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<td class="memname">virtual <a class="el" href="classgcu_1_1Atom.html">Atom</a> const* gcu::Bond::GetAtom </td>
<td>(</td>
<td class="paramtype"><a class="el" href="classgcu_1_1Atom.html">Atom</a> const * </td>
<td class="paramname"><em>pAtom</em>, </td>
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<td class="paramtype">int </td>
<td class="paramname"><em>which</em> = <code>0</code> </td>
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<dl class="params"><dt>Parameters</dt><dd>
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<tr><td class="paramname">pAtom</td><td>a pointer to a constant <a class="el" href="classgcu_1_1Atom.html">Atom</a> instance. </td></tr>
<tr><td class="paramname">which</td><td>an index which might be used for multicentered bonds (not supported); the default value should always be used even if the implementation does not use it in this version.</td></tr>
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<p>The const version of the method. </p>
<dl class="section return"><dt>Returns</dt><dd>the last atom if pAtom is the first, the first if pAtom is the last or NULL if pAtom is not concerned by this <a class="el" href="classgcu_1_1Bond.html">Bond</a>. </dd></dl>
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<td class="memname"><a class="el" href="classgcu_1_1Cycle.html">Cycle</a>* gcu::Bond::GetFirstCycle </td>
<td>(</td>
<td class="paramtype">std::list< <a class="el" href="classgcu_1_1Cycle.html">Cycle</a> * >::iterator & </td>
<td class="paramname"><em>i</em>, </td>
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<td class="paramtype"><a class="el" href="classgcu_1_1Cycle.html">Cycle</a> * </td>
<td class="paramname"><em>pCycle</em> </td>
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<dl class="params"><dt>Parameters</dt><dd>
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<tr><td class="paramname">i</td><td>a C++ std::map iterator. </td></tr>
<tr><td class="paramname">pCycle</td><td>a cycle.</td></tr>
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<dl class="section return"><dt>Returns</dt><dd>the first cycle to which the bond belongs, excluding the one passed as second argument. </dd></dl>
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<td class="memname"><a class="el" href="classgcu_1_1Cycle.html">Cycle</a>* gcu::Bond::GetNextCycle </td>
<td>(</td>
<td class="paramtype">std::list< <a class="el" href="classgcu_1_1Cycle.html">Cycle</a> * >::iterator & </td>
<td class="paramname"><em>i</em>, </td>
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<td class="paramtype"><a class="el" href="classgcu_1_1Cycle.html">Cycle</a> * </td>
<td class="paramname"><em>pCycle</em> </td>
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<dl class="params"><dt>Parameters</dt><dd>
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<tr><td class="paramname">i</td><td>a C++ std::map iterator initialized by <a class="el" href="classgcu_1_1Bond.html#a02c2683a36b514930cdaa313838f5ead">Bond::GetFirstCycle</a>. </td></tr>
<tr><td class="paramname">pCycle</td><td>a cycle.</td></tr>
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<dl class="section return"><dt>Returns</dt><dd>the next cycle to which the bond belongs, excluding the one passed as second argument. </dd></dl>
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<dl class="section return"><dt>Returns</dt><dd>the <a class="el" href="classgcu_1_1Bond.html">Bond</a> order. </dd></dl>
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<td class="memname">std::string gcu::Bond::GetProperty </td>
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<td class="paramname"><em>property</em></td><td>)</td>
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<dl class="params"><dt>Parameters</dt><dd>
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<tr><td class="paramname">property</td><td>the identity of the property as defined in <a class="el" href="objprops_8h.html">objprops.h</a>.</td></tr>
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<p>Used by the <a class="el" href="classgcu_1_1Loader.html" title="class used to implement serialization engines.">gcu::Loader</a> mechanism to retrieve properties of bonds. </p>
<dl class="section return"><dt>Returns</dt><dd>the value of the property as a string. </dd></dl>
<p>Reimplemented from <a class="el" href="classgcu_1_1Object.html#a9f612121600c791abbee16bb539975d7">gcu::Object</a>.</p>
<p>Reimplemented in <a class="el" href="classgcp_1_1Bond.html#a453c1ce0cc507472268d1f8b68e44300">gcp::Bond</a>.</p>
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<td class="memname">virtual void gcu::Bond::IncOrder </td>
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<dl class="params"><dt>Parameters</dt><dd>
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<tr><td class="paramname">n</td><td>the increment to add to the bond order</td></tr>
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<p>If the resulting bond order is greater than 4, the remainder of the division by 4 is retained. </p>
<p>Reimplemented in <a class="el" href="classgcp_1_1Bond.html#a8b46a23538a24eb02b8e726d5565536b">gcp::Bond</a>.</p>
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<dl class="section return"><dt>Returns</dt><dd>the number of cycles to which the bond belongs. </dd></dl>
<p>Definition at line <a class="el" href="gcu_2bond_8h_source.html#l00183">183</a> of file <a class="el" href="gcu_2bond_8h_source.html">gcu/bond.h</a>.</p>
<p>References <a class="el" href="gcu_2bond_8h_source.html#l00258">m_Cycles</a>.</p>
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<td class="memname">bool gcu::Bond::IsInCycle </td>
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<td class="paramtype"><a class="el" href="classgcu_1_1Cycle.html">Cycle</a> * </td>
<td class="paramname"><em>pCycle</em></td><td>)</td>
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<dl class="params"><dt>Parameters</dt><dd>
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<tr><td class="paramname">pCycle</td><td>a cycle in which the bond might be.</td></tr>
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<dl class="section return"><dt>Returns</dt><dd>true if the bond is in the cycle. </dd></dl>
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<td class="memname">virtual bool gcu::Bond::Load </td>
<td>(</td>
<td class="paramtype">xmlNodePtr </td>
<td class="paramname"><em>node</em></td><td>)</td>
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<dl class="params"><dt>Parameters</dt><dd>
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<tr><td class="paramname">node</td><td>a pointer to the xmlNode containing the serialized <a class="el" href="classgcu_1_1Bond.html">Bond</a>.</td></tr>
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<p>Loads a bond from an xmlNode. </p>
<p>Reimplemented from <a class="el" href="classgcu_1_1Object.html#aa3ee33c25154d8e7bbe1e39de970c489">gcu::Object</a>.</p>
<p>Reimplemented in <a class="el" href="classgcr_1_1Bond.html#ac188dd995ef9ad60c3b4734a5cbeca91">gcr::Bond</a>.</p>
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<td class="memname">virtual bool gcu::Bond::LoadNode </td>
<td>(</td>
<td class="paramtype">xmlNodePtr </td>
<td class="paramname"><em>node</em></td><td>)</td>
<td></td>
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</td>
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<span class="mlabels"><span class="mlabel">virtual</span></span> </td>
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<dl class="params"><dt>Parameters</dt><dd>
<table class="params">
<tr><td class="paramname">node</td><td>a pointer to the xmlNode containing the serialized <a class="el" href="classgcu_1_1Bond.html">Bond</a>.</td></tr>
</table>
</dd>
</dl>
<p>This virtual method is called at the end of the <a class="el" href="classgcu_1_1Bond.html#ae1bcca3ea3e234e33987df3a75fd69fa">Bond::Load</a> method. The default behavior is to do nothing. It might be overrided for derived class when it is not convenient to override the <a class="el" href="classgcu_1_1Bond.html#ae1bcca3ea3e234e33987df3a75fd69fa">Bond::Load</a> method. </p>
<p>Reimplemented in <a class="el" href="classgcp_1_1Bond.html#add00d30f47a4b609a7e77472fa89b2bc">gcp::Bond</a>.</p>
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<td class="memname">virtual void gcu::Bond::Move </td>
<td>(</td>
<td class="paramtype">double </td>
<td class="paramname"><em>x</em>, </td>
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<td class="paramkey"></td>
<td></td>
<td class="paramtype">double </td>
<td class="paramname"><em>y</em>, </td>
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<td class="paramkey"></td>
<td></td>
<td class="paramtype">double </td>
<td class="paramname"><em>z</em> = <code>0.</code> </td>
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<tr>
<td></td>
<td>)</td>
<td></td><td></td>
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<dl class="params"><dt>Parameters</dt><dd>
<table class="params">
<tr><td class="paramname">x</td><td>the x component of the transation vector. </td></tr>
<tr><td class="paramname">y</td><td>the y component of the transation vector. </td></tr>
<tr><td class="paramname">z</td><td>the z component of the transation vector.</td></tr>
</table>
</dd>
</dl>
<p>Does nothing. Just a slight optimization to avoid execution of <a class="el" href="classgcu_1_1Object.html#af5505430c421604ff7e26e4414197fbc">Object::Move</a> </p>
<p>Reimplemented from <a class="el" href="classgcu_1_1Object.html#af5505430c421604ff7e26e4414197fbc">gcu::Object</a>.</p>
<p>Reimplemented in <a class="el" href="classgcp_1_1Bond.html#afda351941282758411c86c72bf176e01">gcp::Bond</a>, and <a class="el" href="classgcr_1_1Bond.html#a87c0e522a15f29e92db40c7f29d48c0b">gcr::Bond</a>.</p>
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<td class="memname">std::string gcu::Bond::Name </td>
<td>(</td>
<td class="paramname"></td><td>)</td>
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<span class="mlabels"><span class="mlabel">virtual</span></span> </td>
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<dl class="section return"><dt>Returns</dt><dd>the localized object generic name. </dd></dl>
<p>Reimplemented from <a class="el" href="classgcu_1_1Object.html#ae19033807f4b7ee9321f308bb0ffd3b9">gcu::Object</a>.</p>
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<td class="memname">void gcu::Bond::OnLoaded </td>
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<p>This method should be called when a bond has been fully loaded. </p>
<p>Reimplemented from <a class="el" href="classgcu_1_1Object.html#af972c30c9990923c34c54754654c3e72">gcu::Object</a>.</p>
<p>Reimplemented in <a class="el" href="classgcp_1_1Bond.html#a12cd87134dfaf4230f47f6f9126b8973">gcp::Bond</a>.</p>
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<td class="memname">virtual void gcu::Bond::RemoveAllCycles </td>
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<p>Clears the bond cycles list. </p>
<p>Reimplemented in <a class="el" href="classgcp_1_1Bond.html#ae46d9c3524f1a8a4fb4910ff9c8df0dc">gcp::Bond</a>.</p>
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<td class="memname">virtual void gcu::Bond::RemoveCycle </td>
<td>(</td>
<td class="paramtype"><a class="el" href="classgcu_1_1Cycle.html">Cycle</a> * </td>
<td class="paramname"><em>pCycle</em></td><td>)</td>
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<dl class="params"><dt>Parameters</dt><dd>
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<tr><td class="paramname">pCycle</td><td>a cycle to remove from the list. </td></tr>
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</dd>
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<p>Reimplemented in <a class="el" href="classgcp_1_1Bond.html#aac38d7757df34e9e07c4bd91c9564855">gcp::Bond</a>.</p>
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<td class="memname">bool gcu::Bond::ReplaceAtom </td>
<td>(</td>
<td class="paramtype"><a class="el" href="classgcu_1_1Atom.html">Atom</a> * </td>
<td class="paramname"><em>oldAtom</em>, </td>
</tr>
<tr>
<td class="paramkey"></td>
<td></td>
<td class="paramtype"><a class="el" href="classgcu_1_1Atom.html">Atom</a> * </td>
<td class="paramname"><em>newAtom</em> </td>
</tr>
<tr>
<td></td>
<td>)</td>
<td></td><td></td>
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<dl class="params"><dt>Parameters</dt><dd>
<table class="params">
<tr><td class="paramname">oldAtom</td><td>the atom to replace. </td></tr>
<tr><td class="paramname">newAtom</td><td>the new atom.</td></tr>
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</dd>
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<p>To sucess, this needs that the new atom can accept all the bonds from the old one. </p>
<dl class="section return"><dt>Returns</dt><dd>true on success. </dd></dl>
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<td class="memname">virtual xmlNodePtr gcu::Bond::Save </td>
<td>(</td>
<td class="paramtype">xmlDocPtr </td>
<td class="paramname"><em>xml</em></td><td>)</td>
<td> const</td>
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<dl class="params"><dt>Parameters</dt><dd>
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<tr><td class="paramname">xml</td><td>the xmlDoc used to save the document. </td></tr>
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</dd>
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<dl class="section return"><dt>Returns</dt><dd>a pointer to the xmlNode representing this <a class="el" href="classgcu_1_1Bond.html">Bond</a> or NULL if an error occured. </dd></dl>
<p>Reimplemented from <a class="el" href="classgcu_1_1Object.html#aad462441e79fbd93e158f8294a198d11">gcu::Object</a>.</p>
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<td class="memname">virtual bool gcu::Bond::SaveNode </td>
<td>(</td>
<td class="paramtype">xmlDocPtr </td>
<td class="paramname"><em>xml</em>, </td>
</tr>
<tr>
<td class="paramkey"></td>
<td></td>
<td class="paramtype">xmlNodePtr </td>
<td class="paramname"><em>node</em> </td>
</tr>
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<td></td>
<td>)</td>
<td></td><td> const</td>
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<dl class="params"><dt>Parameters</dt><dd>
<table class="params">
<tr><td class="paramname">xml</td><td>the xmlDoc used to save the document. </td></tr>
<tr><td class="paramname">node</td><td>a pointer to the xmlNode to which this <a class="el" href="classgcu_1_1Bond.html">Bond</a> is serialized.</td></tr>
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</dd>
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<p>This virtual method is called at the end of the <a class="el" href="classgcu_1_1Bond.html#a32ea64a60ece754c6b23ebea562bcc7f">Bond::Save</a> method. The default behavior is to do nothing. It might be overrided for derived class when it is not convenient to override the <a class="el" href="classgcu_1_1Bond.html#a32ea64a60ece754c6b23ebea562bcc7f">Bond::Save</a> method. </p>
<p>Reimplemented in <a class="el" href="classgcp_1_1Bond.html#ace12bb96a952939c5e4adc12c17afc48">gcp::Bond</a>.</p>
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<td class="memname">void gcu::Bond::SetOrder </td>
<td>(</td>
<td class="paramtype">unsigned char </td>
<td class="paramname"><em>Order</em></td><td>)</td>
<td></td>
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<dl class="params"><dt>Parameters</dt><dd>
<table class="params">
<tr><td class="paramname">Order</td><td>the new bond order.</td></tr>
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</dd>
</dl>
<p>The value used is not checked. Should be a significant value (1 to 3, exceptionally 4). </p>
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<td class="memname">bool gcu::Bond::SetProperty </td>
<td>(</td>
<td class="paramtype">unsigned </td>
<td class="paramname"><em>property</em>, </td>
</tr>
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<td class="paramkey"></td>
<td></td>
<td class="paramtype">char const * </td>
<td class="paramname"><em>value</em> </td>
</tr>
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<td></td>
<td>)</td>
<td></td><td></td>
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<dl class="params"><dt>Parameters</dt><dd>
<table class="params">
<tr><td class="paramname">property</td><td>the identity of the property as defined in <a class="el" href="objprops_8h.html">objprops.h</a>. </td></tr>
<tr><td class="paramname">value</td><td>the value of the property as a string.</td></tr>
</table>
</dd>
</dl>
<p>Used by the <a class="el" href="classgcu_1_1Loader.html" title="class used to implement serialization engines.">gcu::Loader</a> mechanism to load properties of bonds. </p>
<dl class="section return"><dt>Returns</dt><dd>true on success. </dd></dl>
<p>Reimplemented from <a class="el" href="classgcu_1_1Object.html#a47862fe83b1c3739ee37b8af81550644">gcu::Object</a>.</p>
<p>Reimplemented in <a class="el" href="classgcp_1_1Bond.html#a42351189a42ff109ba72cffb68741431">gcp::Bond</a>.</p>
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<td class="memname">virtual void gcu::Bond::Transform2D </td>
<td>(</td>
<td class="paramtype"><a class="el" href="classgcu_1_1Matrix2D.html">Matrix2D</a> & </td>
<td class="paramname"><em>m</em>, </td>
</tr>
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<td class="paramkey"></td>
<td></td>
<td class="paramtype">double </td>
<td class="paramname"><em>x</em>, </td>
</tr>
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<td class="paramkey"></td>
<td></td>
<td class="paramtype">double </td>
<td class="paramname"><em>y</em> </td>
</tr>
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<td></td>
<td>)</td>
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<dl class="params"><dt>Parameters</dt><dd>
<table class="params">
<tr><td class="paramname">m</td><td>the 2D <a class="el" href="classgcu_1_1Matrix.html">Matrix</a> of the transformation. </td></tr>
<tr><td class="paramname">x</td><td>the x component of the center of the transformation. </td></tr>
<tr><td class="paramname">y</td><td>the y component of the center of the transformation.</td></tr>
</table>
</dd>
</dl>
<p>Does nothing. Just a slight optimization to avoid execution of <a class="el" href="classgcu_1_1Object.html#a69ad6edf7d50950b036f09d9ff86f849">Object::Transform2D</a> </p>
<p>Reimplemented from <a class="el" href="classgcu_1_1Object.html#a69ad6edf7d50950b036f09d9ff86f849">gcu::Object</a>.</p>
<p>Reimplemented in <a class="el" href="classgcp_1_1Bond.html#abe79a5330eb9a97a9a7425a69cc241f3">gcp::Bond</a>.</p>
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<h2>Member Data Documentation</h2>
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<td class="memname"><a class="el" href="classgcu_1_1Atom.html">Atom</a>* gcu::Bond::m_Begin</td>
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<p>A pointer to the first <a class="el" href="classgcu_1_1Atom.html">Atom</a> instance of the <a class="el" href="classgcu_1_1Bond.html">Bond</a>. </p>
<p>Definition at line <a class="el" href="gcu_2bond_8h_source.html#l00249">249</a> of file <a class="el" href="gcu_2bond_8h_source.html">gcu/bond.h</a>.</p>
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<td class="memname">std::list<<a class="el" href="classgcu_1_1Cycle.html">Cycle</a>*> gcu::Bond::m_Cycles</td>
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<p>The <a class="el" href="classgcu_1_1Cycle.html">gcu::Cycle</a> instnces to which the bond pertains. </p>
<p>Definition at line <a class="el" href="gcu_2bond_8h_source.html#l00258">258</a> of file <a class="el" href="gcu_2bond_8h_source.html">gcu/bond.h</a>.</p>
<p>Referenced by <a class="el" href="gcu_2bond_8h_source.html#l00183">IsCyclic()</a>.</p>
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<td class="memname"><a class="el" href="classgcu_1_1Atom.html">Atom</a>* gcu::Bond::m_End</td>
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<p>A pointer to the last <a class="el" href="classgcu_1_1Atom.html">Atom</a> instance of the <a class="el" href="classgcu_1_1Bond.html">Bond</a>. </p>
<p>Definition at line <a class="el" href="gcu_2bond_8h_source.html#l00253">253</a> of file <a class="el" href="gcu_2bond_8h_source.html">gcu/bond.h</a>.</p>
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<td class="memname">unsigned char gcu::Bond::m_order</td>
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<p>The order of the bond. </p>
<p>Definition at line <a class="el" href="gcu_2bond_8h_source.html#l00245">245</a> of file <a class="el" href="gcu_2bond_8h_source.html">gcu/bond.h</a>.</p>
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<hr/>The documentation for this class was generated from the following file:<ul>
<li><a class="el" href="gcu_2bond_8h_source.html">gcu/bond.h</a></li>
</ul>
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