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<div id="projectname">The Gnome Chemistry Utils
 <span id="projectnumber">0.14.2</span>
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<a href="gcu_2document_8h.html">Go to the documentation of this file.</a><div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno"> 1</span> <span class="comment">// -*- C++ -*-</span></div>
<div class="line"><a name="l00002"></a><span class="lineno"> 2</span> </div>
<div class="line"><a name="l00003"></a><span class="lineno"> 3</span> <span class="comment">/*</span></div>
<div class="line"><a name="l00004"></a><span class="lineno"> 4</span> <span class="comment"> * Gnome Chemistry Utils</span></div>
<div class="line"><a name="l00005"></a><span class="lineno"> 5</span> <span class="comment"> * gcu/document.h</span></div>
<div class="line"><a name="l00006"></a><span class="lineno"> 6</span> <span class="comment"> *</span></div>
<div class="line"><a name="l00007"></a><span class="lineno"> 7</span> <span class="comment"> * Copyright (C) 2004-2011 Jean Bréfort <jean.brefort@normalesup.org></span></div>
<div class="line"><a name="l00008"></a><span class="lineno"> 8</span> <span class="comment"> *</span></div>
<div class="line"><a name="l00009"></a><span class="lineno"> 9</span> <span class="comment"> * This program is free software; you can redistribute it and/or</span></div>
<div class="line"><a name="l00010"></a><span class="lineno"> 10</span> <span class="comment"> * modify it under the terms of the GNU General Public License as</span></div>
<div class="line"><a name="l00011"></a><span class="lineno"> 11</span> <span class="comment"> * published by the Free Software Foundation; either version 3 of the</span></div>
<div class="line"><a name="l00012"></a><span class="lineno"> 12</span> <span class="comment"> * License, or (at your option) any later version.</span></div>
<div class="line"><a name="l00013"></a><span class="lineno"> 13</span> <span class="comment"> *</span></div>
<div class="line"><a name="l00014"></a><span class="lineno"> 14</span> <span class="comment"> * This program is distributed in the hope that it will be useful,</span></div>
<div class="line"><a name="l00015"></a><span class="lineno"> 15</span> <span class="comment"> * but WITHOUT ANY WARRANTY; without even the implied warranty of</span></div>
<div class="line"><a name="l00016"></a><span class="lineno"> 16</span> <span class="comment"> * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the</span></div>
<div class="line"><a name="l00017"></a><span class="lineno"> 17</span> <span class="comment"> * GNU General Public License for more details.</span></div>
<div class="line"><a name="l00018"></a><span class="lineno"> 18</span> <span class="comment"> *</span></div>
<div class="line"><a name="l00019"></a><span class="lineno"> 19</span> <span class="comment"> * You should have received a copy of the GNU General Public License</span></div>
<div class="line"><a name="l00020"></a><span class="lineno"> 20</span> <span class="comment"> * along with this program; if not, write to the Free Software</span></div>
<div class="line"><a name="l00021"></a><span class="lineno"> 21</span> <span class="comment"> * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301</span></div>
<div class="line"><a name="l00022"></a><span class="lineno"> 22</span> <span class="comment"> * USA</span></div>
<div class="line"><a name="l00023"></a><span class="lineno"> 23</span> <span class="comment"> */</span></div>
<div class="line"><a name="l00024"></a><span class="lineno"> 24</span> </div>
<div class="line"><a name="l00025"></a><span class="lineno"> 25</span> </div>
<div class="line"><a name="l00026"></a><span class="lineno"> 26</span> <span class="preprocessor">#ifndef GCU_DOCUMENT_H</span></div>
<div class="line"><a name="l00027"></a><span class="lineno"> 27</span> <span class="preprocessor"></span><span class="preprocessor">#define GCU_DOCUMENT_H</span></div>
<div class="line"><a name="l00028"></a><span class="lineno"> 28</span> <span class="preprocessor"></span></div>
<div class="line"><a name="l00029"></a><span class="lineno"> 29</span> <span class="preprocessor">#include <<a class="code" href="object_8h.html">gcu/object.h</a>></span></div>
<div class="line"><a name="l00030"></a><span class="lineno"> 30</span> <span class="preprocessor">#include <<a class="code" href="dialog-owner_8h.html">gcu/dialog-owner.h</a>></span></div>
<div class="line"><a name="l00031"></a><span class="lineno"> 31</span> <span class="preprocessor">#include <<a class="code" href="macros_8h.html">gcu/macros.h</a>></span></div>
<div class="line"><a name="l00032"></a><span class="lineno"> 32</span> <span class="preprocessor">#include <<a class="code" href="loader-error_8h.html">gcu/loader-error.h</a>></span></div>
<div class="line"><a name="l00033"></a><span class="lineno"> 33</span> <span class="preprocessor">#include <string></span></div>
<div class="line"><a name="l00034"></a><span class="lineno"> 34</span> <span class="preprocessor">#include <set></span></div>
<div class="line"><a name="l00035"></a><span class="lineno"> 35</span> </div>
<div class="line"><a name="l00037"></a><span class="lineno"> 37</span> <span class="keyword">namespace </span>gcu</div>
<div class="line"><a name="l00038"></a><span class="lineno"> 38</span> {</div>
<div class="line"><a name="l00039"></a><span class="lineno"> 39</span> </div>
<div class="line"><a name="l00040"></a><span class="lineno"> 40</span> <span class="keyword">class </span>Application;</div>
<div class="line"><a name="l00041"></a><span class="lineno"> 41</span> <span class="keyword">class </span>Dialog;</div>
<div class="line"><a name="l00042"></a><span class="lineno"> 42</span> <span class="keyword">class </span>Molecule;</div>
<div class="line"><a name="l00043"></a><span class="lineno"> 43</span> <span class="keyword">class </span>Residue;</div>
<div class="line"><a name="l00044"></a><span class="lineno"> 44</span> <span class="keyword">class </span>Window;</div>
<div class="line"><a name="l00045"></a><span class="lineno"> 45</span> </div>
<div class="line"><a name="l00049"></a><span class="lineno"><a class="code" href="namespacegcu.html#a8b2b5ab4008c10355f1ca636bb1a3efa"> 49</a></span> <span class="keyword">typedef</span> <span class="keyword">enum</span> {</div>
<div class="line"><a name="l00051"></a><span class="lineno"><a class="code" href="namespacegcu.html#a8b2b5ab4008c10355f1ca636bb1a3efaabe52c733de0a7f087f84a8aa1894cfcb"> 51</a></span>  <a class="code" href="namespacegcu.html#a8b2b5ab4008c10355f1ca636bb1a3efaabe52c733de0a7f087f84a8aa1894cfcb">ActionException</a>,</div>
<div class="line"><a name="l00053"></a><span class="lineno"><a class="code" href="namespacegcu.html#a8b2b5ab4008c10355f1ca636bb1a3efaa2a0d1e02b3c5a729590345fc61c8bd90"> 53</a></span>  <a class="code" href="namespacegcu.html#a8b2b5ab4008c10355f1ca636bb1a3efaa2a0d1e02b3c5a729590345fc61c8bd90">ActionDelete</a>,</div>
<div class="line"><a name="l00055"></a><span class="lineno"><a class="code" href="namespacegcu.html#a8b2b5ab4008c10355f1ca636bb1a3efaa373b3a199b04a854ef2c628fb13650f9"> 55</a></span>  <a class="code" href="namespacegcu.html#a8b2b5ab4008c10355f1ca636bb1a3efaa373b3a199b04a854ef2c628fb13650f9">ActionIgnore</a></div>
<div class="line"><a name="l00056"></a><span class="lineno"> 56</span> } <a class="code" href="namespacegcu.html#a8b2b5ab4008c10355f1ca636bb1a3efa">Action</a>;</div>
<div class="line"><a name="l00057"></a><span class="lineno"> 57</span> </div>
<div class="line"><a name="l00061"></a><span class="lineno"><a class="code" href="classgcu_1_1Document.html"> 61</a></span> <span class="keyword">class </span><a class="code" href="classgcu_1_1Document.html">Document</a>: <span class="keyword">public</span> <a class="code" href="classgcu_1_1Object.html">Object</a>, <span class="keyword">virtual</span> <span class="keyword">public</span> <a class="code" href="classgcu_1_1DialogOwner.html">DialogOwner</a></div>
<div class="line"><a name="l00062"></a><span class="lineno"> 62</span> {</div>
<div class="line"><a name="l00063"></a><span class="lineno"> 63</span> <span class="keyword">friend</span> <span class="keyword">class </span><a class="code" href="classgcu_1_1Application.html">Application</a>;</div>
<div class="line"><a name="l00064"></a><span class="lineno"> 64</span> <span class="keyword">friend</span> <span class="keyword">class </span><a class="code" href="classgcu_1_1Object.html">Object</a>;</div>
<div class="line"><a name="l00065"></a><span class="lineno"> 65</span> <span class="keyword">friend</span> <span class="keyword">class </span><a class="code" href="classgcu_1_1Dialog.html">Dialog</a>;</div>
<div class="line"><a name="l00066"></a><span class="lineno"> 66</span> </div>
<div class="line"><a name="l00067"></a><span class="lineno"> 67</span> <span class="keyword">private</span>:</div>
<div class="line"><a name="l00068"></a><span class="lineno"> 68</span> <span class="keyword">class </span>PendingTarget</div>
<div class="line"><a name="l00069"></a><span class="lineno"> 69</span> {</div>
<div class="line"><a name="l00070"></a><span class="lineno"> 70</span> <span class="keyword">public</span>:</div>
<div class="line"><a name="l00071"></a><span class="lineno"> 71</span>  <a class="code" href="classgcu_1_1Object.html">Object</a> *parent;</div>
<div class="line"><a name="l00072"></a><span class="lineno"> 72</span>  <a class="code" href="classgcu_1_1Object.html">Object</a> *owner;</div>
<div class="line"><a name="l00073"></a><span class="lineno"> 73</span>  <a class="code" href="classgcu_1_1Object.html">Object</a> **target;</div>
<div class="line"><a name="l00074"></a><span class="lineno"> 74</span>  <a class="code" href="namespacegcu.html#a8b2b5ab4008c10355f1ca636bb1a3efa">Action</a> action;</div>
<div class="line"><a name="l00075"></a><span class="lineno"> 75</span> };</div>
<div class="line"><a name="l00076"></a><span class="lineno"> 76</span> </div>
<div class="line"><a name="l00077"></a><span class="lineno"> 77</span> <span class="keyword">public</span>:</div>
<div class="line"><a name="l00083"></a><span class="lineno"> 83</span>  <a class="code" href="classgcu_1_1Document.html#a6876553fd0b92c675c0abbe075ed94f5">Document</a> (<a class="code" href="classgcu_1_1Application.html">Application</a> *App = NULL);</div>
<div class="line"><a name="l00087"></a><span class="lineno"> 87</span>  <span class="keyword">virtual</span> <a class="code" href="classgcu_1_1Document.html#a96abf511bb3308bdec563e2b0ba9e923">~Document</a> ();</div>
<div class="line"><a name="l00088"></a><span class="lineno"> 88</span> </div>
<div class="line"><a name="l00089"></a><span class="lineno"> 89</span> <span class="keyword">public</span>:</div>
<div class="line"><a name="l00090"></a><span class="lineno"> 90</span> </div>
<div class="line"><a name="l00098"></a><span class="lineno"> 98</span>  std::string& <a class="code" href="classgcu_1_1Document.html#a4651af70eb10676742e4f8e99949b7e9">GetTranslatedId</a> (<span class="keyword">const</span> <span class="keywordtype">char</span>* <span class="keywordtype">id</span>);</div>
<div class="line"><a name="l00099"></a><span class="lineno"> 99</span> </div>
<div class="line"><a name="l00106"></a><span class="lineno"><a class="code" href="classgcu_1_1Document.html#afc228f3c3c02dc3ef808a020d82a2390"> 106</a></span>  <span class="keywordtype">void</span> <a class="code" href="classgcu_1_1Document.html#afc228f3c3c02dc3ef808a020d82a2390">EraseTranslationId</a> (<span class="keyword">const</span> <span class="keywordtype">char</span>* Id) {m_TranslationTable.erase (Id);}</div>
<div class="line"><a name="l00107"></a><span class="lineno"> 107</span> </div>
<div class="line"><a name="l00113"></a><span class="lineno"><a class="code" href="classgcu_1_1Document.html#a92cd7036ddcacbb982742661356a2670"> 113</a></span>  <span class="keywordtype">void</span> <a class="code" href="classgcu_1_1Document.html#a92cd7036ddcacbb982742661356a2670">EmptyTranslationTable</a>() {m_TranslationTable.clear();}</div>
<div class="line"><a name="l00114"></a><span class="lineno"> 114</span> </div>
<div class="line"><a name="l00118"></a><span class="lineno"><a class="code" href="classgcu_1_1Document.html#a6fe4740eedb74c6e79852dce905491f9"> 118</a></span>  <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classgcu_1_1Document.html#a6fe4740eedb74c6e79852dce905491f9">SetTitle</a> (std::string& title) {<a class="code" href="classgcu_1_1Document.html#a77a71f5eb248150ff4e05fd072cc958a">m_Title</a> = title;}</div>
<div class="line"><a name="l00122"></a><span class="lineno"><a class="code" href="classgcu_1_1Document.html#ab3146322dd031644a66bc712670da459"> 122</a></span>  <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classgcu_1_1Document.html#ab3146322dd031644a66bc712670da459">SetTitle</a> (<span class="keywordtype">char</span> <span class="keyword">const</span> *title) {<a class="code" href="classgcu_1_1Document.html#a77a71f5eb248150ff4e05fd072cc958a">m_Title</a> = title;}</div>
<div class="line"><a name="l00126"></a><span class="lineno"><a class="code" href="classgcu_1_1Document.html#ae5df8a6d33cb17e0d61274a561fb8f18"> 126</a></span>  std::string &<a class="code" href="classgcu_1_1Document.html#ae5df8a6d33cb17e0d61274a561fb8f18">GetTitle</a> () {<span class="keywordflow">return</span> <a class="code" href="classgcu_1_1Document.html#a77a71f5eb248150ff4e05fd072cc958a">m_Title</a>;}</div>
<div class="line"><a name="l00127"></a><span class="lineno"> 127</span> </div>
<div class="line"><a name="l00134"></a><span class="lineno"><a class="code" href="classgcu_1_1Document.html#ae20296701818c3e30b19e587a0e983a4"> 134</a></span>  <span class="keywordtype">void</span> <a class="code" href="classgcu_1_1Document.html#ae20296701818c3e30b19e587a0e983a4">NotifyDirty</a> (<a class="code" href="classgcu_1_1Object.html">Object</a>* pObject) {<a class="code" href="classgcu_1_1Document.html#af7c681aecc3ac0895cb47037a861588f">m_DirtyObjects</a>.insert (pObject);}</div>
<div class="line"><a name="l00139"></a><span class="lineno"><a class="code" href="classgcu_1_1Document.html#a0872d3f786884f4cec6a5da1278cdef2"> 139</a></span>  <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classgcu_1_1Document.html#a0872d3f786884f4cec6a5da1278cdef2">Save</a> ()<span class="keyword"> const </span>{;}</div>
<div class="line"><a name="l00150"></a><span class="lineno"> 150</span>  <span class="keyword">virtual</span> <a class="code" href="classgcu_1_1Residue.html">Residue</a> *<a class="code" href="classgcu_1_1Document.html#a7d35b39361f00e971e5a9219e4969ba9">CreateResidue</a> (<span class="keywordtype">char</span> <span class="keyword">const</span> *name, <span class="keywordtype">char</span> <span class="keyword">const</span> *symbol, <a class="code" href="classgcu_1_1Molecule.html">Molecule</a> *molecule);</div>
<div class="line"><a name="l00160"></a><span class="lineno"> 160</span>  <span class="keyword">virtual</span> <a class="code" href="classgcu_1_1Residue.html">Residue</a> <span class="keyword">const</span> *<a class="code" href="classgcu_1_1Document.html#a797cb76f131732a96057587f028ac6bf">GetResidue</a> (<span class="keywordtype">char</span> <span class="keyword">const</span> *symbol, <span class="keywordtype">bool</span> *ambiguous = NULL);</div>
<div class="line"><a name="l00166"></a><span class="lineno"><a class="code" href="classgcu_1_1Document.html#a9ac91fe27bff56913afe4d703208d479"> 166</a></span>  <span class="keyword">virtual</span> GtkWindow *<a class="code" href="classgcu_1_1Document.html#a9ac91fe27bff56913afe4d703208d479">GetGtkWindow</a> () {<span class="keywordflow">return</span> NULL;}</div>
<div class="line"><a name="l00167"></a><span class="lineno"> 167</span> </div>
<div class="line"><a name="l00181"></a><span class="lineno"> 181</span>  <span class="keywordtype">bool</span> <a class="code" href="classgcu_1_1Document.html#a34f36698f8a1f1c5b14786672428f1ea">SetTarget</a> (<span class="keywordtype">char</span> <span class="keyword">const</span> *<span class="keywordtype">id</span>, <a class="code" href="classgcu_1_1Object.html">Object</a> **target, <a class="code" href="classgcu_1_1Object.html">Object</a> *parent, <a class="code" href="classgcu_1_1Object.html">Object</a> *owner = NULL, <a class="code" href="namespacegcu.html#a8b2b5ab4008c10355f1ca636bb1a3efa">Action</a> action = <a class="code" href="namespacegcu.html#a8b2b5ab4008c10355f1ca636bb1a3efaabe52c733de0a7f087f84a8aa1894cfcb">ActionException</a>) throw (std::runtime_error);</div>
<div class="line"><a name="l00182"></a><span class="lineno"> 182</span> </div>
<div class="line"><a name="l00187"></a><span class="lineno"> 187</span>  virtual <span class="keywordtype">bool</span> <a class="code" href="classgcu_1_1Document.html#a50e39fc3174a3fde4793cc7e98b1bc9e">Loaded</a> () throw (LoaderError);</div>
<div class="line"><a name="l00191"></a><span class="lineno"> 191</span>  std::<span class="keywordtype">string</span> <a class="code" href="classgcu_1_1Document.html#a3363de5bb02aec1fda5f4ccee4961c62">Name</a> ();</div>
<div class="line"><a name="l00192"></a><span class="lineno"> 192</span> </div>
<div class="line"><a name="l00199"></a><span class="lineno"> 199</span>  <span class="keywordtype">void</span> <a class="code" href="classgcu_1_1Document.html#ae111ae2b218f014c29f09be398936993">ObjectLoaded</a> (<a class="code" href="classgcu_1_1Object.html">Object</a> *obj);</div>
<div class="line"><a name="l00200"></a><span class="lineno"> 200</span> </div>
<div class="line"><a name="l00204"></a><span class="lineno"><a class="code" href="classgcu_1_1Document.html#a5da143c424a5131b85b0e074235b8e1c"> 204</a></span>  std::set < <a class="code" href="classgcu_1_1Object.html">Object</a> * > <a class="code" href="classgcu_1_1Document.html#a5da143c424a5131b85b0e074235b8e1c">GetNewObjects</a> () {<span class="keywordflow">return</span> m_NewObjects;}</div>
<div class="line"><a name="l00205"></a><span class="lineno"> 205</span> </div>
<div class="line"><a name="l00210"></a><span class="lineno"><a class="code" href="classgcu_1_1Document.html#a62f9ed7e64a3f6806add3de37fb18023"> 210</a></span>  <span class="keyword">virtual</span> <a class="code" href="classgcu_1_1Window.html">Window</a> *<a class="code" href="classgcu_1_1Document.html#a62f9ed7e64a3f6806add3de37fb18023">GetWindow</a> () {<span class="keywordflow">return</span> NULL;}</div>
<div class="line"><a name="l00211"></a><span class="lineno"> 211</span> </div>
<div class="line"><a name="l00212"></a><span class="lineno"> 212</span> <span class="keyword">private</span>:</div>
<div class="line"><a name="l00213"></a><span class="lineno"> 213</span> </div>
<div class="line"><a name="l00223"></a><span class="lineno"> 223</span>  <span class="keywordtype">char</span>* GetNewId (<span class="keywordtype">char</span> <span class="keyword">const</span> *<span class="keywordtype">id</span>, <span class="keywordtype">bool</span> Cache = <span class="keyword">true</span>);</div>
<div class="line"><a name="l00224"></a><span class="lineno"> 224</span> </div>
<div class="line"><a name="l00225"></a><span class="lineno"> 225</span> <span class="keyword">private</span>:</div>
<div class="line"><a name="l00226"></a><span class="lineno"> 226</span>  std::map <std::string, std::string> m_TranslationTable;<span class="comment">//used when Ids translations are necessary (on pasting...)</span></div>
<div class="line"><a name="l00227"></a><span class="lineno"> 227</span>  std::map <std::string, std::list <PendingTarget> > m_PendingTable;<span class="comment">//used to set pointers to objects when loading does not occur in the ideal order</span></div>
<div class="line"><a name="l00228"></a><span class="lineno"> 228</span>  std::set<Object*> m_NewObjects;</div>
<div class="line"><a name="l00229"></a><span class="lineno"> 229</span> </div>
<div class="line"><a name="l00230"></a><span class="lineno"> 230</span> <span class="keyword">protected</span>:</div>
<div class="line"><a name="l00234"></a><span class="lineno"><a class="code" href="classgcu_1_1Document.html#a77a71f5eb248150ff4e05fd072cc958a"> 234</a></span>  std::string <a class="code" href="classgcu_1_1Document.html#a77a71f5eb248150ff4e05fd072cc958a">m_Title</a>;</div>
<div class="line"><a name="l00235"></a><span class="lineno"> 235</span> </div>
<div class="line"><a name="l00239"></a><span class="lineno"><a class="code" href="classgcu_1_1Document.html#af7c681aecc3ac0895cb47037a861588f"> 239</a></span>  std::set<Object*> <a class="code" href="classgcu_1_1Document.html#af7c681aecc3ac0895cb47037a861588f">m_DirtyObjects</a>;</div>
<div class="line"><a name="l00240"></a><span class="lineno"> 240</span> </div>
<div class="line"><a name="l00248"></a><span class="lineno"><a class="code" href="classgcu_1_1Document.html#ae5256e7df2e6e648985256b51c9bf4f2"> 248</a></span> <a class="code" href="macros_8h.html#ad52419f8ee19ed3a6e49ca7db37e6a47">GCU_PROT_POINTER_PROP</a> (<a class="code" href="classgcu_1_1Application.html">Application</a>, App)</div>
<div class="line"><a name="l00255"></a><span class="lineno"><a class="code" href="classgcu_1_1Document.html#a65098e800c1ab322d43e4060aa7d9481"> 255</a></span> <a class="code" href="macros_8h.html#ac63298328b07e40af4fe4a5e8d1b8b7c">GCU_PROT_PROP</a> (<span class="keywordtype">bool</span>, Empty);</div>
<div class="line"><a name="l00267"></a><span class="lineno"><a class="code" href="classgcu_1_1Document.html#a74db801e21095d3efd130d1aca80fba4"> 267</a></span> <a class="code" href="macros_8h.html#a2e6e8322502a538f4583d41206cea297">GCU_PROP</a> (<span class="keywordtype">double</span>, Scale);</div>
<div class="line"><a name="l00268"></a><span class="lineno"> 268</span> };</div>
<div class="line"><a name="l00269"></a><span class="lineno"> 269</span> </div>
<div class="line"><a name="l00270"></a><span class="lineno"> 270</span> </div>
<div class="line"><a name="l00271"></a><span class="lineno"> 271</span> }</div>
<div class="line"><a name="l00272"></a><span class="lineno"> 272</span> <span class="preprocessor">#endif //GCU_DOCUMENT_H</span></div>
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