<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd"> <html xmlns="http://www.w3.org/1999/xhtml"> <head> <meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/> <meta http-equiv="X-UA-Compatible" content="IE=9"/> <meta name="generator" content="Doxygen 1.8.5"/> <title>cloudy: mole_reaction Class Reference</title> <link href="tabs.css" rel="stylesheet" type="text/css"/> <script type="text/javascript" src="jquery.js"></script> <script type="text/javascript" src="dynsections.js"></script> <link href="search/search.css" rel="stylesheet" type="text/css"/> <script type="text/javascript" src="search/search.js"></script> <script type="text/javascript"> $(document).ready(function() { searchBox.OnSelectItem(0); }); </script> <link href="doxygen.css" rel="stylesheet" type="text/css" /> </head> <body> <div id="top"><!-- do not remove this div, it is closed by doxygen! --> <div id="titlearea"> <table cellspacing="0" 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class="title">mole_reaction Class Reference<span class="mlabels"><span class="mlabel">abstract</span></span></div> </div> </div><!--header--> <div class="contents"> <p><code>#include <<a class="el" href="mole__priv_8h_source.html">mole_priv.h</a>></code></p> <div class="dynheader"> Collaboration diagram for mole_reaction:</div> <div class="dyncontent"> <div class="center"><img src="classmole__reaction__coll__graph.png" border="0" usemap="#mole__reaction_coll__map" alt="Collaboration graph"/></div> <map name="mole__reaction_coll__map" id="mole__reaction_coll__map"> <area shape="rect" id="node2" href="classmolecule.html" title="molecule" alt="" coords="333,205,408,232"/></map> <center><span class="legend">[<a href="graph_legend.html">legend</a>]</span></center></div> <table class="memberdecls"> <tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-methods"></a> Public Member Functions</h2></td></tr> <tr class="memitem:a0320cf4d72dd77999d2f6fcb1906abea"><td class="memItemLeft" align="right" valign="top">virtual double </td><td class="memItemRight" valign="bottom"><a class="el" href="classmole__reaction.html#a0320cf4d72dd77999d2f6fcb1906abea">rk</a> () const =0</td></tr> <tr class="separator:a0320cf4d72dd77999d2f6fcb1906abea"><td class="memSeparator" colspan="2"> </td></tr> <tr class="memitem:a317050de9927e5859c4f338dec092e88"><td class="memItemLeft" align="right" valign="top">virtual <a class="el" href="classmole__reaction.html">mole_reaction</a> * </td><td class="memItemRight" valign="bottom"><a class="el" href="classmole__reaction.html#a317050de9927e5859c4f338dec092e88">Create</a> () const =0</td></tr> <tr class="separator:a317050de9927e5859c4f338dec092e88"><td class="memSeparator" colspan="2"> </td></tr> <tr class="memitem:ad46abd2780f7e95c0764f1b371c28eff"><td class="memItemLeft" align="right" valign="top">virtual const char * </td><td class="memItemRight" valign="bottom"><a class="el" href="classmole__reaction.html#ad46abd2780f7e95c0764f1b371c28eff">name</a> ()=0</td></tr> <tr class="separator:ad46abd2780f7e95c0764f1b371c28eff"><td class="memSeparator" colspan="2"> </td></tr> <tr class="memitem:a8a596ec7ddd9cc0327029806a2c5a9f8"><td class="memItemLeft" align="right" valign="top">virtual </td><td class="memItemRight" valign="bottom"><a class="el" href="classmole__reaction.html#a8a596ec7ddd9cc0327029806a2c5a9f8">~mole_reaction</a> ()</td></tr> <tr class="separator:a8a596ec7ddd9cc0327029806a2c5a9f8"><td class="memSeparator" colspan="2"> </td></tr> </table><table class="memberdecls"> <tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-attribs"></a> Data Fields</h2></td></tr> <tr class="memitem:aa369a7c28b4be65d81bbbb783487eb6b"><td class="memItemLeft" align="right" valign="top">string </td><td class="memItemRight" valign="bottom"><a class="el" href="classmole__reaction.html#aa369a7c28b4be65d81bbbb783487eb6b">label</a></td></tr> <tr class="separator:aa369a7c28b4be65d81bbbb783487eb6b"><td class="memSeparator" colspan="2"> </td></tr> <tr class="memitem:adf3b090301f43615a4f6b888da45b22e"><td class="memItemLeft" align="right" valign="top">int </td><td class="memItemRight" valign="bottom"><a class="el" href="classmole__reaction.html#adf3b090301f43615a4f6b888da45b22e">nreactants</a></td></tr> <tr class="separator:adf3b090301f43615a4f6b888da45b22e"><td class="memSeparator" colspan="2"> </td></tr> <tr class="memitem:a9db1f9d08db37e56ca939b07455268bc"><td class="memItemLeft" align="right" valign="top">int </td><td class="memItemRight" valign="bottom"><a class="el" href="classmole__reaction.html#a9db1f9d08db37e56ca939b07455268bc">nproducts</a></td></tr> <tr class="separator:a9db1f9d08db37e56ca939b07455268bc"><td class="memSeparator" colspan="2"> </td></tr> <tr class="memitem:a968da6e8d7a867e329dc364f06f5915a"><td class="memItemLeft" align="right" valign="top">int </td><td class="memItemRight" valign="bottom"><a class="el" href="classmole__reaction.html#a968da6e8d7a867e329dc364f06f5915a">photon</a></td></tr> <tr class="separator:a968da6e8d7a867e329dc364f06f5915a"><td class="memSeparator" colspan="2"> </td></tr> <tr class="memitem:a7a3166f7633f5ae0b0323d09c1d8441a"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classmolecule.html">molecule</a> * </td><td class="memItemRight" valign="bottom"><a class="el" href="classmole__reaction.html#a7a3166f7633f5ae0b0323d09c1d8441a">reactants</a> [<a class="el" href="mole__priv_8h.html#a1b7686e134e7847ac578b3928fd5b5a6">MAXREACTANTS</a>]</td></tr> <tr class="separator:a7a3166f7633f5ae0b0323d09c1d8441a"><td class="memSeparator" colspan="2"> </td></tr> <tr class="memitem:a9e8f4aba648f14510e08349bd1ed044f"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classmolecule.html">molecule</a> * </td><td class="memItemRight" valign="bottom"><a class="el" href="classmole__reaction.html#a9e8f4aba648f14510e08349bd1ed044f">rvector</a> [<a class="el" href="mole__priv_8h.html#a1b7686e134e7847ac578b3928fd5b5a6">MAXREACTANTS</a>]</td></tr> <tr class="separator:a9e8f4aba648f14510e08349bd1ed044f"><td class="memSeparator" colspan="2"> </td></tr> <tr class="memitem:a27a83b19f258cf7efd6cd72a4f654b64"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classmolecule.html">molecule</a> * </td><td class="memItemRight" valign="bottom"><a class="el" href="classmole__reaction.html#a27a83b19f258cf7efd6cd72a4f654b64">rvector_excit</a> [<a class="el" href="mole__priv_8h.html#a1b7686e134e7847ac578b3928fd5b5a6">MAXREACTANTS</a>]</td></tr> <tr class="separator:a27a83b19f258cf7efd6cd72a4f654b64"><td class="memSeparator" colspan="2"> </td></tr> <tr class="memitem:ab71cfbe073a638cbaedf2010fecafb93"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classmolecule.html">molecule</a> * </td><td class="memItemRight" valign="bottom"><a class="el" href="classmole__reaction.html#ab71cfbe073a638cbaedf2010fecafb93">products</a> [<a class="el" href="mole__priv_8h.html#a273bac6ec76342c000e58ab0d23179e2">MAXPRODUCTS</a>]</td></tr> <tr class="separator:ab71cfbe073a638cbaedf2010fecafb93"><td class="memSeparator" colspan="2"> </td></tr> <tr class="memitem:a092f34607701f01e248557093c6c7e07"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classmolecule.html">molecule</a> * </td><td class="memItemRight" valign="bottom"><a class="el" href="classmole__reaction.html#a092f34607701f01e248557093c6c7e07">pvector</a> [<a class="el" href="mole__priv_8h.html#a273bac6ec76342c000e58ab0d23179e2">MAXPRODUCTS</a>]</td></tr> <tr class="separator:a092f34607701f01e248557093c6c7e07"><td class="memSeparator" colspan="2"> </td></tr> <tr class="memitem:a0223efae50ccfdbeb307b878b0e49eb0"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classmolecule.html">molecule</a> * </td><td class="memItemRight" valign="bottom"><a class="el" href="classmole__reaction.html#a0223efae50ccfdbeb307b878b0e49eb0">pvector_excit</a> [<a class="el" href="mole__priv_8h.html#a273bac6ec76342c000e58ab0d23179e2">MAXPRODUCTS</a>]</td></tr> <tr class="separator:a0223efae50ccfdbeb307b878b0e49eb0"><td class="memSeparator" colspan="2"> </td></tr> <tr class="memitem:afdac77262777c5108b6705073a66500b"><td class="memItemLeft" align="right" valign="top">double </td><td class="memItemRight" valign="bottom"><a class="el" href="classmole__reaction.html#afdac77262777c5108b6705073a66500b">reduced_mass</a></td></tr> <tr class="separator:afdac77262777c5108b6705073a66500b"><td class="memSeparator" colspan="2"> </td></tr> <tr class="memitem:a86ac92af0346783740945782f51e4ba5"><td class="memItemLeft" align="right" valign="top">double </td><td class="memItemRight" valign="bottom"><a class="el" href="classmole__reaction.html#a86ac92af0346783740945782f51e4ba5">a</a></td></tr> <tr class="separator:a86ac92af0346783740945782f51e4ba5"><td class="memSeparator" colspan="2"> </td></tr> <tr class="memitem:a830b245924e885ac5701580cc18e6385"><td class="memItemLeft" align="right" valign="top">double </td><td class="memItemRight" valign="bottom"><a class="el" href="classmole__reaction.html#a830b245924e885ac5701580cc18e6385">b</a></td></tr> <tr class="separator:a830b245924e885ac5701580cc18e6385"><td class="memSeparator" colspan="2"> </td></tr> <tr class="memitem:a2eb7e2ee5d4dbdd2400f5ef56be2bbe6"><td class="memItemLeft" align="right" valign="top">double </td><td class="memItemRight" valign="bottom"><a class="el" href="classmole__reaction.html#a2eb7e2ee5d4dbdd2400f5ef56be2bbe6">c</a></td></tr> <tr class="separator:a2eb7e2ee5d4dbdd2400f5ef56be2bbe6"><td class="memSeparator" colspan="2"> </td></tr> <tr class="memitem:a06a06bb13631f50b43b2f7bceed3adfa"><td class="memItemLeft" align="right" valign="top">int </td><td class="memItemRight" valign="bottom"><a class="el" href="classmole__reaction.html#a06a06bb13631f50b43b2f7bceed3adfa">udfastate</a></td></tr> <tr class="separator:a06a06bb13631f50b43b2f7bceed3adfa"><td class="memSeparator" colspan="2"> </td></tr> <tr class="memitem:a44ae83c70b72e6c179def0651d8530b6"><td class="memItemLeft" align="right" valign="top">int </td><td class="memItemRight" valign="bottom"><a class="el" href="classmole__reaction.html#a44ae83c70b72e6c179def0651d8530b6">source</a></td></tr> <tr class="separator:a44ae83c70b72e6c179def0651d8530b6"><td class="memSeparator" colspan="2"> </td></tr> <tr class="memitem:a399e2114371c415769b134589aabf10f"><td class="memItemLeft" align="right" valign="top">long </td><td class="memItemRight" valign="bottom"><a class="el" href="classmole__reaction.html#a399e2114371c415769b134589aabf10f">index</a></td></tr> <tr class="separator:a399e2114371c415769b134589aabf10f"><td class="memSeparator" colspan="2"> </td></tr> </table> <a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2> <div class="textblock"> <p>Definition at line <a class="el" href="mole__priv_8h_source.html#l00049">49</a> of file <a class="el" href="mole__priv_8h_source.html">mole_priv.h</a>.</p> </div><h2 class="groupheader">Constructor & Destructor Documentation</h2> <a class="anchor" id="a8a596ec7ddd9cc0327029806a2c5a9f8"></a> <div class="memitem"> <div class="memproto"> <table class="mlabels"> <tr> <td class="mlabels-left"> <table class="memname"> <tr> <td class="memname">virtual mole_reaction::~mole_reaction </td> <td>(</td> <td class="paramname"></td><td>)</td> <td></td> </tr> </table> </td> <td class="mlabels-right"> <span class="mlabels"><span class="mlabel">inline</span><span class="mlabel">virtual</span></span> </td> </tr> </table> </div><div class="memdoc"> <p>Definition at line <a class="el" href="mole__priv_8h_source.html#l00066">66</a> of file <a class="el" href="mole__priv_8h_source.html">mole_priv.h</a>.</p> </div> </div> <h2 class="groupheader">Member Function Documentation</h2> <a class="anchor" id="a317050de9927e5859c4f338dec092e88"></a> <div class="memitem"> <div class="memproto"> <table class="mlabels"> <tr> <td class="mlabels-left"> <table class="memname"> <tr> <td class="memname">virtual <a class="el" href="classmole__reaction.html">mole_reaction</a>* mole_reaction::Create </td> <td>(</td> <td class="paramname"></td><td>)</td> <td> const</td> </tr> </table> </td> <td class="mlabels-right"> <span class="mlabels"><span class="mlabel">pure virtual</span></span> </td> </tr> </table> </div><div class="memdoc"> </div> </div> <a class="anchor" id="ad46abd2780f7e95c0764f1b371c28eff"></a> <div class="memitem"> <div class="memproto"> <table class="mlabels"> <tr> <td class="mlabels-left"> <table class="memname"> <tr> <td class="memname">virtual const char* mole_reaction::name </td> <td>(</td> <td class="paramname"></td><td>)</td> <td></td> </tr> </table> </td> <td class="mlabels-right"> <span class="mlabels"><span class="mlabel">pure virtual</span></span> </td> </tr> </table> </div><div class="memdoc"> </div> </div> <a class="anchor" id="a0320cf4d72dd77999d2f6fcb1906abea"></a> <div class="memitem"> <div class="memproto"> <table class="mlabels"> <tr> <td class="mlabels-left"> <table class="memname"> <tr> <td class="memname">virtual double mole_reaction::rk </td> <td>(</td> <td class="paramname"></td><td>)</td> <td> const</td> </tr> </table> </td> <td class="mlabels-right"> <span class="mlabels"><span class="mlabel">pure virtual</span></span> </td> </tr> </table> </div><div class="memdoc"> <p>Referenced by <a class="el" href="mole__reactions_8cpp_source.html#l02840">mole_update_rks()</a>, <a class="el" href="mole__reactions_8cpp_source.html#l03951">t_mole_local::sink_rate()</a>, and <a class="el" href="mole__reactions_8cpp_source.html#l04084">t_mole_local::source_rate_tot()</a>.</p> </div> </div> <h2 class="groupheader">Field Documentation</h2> <a class="anchor" id="a86ac92af0346783740945782f51e4ba5"></a> <div class="memitem"> <div class="memproto"> <table class="memname"> <tr> <td class="memname">double mole_reaction::a</td> </tr> </table> </div><div class="memdoc"> <p>Definition at line <a class="el" href="mole__priv_8h_source.html#l00059">59</a> of file <a class="el" href="mole__priv_8h_source.html">mole_priv.h</a>.</p> <p>Referenced by <a class="el" href="mole__reactions_8cpp_source.html#l02794">compare_udfa()</a>, <a class="el" href="mole__reactions_8cpp_source.html#l02840">mole_update_rks()</a>, <a class="el" href="mole__reactions_8cpp_source.html#l03951">t_mole_local::sink_rate()</a>, and <a class="el" href="mole__reactions_8cpp_source.html#l04084">t_mole_local::source_rate_tot()</a>.</p> </div> </div> <a class="anchor" id="a830b245924e885ac5701580cc18e6385"></a> <div class="memitem"> <div class="memproto"> <table class="memname"> <tr> <td class="memname">double mole_reaction::b</td> </tr> </table> </div><div class="memdoc"> <p>Definition at line <a class="el" href="mole__priv_8h_source.html#l00059">59</a> of file <a class="el" href="mole__priv_8h_source.html">mole_priv.h</a>.</p> <p>Referenced by <a class="el" href="mole__reactions_8cpp_source.html#l02794">compare_udfa()</a>.</p> </div> </div> <a class="anchor" id="a2eb7e2ee5d4dbdd2400f5ef56be2bbe6"></a> <div class="memitem"> <div class="memproto"> <table class="memname"> <tr> <td class="memname">double mole_reaction::c</td> </tr> </table> </div><div class="memdoc"> <p>Definition at line <a class="el" href="mole__priv_8h_source.html#l00059">59</a> of file <a class="el" href="mole__priv_8h_source.html">mole_priv.h</a>.</p> <p>Referenced by <a class="el" href="mole__reactions_8cpp_source.html#l02794">compare_udfa()</a>.</p> </div> </div> <a class="anchor" id="a399e2114371c415769b134589aabf10f"></a> <div class="memitem"> <div class="memproto"> <table class="memname"> <tr> <td class="memname">long mole_reaction::index</td> </tr> </table> </div><div class="memdoc"> <p>Definition at line <a class="el" href="mole__priv_8h_source.html#l00062">62</a> of file <a class="el" href="mole__priv_8h_source.html">mole_priv.h</a>.</p> <p>Referenced by <a class="el" href="mole__reactions_8cpp_source.html#l04114">t_mole_local::chem_heat()</a>, <a class="el" href="mole__reactions_8cpp_source.html#l03998">t_mole_local::dissoc_rate()</a>, <a class="el" href="mole__reactions_8cpp_source.html#l03899">t_mole_local::findrate()</a>, <a class="el" href="mole__reactions_8cpp_source.html#l03885">t_mole_local::findrk()</a>, <a class="el" href="mole__eval__balance_8cpp_source.html#l00308">mole_dominant_rates()</a>, <a class="el" href="mole__eval__balance_8cpp_source.html#l00036">mole_eval_balance()</a>, <a class="el" href="mole__eval__balance_8cpp_source.html#l00122">mole_eval_sources()</a>, <a class="el" href="newton__step_8cpp_source.html#l00316">mole_print_species_reactions()</a>, <a class="el" href="mole__reactions_8cpp_source.html#l04220">mole_punch()</a>, <a class="el" href="mole__reactions_8cpp_source.html#l02866">mole_rk_bigchange()</a>, and <a class="el" href="mole__reactions_8cpp_source.html#l02840">mole_update_rks()</a>.</p> </div> </div> <a class="anchor" id="aa369a7c28b4be65d81bbbb783487eb6b"></a> <div class="memitem"> <div class="memproto"> <table class="memname"> <tr> <td class="memname">string mole_reaction::label</td> </tr> </table> </div><div class="memdoc"> <p>Definition at line <a class="el" href="mole__priv_8h_source.html#l00051">51</a> of file <a class="el" href="mole__priv_8h_source.html">mole_priv.h</a>.</p> <p>Referenced by <a class="el" href="mole__reactions_8cpp_source.html#l02387">canonicalize_reaction()</a>, <a class="el" href="mole__reactions_8cpp_source.html#l04114">t_mole_local::chem_heat()</a>, <a class="el" href="mole__reactions_8cpp_source.html#l02574">lgReactBalance()</a>, <a class="el" href="mole__eval__balance_8cpp_source.html#l00308">mole_dominant_rates()</a>, <a class="el" href="newton__step_8cpp_source.html#l00316">mole_print_species_reactions()</a>, <a class="el" href="mole__reactions_8cpp_source.html#l04220">mole_punch()</a>, <a class="el" href="mole__reactions_8cpp_source.html#l02866">mole_rk_bigchange()</a>, and <a class="el" href="mole__reactions_8cpp_source.html#l02840">mole_update_rks()</a>.</p> </div> </div> <a class="anchor" id="a9db1f9d08db37e56ca939b07455268bc"></a> <div class="memitem"> <div class="memproto"> <table class="memname"> <tr> <td class="memname">int mole_reaction::nproducts</td> </tr> </table> </div><div class="memdoc"> <p>Definition at line <a class="el" href="mole__priv_8h_source.html#l00052">52</a> of file <a class="el" href="mole__priv_8h_source.html">mole_priv.h</a>.</p> <p>Referenced by <a class="el" href="mole__reactions_8cpp_source.html#l02387">canonicalize_reaction()</a>, <a class="el" href="mole__reactions_8cpp_source.html#l04114">t_mole_local::chem_heat()</a>, <a class="el" href="mole__reactions_8cpp_source.html#l03998">t_mole_local::dissoc_rate()</a>, <a class="el" href="mole__reactions_8cpp_source.html#l02574">lgReactBalance()</a>, <a class="el" href="mole__reactions_8cpp_source.html#l02183">mole_cmp_num_in_out_reactions()</a>, <a class="el" href="mole__eval__balance_8cpp_source.html#l00308">mole_dominant_rates()</a>, <a class="el" href="mole__eval__balance_8cpp_source.html#l00036">mole_eval_balance()</a>, <a class="el" href="mole__eval__balance_8cpp_source.html#l00122">mole_eval_sources()</a>, <a class="el" href="mole__reactions_8cpp_source.html#l02127">mole_get_equilibrium_constant()</a>, <a class="el" href="newton__step_8cpp_source.html#l00316">mole_print_species_reactions()</a>, <a class="el" href="mole__reactions_8cpp_source.html#l04220">mole_punch()</a>, <a class="el" href="mole__reactions_8cpp_source.html#l02298">parse_reaction()</a>, <a class="el" href="mole__reactions_8cpp_source.html#l02501">plot_sparsity()</a>, <a class="el" href="mole__reactions_8cpp_source.html#l02419">register_reaction_vectors()</a>, and <a class="el" href="mole__reactions_8cpp_source.html#l04084">t_mole_local::source_rate_tot()</a>.</p> </div> </div> <a class="anchor" id="adf3b090301f43615a4f6b888da45b22e"></a> <div class="memitem"> <div class="memproto"> <table class="memname"> <tr> <td class="memname">int mole_reaction::nreactants</td> </tr> </table> </div><div class="memdoc"> <p>Definition at line <a class="el" href="mole__priv_8h_source.html#l00052">52</a> of file <a class="el" href="mole__priv_8h_source.html">mole_priv.h</a>.</p> <p>Referenced by <a class="el" href="mole__reactions_8cpp_source.html#l02387">canonicalize_reaction()</a>, <a class="el" href="mole__reactions_8cpp_source.html#l04114">t_mole_local::chem_heat()</a>, <a class="el" href="mole__reactions_8cpp_source.html#l03998">t_mole_local::dissoc_rate()</a>, <a class="el" href="mole__reactions_8cpp_source.html#l03899">t_mole_local::findrate()</a>, <a class="el" href="mole__reactions_8cpp_source.html#l02574">lgReactBalance()</a>, <a class="el" href="mole__reactions_8cpp_source.html#l02183">mole_cmp_num_in_out_reactions()</a>, <a class="el" href="mole__eval__balance_8cpp_source.html#l00308">mole_dominant_rates()</a>, <a class="el" href="mole__eval__balance_8cpp_source.html#l00036">mole_eval_balance()</a>, <a class="el" href="mole__eval__balance_8cpp_source.html#l00122">mole_eval_sources()</a>, <a class="el" href="mole__reactions_8cpp_source.html#l02127">mole_get_equilibrium_constant()</a>, <a class="el" href="newton__step_8cpp_source.html#l00316">mole_print_species_reactions()</a>, <a class="el" href="mole__reactions_8cpp_source.html#l04220">mole_punch()</a>, <a class="el" href="mole__reactions_8cpp_source.html#l02298">parse_reaction()</a>, <a class="el" href="mole__reactions_8cpp_source.html#l02501">plot_sparsity()</a>, <a class="el" href="mole__reactions_8cpp_source.html#l02419">register_reaction_vectors()</a>, <a class="el" href="mole__reactions_8cpp_source.html#l03951">t_mole_local::sink_rate()</a>, and <a class="el" href="mole__reactions_8cpp_source.html#l04084">t_mole_local::source_rate_tot()</a>.</p> </div> </div> <a class="anchor" id="a968da6e8d7a867e329dc364f06f5915a"></a> <div class="memitem"> <div class="memproto"> <table class="memname"> <tr> <td class="memname">int mole_reaction::photon</td> </tr> </table> </div><div class="memdoc"> <p>Definition at line <a class="el" href="mole__priv_8h_source.html#l00052">52</a> of file <a class="el" href="mole__priv_8h_source.html">mole_priv.h</a>.</p> </div> </div> <a class="anchor" id="ab71cfbe073a638cbaedf2010fecafb93"></a> <div class="memitem"> <div class="memproto"> <table class="memname"> <tr> <td class="memname"><a class="el" href="classmolecule.html">molecule</a>* mole_reaction::products[<a class="el" href="mole__priv_8h.html#a273bac6ec76342c000e58ab0d23179e2">MAXPRODUCTS</a>]</td> </tr> </table> </div><div class="memdoc"> <p>Definition at line <a class="el" href="mole__priv_8h_source.html#l00056">56</a> of file <a class="el" href="mole__priv_8h_source.html">mole_priv.h</a>.</p> <p>Referenced by <a class="el" href="mole__reactions_8cpp_source.html#l02387">canonicalize_reaction()</a>, <a class="el" href="mole__reactions_8cpp_source.html#l04114">t_mole_local::chem_heat()</a>, <a class="el" href="mole__reactions_8cpp_source.html#l02794">compare_udfa()</a>, <a class="el" href="mole__reactions_8cpp_source.html#l03998">t_mole_local::dissoc_rate()</a>, <a class="el" href="mole__reactions_8cpp_source.html#l02574">lgReactBalance()</a>, <a class="el" href="mole__reactions_8cpp_source.html#l02183">mole_cmp_num_in_out_reactions()</a>, <a class="el" href="mole__eval__balance_8cpp_source.html#l00308">mole_dominant_rates()</a>, <a class="el" href="mole__eval__balance_8cpp_source.html#l00036">mole_eval_balance()</a>, <a class="el" href="mole__eval__balance_8cpp_source.html#l00122">mole_eval_sources()</a>, <a class="el" href="mole__reactions_8cpp_source.html#l02127">mole_get_equilibrium_constant()</a>, <a class="el" href="newton__step_8cpp_source.html#l00316">mole_print_species_reactions()</a>, <a class="el" href="mole__reactions_8cpp_source.html#l04220">mole_punch()</a>, <a class="el" href="mole__reactions_8cpp_source.html#l02298">parse_reaction()</a>, <a class="el" href="mole__reactions_8cpp_source.html#l02501">plot_sparsity()</a>, <a class="el" href="mole__reactions_8cpp_source.html#l02419">register_reaction_vectors()</a>, and <a class="el" href="mole__reactions_8cpp_source.html#l04084">t_mole_local::source_rate_tot()</a>.</p> </div> </div> <a class="anchor" id="a092f34607701f01e248557093c6c7e07"></a> <div class="memitem"> <div class="memproto"> <table class="memname"> <tr> <td class="memname"><a class="el" href="classmolecule.html">molecule</a>* mole_reaction::pvector[<a class="el" href="mole__priv_8h.html#a273bac6ec76342c000e58ab0d23179e2">MAXPRODUCTS</a>]</td> </tr> </table> </div><div class="memdoc"> <p>Definition at line <a class="el" href="mole__priv_8h_source.html#l00057">57</a> of file <a class="el" href="mole__priv_8h_source.html">mole_priv.h</a>.</p> <p>Referenced by <a class="el" href="mole__eval__balance_8cpp_source.html#l00308">mole_dominant_rates()</a>, <a class="el" href="mole__eval__balance_8cpp_source.html#l00036">mole_eval_balance()</a>, <a class="el" href="mole__eval__balance_8cpp_source.html#l00122">mole_eval_sources()</a>, <a class="el" href="newton__step_8cpp_source.html#l00316">mole_print_species_reactions()</a>, <a class="el" href="mole__reactions_8cpp_source.html#l04220">mole_punch()</a>, <a class="el" href="mole__reactions_8cpp_source.html#l02501">plot_sparsity()</a>, <a class="el" href="mole__reactions_8cpp_source.html#l02419">register_reaction_vectors()</a>, and <a class="el" href="mole__reactions_8cpp_source.html#l04084">t_mole_local::source_rate_tot()</a>.</p> </div> </div> <a class="anchor" id="a0223efae50ccfdbeb307b878b0e49eb0"></a> <div class="memitem"> <div class="memproto"> <table class="memname"> <tr> <td class="memname"><a class="el" href="classmolecule.html">molecule</a>* mole_reaction::pvector_excit[<a class="el" href="mole__priv_8h.html#a273bac6ec76342c000e58ab0d23179e2">MAXPRODUCTS</a>]</td> </tr> </table> </div><div class="memdoc"> <p>Definition at line <a class="el" href="mole__priv_8h_source.html#l00058">58</a> of file <a class="el" href="mole__priv_8h_source.html">mole_priv.h</a>.</p> <p>Referenced by <a class="el" href="mole__reactions_8cpp_source.html#l04220">mole_punch()</a>, <a class="el" href="mole__reactions_8cpp_source.html#l02419">register_reaction_vectors()</a>, and <a class="el" href="mole__reactions_8cpp_source.html#l04084">t_mole_local::source_rate_tot()</a>.</p> </div> </div> <a class="anchor" id="a7a3166f7633f5ae0b0323d09c1d8441a"></a> <div class="memitem"> <div class="memproto"> <table class="memname"> <tr> <td class="memname"><a class="el" href="classmolecule.html">molecule</a>* mole_reaction::reactants[<a class="el" href="mole__priv_8h.html#a1b7686e134e7847ac578b3928fd5b5a6">MAXREACTANTS</a>]</td> </tr> </table> </div><div class="memdoc"> <p>Definition at line <a class="el" href="mole__priv_8h_source.html#l00053">53</a> of file <a class="el" href="mole__priv_8h_source.html">mole_priv.h</a>.</p> <p>Referenced by <a class="el" href="mole__reactions_8cpp_source.html#l02387">canonicalize_reaction()</a>, <a class="el" href="mole__reactions_8cpp_source.html#l04114">t_mole_local::chem_heat()</a>, <a class="el" href="mole__reactions_8cpp_source.html#l02794">compare_udfa()</a>, <a class="el" href="mole__reactions_8cpp_source.html#l03998">t_mole_local::dissoc_rate()</a>, <a class="el" href="mole__reactions_8cpp_source.html#l03899">t_mole_local::findrate()</a>, <a class="el" href="mole__reactions_8cpp_source.html#l02574">lgReactBalance()</a>, <a class="el" href="mole__reactions_8cpp_source.html#l02183">mole_cmp_num_in_out_reactions()</a>, <a class="el" href="mole__eval__balance_8cpp_source.html#l00308">mole_dominant_rates()</a>, <a class="el" href="mole__eval__balance_8cpp_source.html#l00036">mole_eval_balance()</a>, <a class="el" href="mole__eval__balance_8cpp_source.html#l00122">mole_eval_sources()</a>, <a class="el" href="mole__reactions_8cpp_source.html#l02127">mole_get_equilibrium_constant()</a>, <a class="el" href="newton__step_8cpp_source.html#l00316">mole_print_species_reactions()</a>, <a class="el" href="mole__reactions_8cpp_source.html#l04220">mole_punch()</a>, <a class="el" href="mole__reactions_8cpp_source.html#l02298">parse_reaction()</a>, <a class="el" href="mole__reactions_8cpp_source.html#l02501">plot_sparsity()</a>, <a class="el" href="mole__reactions_8cpp_source.html#l02419">register_reaction_vectors()</a>, <a class="el" href="mole__reactions_8cpp_source.html#l03951">t_mole_local::sink_rate()</a>, and <a class="el" href="mole__reactions_8cpp_source.html#l04084">t_mole_local::source_rate_tot()</a>.</p> </div> </div> <a class="anchor" id="afdac77262777c5108b6705073a66500b"></a> <div class="memitem"> <div class="memproto"> <table class="memname"> <tr> <td class="memname">double mole_reaction::reduced_mass</td> </tr> </table> </div><div class="memdoc"> <p>Definition at line <a class="el" href="mole__priv_8h_source.html#l00059">59</a> of file <a class="el" href="mole__priv_8h_source.html">mole_priv.h</a>.</p> </div> </div> <a class="anchor" id="a9e8f4aba648f14510e08349bd1ed044f"></a> <div class="memitem"> <div class="memproto"> <table class="memname"> <tr> <td class="memname"><a class="el" href="classmolecule.html">molecule</a>* mole_reaction::rvector[<a class="el" href="mole__priv_8h.html#a1b7686e134e7847ac578b3928fd5b5a6">MAXREACTANTS</a>]</td> </tr> </table> </div><div class="memdoc"> <p>Definition at line <a class="el" href="mole__priv_8h_source.html#l00054">54</a> of file <a class="el" href="mole__priv_8h_source.html">mole_priv.h</a>.</p> <p>Referenced by <a class="el" href="mole__reactions_8cpp_source.html#l04114">t_mole_local::chem_heat()</a>, <a class="el" href="mole__eval__balance_8cpp_source.html#l00308">mole_dominant_rates()</a>, <a class="el" href="mole__eval__balance_8cpp_source.html#l00036">mole_eval_balance()</a>, <a class="el" href="mole__eval__balance_8cpp_source.html#l00122">mole_eval_sources()</a>, <a class="el" href="newton__step_8cpp_source.html#l00316">mole_print_species_reactions()</a>, <a class="el" href="mole__reactions_8cpp_source.html#l04220">mole_punch()</a>, <a class="el" href="mole__reactions_8cpp_source.html#l02501">plot_sparsity()</a>, <a class="el" href="mole__reactions_8cpp_source.html#l02419">register_reaction_vectors()</a>, and <a class="el" href="mole__reactions_8cpp_source.html#l03951">t_mole_local::sink_rate()</a>.</p> </div> </div> <a class="anchor" id="a27a83b19f258cf7efd6cd72a4f654b64"></a> <div class="memitem"> <div class="memproto"> <table class="memname"> <tr> <td class="memname"><a class="el" href="classmolecule.html">molecule</a>* mole_reaction::rvector_excit[<a class="el" href="mole__priv_8h.html#a1b7686e134e7847ac578b3928fd5b5a6">MAXREACTANTS</a>]</td> </tr> </table> </div><div class="memdoc"> <p>Definition at line <a class="el" href="mole__priv_8h_source.html#l00055">55</a> of file <a class="el" href="mole__priv_8h_source.html">mole_priv.h</a>.</p> <p>Referenced by <a class="el" href="mole__reactions_8cpp_source.html#l04220">mole_punch()</a>, <a class="el" href="mole__reactions_8cpp_source.html#l02419">register_reaction_vectors()</a>, and <a class="el" href="mole__reactions_8cpp_source.html#l03951">t_mole_local::sink_rate()</a>.</p> </div> </div> <a class="anchor" id="a44ae83c70b72e6c179def0651d8530b6"></a> <div class="memitem"> <div class="memproto"> <table class="memname"> <tr> <td class="memname">int mole_reaction::source</td> </tr> </table> </div><div class="memdoc"> <p>Definition at line <a class="el" href="mole__priv_8h_source.html#l00061">61</a> of file <a class="el" href="mole__priv_8h_source.html">mole_priv.h</a>.</p> </div> </div> <a class="anchor" id="a06a06bb13631f50b43b2f7bceed3adfa"></a> <div class="memitem"> <div class="memproto"> <table class="memname"> <tr> <td class="memname">int mole_reaction::udfastate</td> </tr> </table> </div><div class="memdoc"> <p>Definition at line <a class="el" href="mole__priv_8h_source.html#l00060">60</a> of file <a class="el" href="mole__priv_8h_source.html">mole_priv.h</a>.</p> <p>Referenced by <a class="el" href="mole__reactions_8cpp_source.html#l02794">compare_udfa()</a>.</p> </div> </div> <hr/>The documentation for this class was generated from the following file:<ul> <li>/home/iurt/rpmbuild/BUILD/c13.01/source/<a class="el" href="mole__priv_8h_source.html">mole_priv.h</a></li> </ul> </div><!-- contents --> <!-- start footer part --> <hr class="footer"/><address class="footer"><small> Generated on Sat Oct 19 2013 10:43:57 for cloudy by  <a href="http://www.doxygen.org/index.html"> <img class="footer" src="doxygen.png" alt="doxygen"/> </a> 1.8.5 </small></address> </body> </html>