<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd"> <html xmlns="http://www.w3.org/1999/xhtml"> <head> <meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/> <meta http-equiv="X-UA-Compatible" content="IE=9"/> <meta name="generator" content="Doxygen 1.8.5"/> <title>cloudy: /home/iurt/rpmbuild/BUILD/c13.01/source/deuterium.cpp File Reference</title> <link href="tabs.css" rel="stylesheet" type="text/css"/> <script type="text/javascript" src="jquery.js"></script> <script type="text/javascript" src="dynsections.js"></script> <link href="search/search.css" rel="stylesheet" type="text/css"/> <script type="text/javascript" src="search/search.js"></script> <script type="text/javascript"> $(document).ready(function() { searchBox.OnSelectItem(0); }); </script> <link href="doxygen.css" rel="stylesheet" type="text/css" /> </head> <body> <div id="top"><!-- do not remove this div, it is closed by doxygen! --> <div id="titlearea"> <table cellspacing="0" cellpadding="0"> <tbody> <tr style="height: 56px;"> <td style="padding-left: 0.5em;"> <div id="projectname">cloudy  <span id="projectnumber">trunk</span> </div> </td> </tr> </tbody> </table> </div> <!-- end header part --> <!-- Generated by Doxygen 1.8.5 --> <script type="text/javascript"> var searchBox = new SearchBox("searchBox", "search",false,'Search'); </script> <div id="navrow1" class="tabs"> <ul class="tablist"> <li><a href="index.html"><span>Main Page</span></a></li> <li><a href="pages.html"><span>Related Pages</span></a></li> <li><a href="namespaces.html"><span>Namespaces</span></a></li> <li><a href="annotated.html"><span>Data Structures</span></a></li> <li class="current"><a href="files.html"><span>Files</span></a></li> <li> <div id="MSearchBox" class="MSearchBoxInactive"> <span class="left"> <img id="MSearchSelect" src="search/mag_sel.png" onmouseover="return searchBox.OnSearchSelectShow()" onmouseout="return searchBox.OnSearchSelectHide()" alt=""/> <input type="text" id="MSearchField" value="Search" accesskey="S" onfocus="searchBox.OnSearchFieldFocus(true)" onblur="searchBox.OnSearchFieldFocus(false)" onkeyup="searchBox.OnSearchFieldChange(event)"/> </span><span class="right"> <a id="MSearchClose" href="javascript:searchBox.CloseResultsWindow()"><img id="MSearchCloseImg" border="0" src="search/close.png" alt=""/></a> </span> </div> </li> </ul> </div> <div id="navrow2" class="tabs2"> <ul class="tablist"> <li><a href="files.html"><span>File List</span></a></li> <li><a href="globals.html"><span>Globals</span></a></li> </ul> </div> <!-- window showing the filter options --> <div id="MSearchSelectWindow" onmouseover="return searchBox.OnSearchSelectShow()" onmouseout="return searchBox.OnSearchSelectHide()" onkeydown="return searchBox.OnSearchSelectKey(event)"> <a class="SelectItem" href="javascript:void(0)" onclick="searchBox.OnSelectItem(0)"><span class="SelectionMark"> </span>All</a><a class="SelectItem" href="javascript:void(0)" onclick="searchBox.OnSelectItem(1)"><span class="SelectionMark"> </span>Data Structures</a><a class="SelectItem" href="javascript:void(0)" onclick="searchBox.OnSelectItem(2)"><span class="SelectionMark"> </span>Namespaces</a><a class="SelectItem" href="javascript:void(0)" onclick="searchBox.OnSelectItem(3)"><span class="SelectionMark"> </span>Files</a><a class="SelectItem" href="javascript:void(0)" onclick="searchBox.OnSelectItem(4)"><span class="SelectionMark"> </span>Functions</a><a class="SelectItem" href="javascript:void(0)" onclick="searchBox.OnSelectItem(5)"><span class="SelectionMark"> </span>Variables</a><a class="SelectItem" href="javascript:void(0)" onclick="searchBox.OnSelectItem(6)"><span class="SelectionMark"> </span>Typedefs</a><a class="SelectItem" href="javascript:void(0)" onclick="searchBox.OnSelectItem(7)"><span class="SelectionMark"> </span>Enumerations</a><a class="SelectItem" href="javascript:void(0)" onclick="searchBox.OnSelectItem(8)"><span class="SelectionMark"> </span>Enumerator</a><a class="SelectItem" href="javascript:void(0)" onclick="searchBox.OnSelectItem(9)"><span class="SelectionMark"> </span>Friends</a><a class="SelectItem" href="javascript:void(0)" onclick="searchBox.OnSelectItem(10)"><span class="SelectionMark"> </span>Macros</a><a class="SelectItem" href="javascript:void(0)" onclick="searchBox.OnSelectItem(11)"><span class="SelectionMark"> </span>Pages</a></div> <!-- iframe showing the search results (closed by default) --> <div id="MSearchResultsWindow"> <iframe src="javascript:void(0)" frameborder="0" name="MSearchResults" id="MSearchResults"> </iframe> </div> <div id="nav-path" class="navpath"> <ul> <li class="navelem"><a class="el" href="dir_b2f33c71d4aa5e7af42a1ca61ff5af1b.html">source</a></li> </ul> </div> </div><!-- top --> <div class="header"> <div class="summary"> <a href="#func-members">Functions</a> | <a href="#var-members">Variables</a> </div> <div class="headertitle"> <div class="title">deuterium.cpp File Reference</div> </div> </div><!--header--> <div class="contents"> <div class="textblock"><code>#include "<a class="el" href="cddefines_8h_source.html">cddefines.h</a>"</code><br/> <code>#include "<a class="el" href="deuterium_8h_source.html">deuterium.h</a>"</code><br/> <code>#include "<a class="el" href="dense_8h_source.html">dense.h</a>"</code><br/> <code>#include "<a class="el" href="mole_8h_source.html">mole.h</a>"</code><br/> </div><div class="textblock"><div class="dynheader"> Include dependency graph for deuterium.cpp:</div> <div class="dyncontent"> <div class="center"><img src="deuterium_8cpp__incl.png" border="0" usemap="#_2home_2iurt_2rpmbuild_2_b_u_i_l_d_2c13_801_2source_2deuterium_8cpp" alt=""/></div> <map name="_2home_2iurt_2rpmbuild_2_b_u_i_l_d_2c13_801_2source_2deuterium_8cpp" id="_2home_2iurt_2rpmbuild_2_b_u_i_l_d_2c13_801_2source_2deuterium_8cpp"> <area shape="rect" id="node2" href="cddefines_8h.html" title="cddefines.h" alt="" coords="1270,109,1359,136"/><area shape="rect" id="node33" href="deuterium_8h.html" title="deuterium.h" alt="" coords="2793,109,2884,136"/><area shape="rect" id="node34" href="dense_8h.html" title="dense.h" alt="" coords="2909,109,2976,136"/><area shape="rect" id="node45" href="mole_8h.html" title="mole.h" alt="" coords="3063,259,3124,285"/><area shape="rect" id="node3" href="cdstd_8h.html" title="cdstd.h" alt="" coords="2550,184,2615,211"/><area shape="rect" id="node27" href="cloudyconfig_8h.html" title="cloudyconfig.h" alt="" coords="1813,184,1920,211"/><area shape="rect" id="node28" href="cpu_8h.html" title="cpu.h" alt="" coords="1945,184,1999,211"/><area shape="rect" id="node29" href="container__classes_8h.html" title="container_classes.h" alt="" coords="2024,184,2163,211"/><area shape="rect" id="node30" href="iter__track_8h.html" title="iter_track.h" alt="" coords="2187,184,2273,211"/><area shape="rect" id="node31" href="lines__service_8h.html" title="lines_service.h" alt="" coords="2299,184,2408,211"/><area shape="rect" id="node32" href="physconst_8h.html" title="physconst.h" alt="" coords="2432,184,2525,211"/><area shape="rect" id="node35" href="iso_8h.html" title="iso.h" alt="" coords="2917,184,2968,211"/><area shape="rect" id="node36" href="two__photon_8h.html" title="two_photon.h" alt="" coords="2773,259,2872,285"/><area shape="rect" id="node37" href="transition_8h.html" title="transition.h" alt="" coords="2949,333,3035,360"/><area shape="rect" id="node44" href="freebound_8h.html" title="freebound.h" alt="" coords="2897,259,2988,285"/><area shape="rect" id="node38" href="count__ptr_8h.html" title="count_ptr.h" alt="" coords="3173,408,3259,435"/><area shape="rect" id="node39" href="emission_8h.html" title="emission.h" alt="" coords="2823,408,2908,435"/><area shape="rect" id="node40" href="proxy__iterator_8h.html" title="proxy_iterator.h" alt="" coords="2809,483,2920,509"/><area shape="rect" id="node41" href="collision_8h.html" title="collision.h" alt="" coords="2932,408,3011,435"/><area shape="rect" id="node42" href="quantumstate_8h.html" title="quantumstate.h" alt="" coords="3036,408,3147,435"/><area shape="rect" id="node43" href="energy_8h.html" title="energy.h" alt="" coords="3056,483,3128,509"/><area shape="rect" id="node46" href="elementnames_8h.html" title="elementnames.h" alt="" coords="3131,333,3249,360"/></map> </div> </div> <p><a href="deuterium_8cpp_source.html">Go to the source code of this file.</a></p> <table class="memberdecls"> <tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="func-members"></a> Functions</h2></td></tr> <tr class="memitem:ac9593c885ebd51380999b030b2ba8b52"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="deuterium_8cpp.html#ac9593c885ebd51380999b030b2ba8b52">ScaleDensitiesDeuterium</a> (const <a class="el" href="cddefines_8h.html#a9aeda5ccf905f7d5241c0fe35434c820">realnum</a> &factor)</td></tr> <tr class="separator:ac9593c885ebd51380999b030b2ba8b52"><td class="memSeparator" colspan="2"> </td></tr> <tr class="memitem:a35e770591c203fd1ce99c1c081894ffa"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="deuterium_8cpp.html#a35e770591c203fd1ce99c1c081894ffa">InitDeuteriumIonization</a> ()</td></tr> <tr class="separator:a35e770591c203fd1ce99c1c081894ffa"><td class="memSeparator" colspan="2"> </td></tr> <tr class="memitem:abc50ac93a9e5775bd63e52e0f8672249"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="deuterium_8cpp.html#abc50ac93a9e5775bd63e52e0f8672249">SetDeuteriumIonization</a> (const double &xNeutral, const double &xIonized)</td></tr> <tr class="separator:abc50ac93a9e5775bd63e52e0f8672249"><td class="memSeparator" colspan="2"> </td></tr> <tr class="memitem:a74de7461989f4fc00517aaae08348549"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="deuterium_8cpp.html#a74de7461989f4fc00517aaae08348549">SetDeuteriumFractionation</a> (const <a class="el" href="cddefines_8h.html#a9aeda5ccf905f7d5241c0fe35434c820">realnum</a> &frac)</td></tr> <tr class="separator:a74de7461989f4fc00517aaae08348549"><td class="memSeparator" colspan="2"> </td></tr> <tr class="memitem:a2b8dcc143a9cecf0b856b2da46f948fb"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="deuterium_8cpp.html#a2b8dcc143a9cecf0b856b2da46f948fb">SetGasPhaseDeuterium</a> (const <a class="el" href="cddefines_8h.html#a9aeda5ccf905f7d5241c0fe35434c820">realnum</a> &Hdensity)</td></tr> <tr class="separator:a2b8dcc143a9cecf0b856b2da46f948fb"><td class="memSeparator" colspan="2"> </td></tr> </table><table class="memberdecls"> <tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="var-members"></a> Variables</h2></td></tr> <tr class="memitem:a928b85710ead84e5b6e410380a4482c9"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classt__deuterium.html">t_deuterium</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="deuterium_8cpp.html#a928b85710ead84e5b6e410380a4482c9">deut</a></td></tr> <tr class="separator:a928b85710ead84e5b6e410380a4482c9"><td class="memSeparator" colspan="2"> </td></tr> </table> <h2 class="groupheader">Function Documentation</h2> <a class="anchor" id="a35e770591c203fd1ce99c1c081894ffa"></a> <div class="memitem"> <div class="memproto"> <table class="memname"> <tr> <td class="memname">void InitDeuteriumIonization </td> <td>(</td> <td class="paramname"></td><td>)</td> <td></td> </tr> </table> </div><div class="memdoc"> <p>Definition at line <a class="el" href="deuterium_8cpp_source.html#l00019">19</a> of file <a class="el" href="deuterium_8cpp_source.html">deuterium.cpp</a>.</p> <p>References <a class="el" href="deuterium_8h_source.html#l00020">t_deuterium::gas_phase</a>, and <a class="el" href="deuterium_8h_source.html#l00021">t_deuterium::xIonDense</a>.</p> <p>Referenced by <a class="el" href="mole__species_8cpp_source.html#l00140">t_mole_global::make_species()</a>.</p> </div> </div> <a class="anchor" id="ac9593c885ebd51380999b030b2ba8b52"></a> <div class="memitem"> <div class="memproto"> <table class="memname"> <tr> <td class="memname">void ScaleDensitiesDeuterium </td> <td>(</td> <td class="paramtype">const <a class="el" href="cddefines_8h.html#a9aeda5ccf905f7d5241c0fe35434c820">realnum</a> & </td> <td class="paramname"><em>factor</em></td><td>)</td> <td></td> </tr> </table> </div><div class="memdoc"> <p>Definition at line <a class="el" href="deuterium_8cpp_source.html#l00010">10</a> of file <a class="el" href="deuterium_8cpp_source.html">deuterium.cpp</a>.</p> <p>References <a class="el" href="deuterium_8h_source.html#l00020">t_deuterium::gas_phase</a>, <a class="el" href="deuterium_8h_source.html#l00021">t_deuterium::xIonDense</a>, and <a class="el" href="deuterium_8h_source.html#l00022">t_deuterium::xMolecules</a>.</p> <p>Referenced by <a class="el" href="dense_8cpp_source.html#l00070">ScaleIonDensities()</a>.</p> </div> </div> <a class="anchor" id="a74de7461989f4fc00517aaae08348549"></a> <div class="memitem"> <div class="memproto"> <table class="memname"> <tr> <td class="memname">void SetDeuteriumFractionation </td> <td>(</td> <td class="paramtype">const <a class="el" href="cddefines_8h.html#a9aeda5ccf905f7d5241c0fe35434c820">realnum</a> & </td> <td class="paramname"><em>frac</em></td><td>)</td> <td></td> </tr> </table> </div><div class="memdoc"> <p>Definition at line <a class="el" href="deuterium_8cpp_source.html#l00061">61</a> of file <a class="el" href="deuterium_8cpp_source.html">deuterium.cpp</a>.</p> <p>References <a class="el" href="deuterium_8h_source.html#l00023">t_deuterium::fractionation</a>, and <a class="el" href="deuterium_8h_source.html#l00019">t_deuterium::lgElmtOn</a>.</p> <p>Referenced by <a class="el" href="mole__species_8cpp_source.html#l00140">t_mole_global::make_species()</a>.</p> </div> </div> <a class="anchor" id="abc50ac93a9e5775bd63e52e0f8672249"></a> <div class="memitem"> <div class="memproto"> <table class="memname"> <tr> <td class="memname">void SetDeuteriumIonization </td> <td>(</td> <td class="paramtype">const double & </td> <td class="paramname"><em>xNeutral</em>, </td> </tr> <tr> <td class="paramkey"></td> <td></td> <td class="paramtype">const double & </td> <td class="paramname"><em>xIonized</em> </td> </tr> <tr> <td></td> <td>)</td> <td></td><td></td> </tr> </table> </div><div class="memdoc"> <p>Definition at line <a class="el" href="deuterium_8cpp_source.html#l00026">26</a> of file <a class="el" href="deuterium_8cpp_source.html">deuterium.cpp</a>.</p> <p>References <a class="el" href="dense_8cpp_source.html#l00024">dense</a>, <a class="el" href="dense_8h_source.html#l00190">t_dense::eden</a>, <a class="el" href="mole__reactions_8cpp_source.html#l03885">t_mole_local::findrk()</a>, <a class="el" href="service_8cpp_source.html#l00991">fixit()</a>, <a class="el" href="deuterium_8h_source.html#l00020">t_deuterium::gas_phase</a>, <a class="el" href="deuterium_8h_source.html#l00019">t_deuterium::lgElmtOn</a>, <a class="el" href="mole_8cpp_source.html#l00007">mole</a>, <a class="el" href="cpu_8h_source.html#l00178">SMALLFLOAT</a>, <a class="el" href="mole__species_8cpp_source.html#l01033">total_molecule_deut()</a>, <a class="el" href="deuterium_8h_source.html#l00021">t_deuterium::xIonDense</a>, and <a class="el" href="deuterium_8h_source.html#l00022">t_deuterium::xMolecules</a>.</p> <p>Referenced by <a class="el" href="conv__base_8cpp_source.html#l00163">ConvBase()</a>.</p> <p><div class="dynheader"> Here is the call graph for this function:</div> <div class="dyncontent"> <div class="center"><img src="deuterium_8cpp_abc50ac93a9e5775bd63e52e0f8672249_cgraph.png" border="0" usemap="#deuterium_8cpp_abc50ac93a9e5775bd63e52e0f8672249_cgraph" alt=""/></div> <map name="deuterium_8cpp_abc50ac93a9e5775bd63e52e0f8672249_cgraph" id="deuterium_8cpp_abc50ac93a9e5775bd63e52e0f8672249_cgraph"> <area shape="rect" id="node2" href="classt__mole__local.html#aba91523f0d9ef4a59718f8b2aa2e0f9b" title="t_mole_local::findrk" alt="" coords="215,31,350,57"/><area shape="rect" id="node9" href="cddefines_8h.html#af99f8430a8e7473900be47771ebf7ae8" title="fixit" alt="" coords="261,81,304,108"/><area shape="rect" id="node10" href="mole_8h.html#afcb3632a3b2f51327fbfdd1051c7ecb3" title="total_molecule_deut" alt="" coords="213,132,352,159"/><area shape="rect" id="node3" href="mole_8h.html#a1b88b6040a47001ce6ce49993172b1d9" title="mole_findrate_s" alt="" coords="400,31,515,57"/><area shape="rect" id="node4" href="mole__reactions_8cpp.html#a42391f642b85ac13604cb4a7ae3f1f31" title="canonicalize_reaction\l_label" alt="" coords="563,23,709,65"/><area shape="rect" id="node5" href="mole__reactions_8cpp.html#a48ef3570392e6874235f76642161e42c" title="parse_reaction" alt="" coords="777,5,884,32"/><area shape="rect" id="node7" href="mole__reactions_8cpp.html#ac6ee43f3c9041f048e8ca96e15256d5d" title="canonicalize_reaction" alt="" coords="757,56,904,83"/><area shape="rect" id="node6" href="mole_8h.html#ac716a539ae334e43dd95e4431e99c1c7" title="findspecies" alt="" coords="975,5,1063,32"/><area shape="rect" id="node8" href="classt__mole__global.html#af2558bd64c2afc09022f52b852dd55b5" title="t_mole_global::sort" alt="" coords="953,56,1085,83"/></map> </div> </p> </div> </div> <a class="anchor" id="a2b8dcc143a9cecf0b856b2da46f948fb"></a> <div class="memitem"> <div class="memproto"> <table class="memname"> <tr> <td class="memname">void SetGasPhaseDeuterium </td> <td>(</td> <td class="paramtype">const <a class="el" href="cddefines_8h.html#a9aeda5ccf905f7d5241c0fe35434c820">realnum</a> & </td> <td class="paramname"><em>Hdensity</em></td><td>)</td> <td></td> </tr> </table> </div><div class="memdoc"> <p>Definition at line <a class="el" href="deuterium_8cpp_source.html#l00069">69</a> of file <a class="el" href="deuterium_8cpp_source.html">deuterium.cpp</a>.</p> <p>References <a class="el" href="deuterium_8h_source.html#l00023">t_deuterium::fractionation</a>, <a class="el" href="deuterium_8h_source.html#l00020">t_deuterium::gas_phase</a>, and <a class="el" href="deuterium_8h_source.html#l00019">t_deuterium::lgElmtOn</a>.</p> <p>Referenced by <a class="el" href="mole__species_8cpp_source.html#l00140">t_mole_global::make_species()</a>, and <a class="el" href="dense_8cpp_source.html#l00086">t_dense::SetGasPhaseDensity()</a>.</p> </div> </div> <h2 class="groupheader">Variable Documentation</h2> <a class="anchor" id="a928b85710ead84e5b6e410380a4482c9"></a> <div class="memitem"> <div class="memproto"> <table class="memname"> <tr> <td class="memname"><a class="el" href="classt__deuterium.html">t_deuterium</a> deut</td> </tr> </table> </div><div class="memdoc"> <p>Definition at line <a class="el" href="deuterium_8cpp_source.html#l00008">8</a> of file <a class="el" href="deuterium_8cpp_source.html">deuterium.cpp</a>.</p> <p>Referenced by <a class="el" href="conv__base_8cpp_source.html#l00163">ConvBase()</a>, <a class="el" href="eden__sum_8cpp_source.html#l00018">eden_sum()</a>, <a class="el" href="heat__sum_8cpp_source.html#l00033">HeatSum()</a>, <a class="el" href="init__sim__postparse_8cpp_source.html#l00034">InitSimPostparse()</a>, <a class="el" href="iter__startend_8cpp_source.html#l00771">IterRestart()</a>, <a class="el" href="iter__startend_8cpp_source.html#l00089">IterStart()</a>, <a class="el" href="mole__species_8cpp_source.html#l00140">t_mole_global::make_species()</a>, <a class="el" href="mole__reactions_8cpp_source.html#l01665">mole_create_react()</a>, <a class="el" href="mole__h2__form_8cpp_source.html#l00015">diatomics::mole_H2_form()</a>, <a class="el" href="mole__species_8cpp_source.html#l00934">mole_return_cached_species()</a>, <a class="el" href="parse__atom__h2_8cpp_source.html#l00013">ParseAtomH2()</a>, <a class="el" href="dense_8cpp_source.html#l00070">ScaleIonDensities()</a>, <a class="el" href="dense_8cpp_source.html#l00086">t_dense::SetGasPhaseDensity()</a>, <a class="el" href="mole__solve_8cpp_source.html#l00565">GroupMap::setup()</a>, and <a class="el" href="mole__species_8cpp_source.html#l01033">total_molecule_deut()</a>.</p> </div> </div> </div><!-- contents --> <!-- start footer part --> <hr class="footer"/><address class="footer"><small> Generated on Sat Oct 19 2013 10:43:53 for cloudy by  <a href="http://www.doxygen.org/index.html"> <img class="footer" src="doxygen.png" alt="doxygen"/> </a> 1.8.5 </small></address> </body> </html>