<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd"> <html xmlns="http://www.w3.org/1999/xhtml"> <head> <meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/> <meta http-equiv="X-UA-Compatible" content="IE=9"/> <meta name="generator" content="Doxygen 1.8.5"/> <title>cloudy: /home/iurt/rpmbuild/BUILD/c13.01/source/h2.cpp File Reference</title> <link href="tabs.css" rel="stylesheet" type="text/css"/> <script type="text/javascript" src="jquery.js"></script> <script type="text/javascript" src="dynsections.js"></script> <link href="search/search.css" rel="stylesheet" type="text/css"/> <script type="text/javascript" src="search/search.js"></script> <script type="text/javascript"> $(document).ready(function() { searchBox.OnSelectItem(0); }); </script> <link href="doxygen.css" rel="stylesheet" type="text/css" /> </head> <body> <div id="top"><!-- do not remove this div, it is closed by doxygen! --> <div id="titlearea"> <table cellspacing="0" cellpadding="0"> <tbody> <tr style="height: 56px;"> <td style="padding-left: 0.5em;"> <div id="projectname">cloudy  <span id="projectnumber">trunk</span> </div> </td> </tr> </tbody> </table> </div> <!-- end header part --> <!-- Generated by Doxygen 1.8.5 --> <script type="text/javascript"> var searchBox = new SearchBox("searchBox", "search",false,'Search'); </script> <div id="navrow1" class="tabs"> <ul class="tablist"> <li><a href="index.html"><span>Main Page</span></a></li> <li><a href="pages.html"><span>Related Pages</span></a></li> <li><a href="namespaces.html"><span>Namespaces</span></a></li> <li><a href="annotated.html"><span>Data Structures</span></a></li> <li class="current"><a href="files.html"><span>Files</span></a></li> <li> <div id="MSearchBox" class="MSearchBoxInactive"> <span class="left"> <img id="MSearchSelect" src="search/mag_sel.png" onmouseover="return searchBox.OnSearchSelectShow()" onmouseout="return searchBox.OnSearchSelectHide()" alt=""/> <input type="text" id="MSearchField" value="Search" accesskey="S" onfocus="searchBox.OnSearchFieldFocus(true)" onblur="searchBox.OnSearchFieldFocus(false)" onkeyup="searchBox.OnSearchFieldChange(event)"/> </span><span class="right"> <a id="MSearchClose" href="javascript:searchBox.CloseResultsWindow()"><img id="MSearchCloseImg" border="0" src="search/close.png" alt=""/></a> </span> </div> </li> </ul> </div> <div id="navrow2" class="tabs2"> <ul class="tablist"> <li><a href="files.html"><span>File List</span></a></li> <li><a href="globals.html"><span>Globals</span></a></li> </ul> </div> <!-- window showing the filter options --> <div id="MSearchSelectWindow" onmouseover="return searchBox.OnSearchSelectShow()" onmouseout="return searchBox.OnSearchSelectHide()" onkeydown="return searchBox.OnSearchSelectKey(event)"> <a class="SelectItem" href="javascript:void(0)" onclick="searchBox.OnSelectItem(0)"><span class="SelectionMark"> </span>All</a><a class="SelectItem" href="javascript:void(0)" onclick="searchBox.OnSelectItem(1)"><span class="SelectionMark"> </span>Data Structures</a><a class="SelectItem" href="javascript:void(0)" onclick="searchBox.OnSelectItem(2)"><span class="SelectionMark"> </span>Namespaces</a><a class="SelectItem" href="javascript:void(0)" onclick="searchBox.OnSelectItem(3)"><span class="SelectionMark"> </span>Files</a><a class="SelectItem" href="javascript:void(0)" onclick="searchBox.OnSelectItem(4)"><span class="SelectionMark"> </span>Functions</a><a class="SelectItem" href="javascript:void(0)" onclick="searchBox.OnSelectItem(5)"><span class="SelectionMark"> </span>Variables</a><a class="SelectItem" href="javascript:void(0)" onclick="searchBox.OnSelectItem(6)"><span class="SelectionMark"> </span>Typedefs</a><a class="SelectItem" href="javascript:void(0)" onclick="searchBox.OnSelectItem(7)"><span class="SelectionMark"> </span>Enumerations</a><a class="SelectItem" href="javascript:void(0)" onclick="searchBox.OnSelectItem(8)"><span class="SelectionMark"> </span>Enumerator</a><a class="SelectItem" href="javascript:void(0)" onclick="searchBox.OnSelectItem(9)"><span class="SelectionMark"> </span>Friends</a><a class="SelectItem" href="javascript:void(0)" onclick="searchBox.OnSelectItem(10)"><span class="SelectionMark"> </span>Macros</a><a class="SelectItem" href="javascript:void(0)" onclick="searchBox.OnSelectItem(11)"><span class="SelectionMark"> </span>Pages</a></div> <!-- iframe showing the search results (closed by default) --> <div id="MSearchResultsWindow"> <iframe src="javascript:void(0)" frameborder="0" name="MSearchResults" id="MSearchResults"> </iframe> </div> <div id="nav-path" class="navpath"> <ul> <li class="navelem"><a class="el" href="dir_b2f33c71d4aa5e7af42a1ca61ff5af1b.html">source</a></li> </ul> </div> </div><!-- top --> <div class="header"> <div class="summary"> <a href="#func-members">Functions</a> | <a href="#var-members">Variables</a> </div> <div class="headertitle"> <div class="title">h2.cpp File Reference</div> </div> </div><!--header--> <div class="contents"> <div class="textblock"><code>#include "<a class="el" href="cddefines_8h_source.html">cddefines.h</a>"</code><br/> <code>#include "<a class="el" href="h2_8h_source.html">h2.h</a>"</code><br/> <code>#include "<a class="el" href="h2__priv_8h_source.html">h2_priv.h</a>"</code><br/> <code>#include "<a class="el" href="hmi_8h_source.html">hmi.h</a>"</code><br/> </div><div class="textblock"><div class="dynheader"> Include dependency graph for h2.cpp:</div> <div class="dyncontent"> <div class="center"><img src="h2_8cpp__incl.png" border="0" usemap="#_2home_2iurt_2rpmbuild_2_b_u_i_l_d_2c13_801_2source_2h2_8cpp" alt=""/></div> <map name="_2home_2iurt_2rpmbuild_2_b_u_i_l_d_2c13_801_2source_2h2_8cpp" id="_2home_2iurt_2rpmbuild_2_b_u_i_l_d_2c13_801_2source_2h2_8cpp"> <area shape="rect" id="node2" href="cddefines_8h.html" title="cddefines.h" alt="" coords="1287,259,1376,285"/><area shape="rect" id="node33" href="h2_8h.html" title="h2.h" alt="" coords="2775,109,2821,136"/><area shape="rect" id="node34" href="h2__priv_8h.html" title="h2_priv.h" alt="" coords="2823,184,2896,211"/><area shape="rect" id="node46" href="hmi_8h.html" title="hmi.h" alt="" coords="2898,109,2952,136"/><area shape="rect" id="node3" href="cdstd_8h.html" title="cdstd.h" alt="" coords="2277,333,2341,360"/><area shape="rect" id="node27" href="cloudyconfig_8h.html" title="cloudyconfig.h" alt="" coords="1540,333,1647,360"/><area shape="rect" id="node28" href="cpu_8h.html" title="cpu.h" alt="" coords="1671,333,1725,360"/><area shape="rect" id="node29" href="container__classes_8h.html" title="container_classes.h" alt="" coords="1751,333,1889,360"/><area shape="rect" id="node30" href="iter__track_8h.html" title="iter_track.h" alt="" coords="1914,333,2000,360"/><area shape="rect" id="node31" href="lines__service_8h.html" title="lines_service.h" alt="" coords="2025,333,2135,360"/><area shape="rect" id="node32" href="physconst_8h.html" title="physconst.h" alt="" coords="2159,333,2252,360"/><area shape="rect" id="node35" href="transition_8h.html" title="transition.h" alt="" coords="3053,333,3139,360"/><area shape="rect" id="node42" href="parser_8h.html" title="parser.h" alt="" coords="2768,259,2837,285"/><area shape="rect" id="node44" href="mole_8h.html" title="mole.h" alt="" coords="2915,259,2976,285"/><area shape="rect" id="node36" href="count__ptr_8h.html" title="count_ptr.h" alt="" coords="2825,408,2911,435"/><area shape="rect" id="node37" href="emission_8h.html" title="emission.h" alt="" coords="3176,408,3261,435"/><area shape="rect" id="node38" href="proxy__iterator_8h.html" title="proxy_iterator.h" alt="" coords="3159,483,3269,509"/><area shape="rect" id="node39" href="collision_8h.html" title="collision.h" alt="" coords="2936,408,3015,435"/><area shape="rect" id="node40" href="quantumstate_8h.html" title="quantumstate.h" alt="" coords="3040,408,3151,435"/><area shape="rect" id="node41" href="energy_8h.html" title="energy.h" alt="" coords="3060,483,3132,509"/><area shape="rect" id="node45" href="elementnames_8h.html" title="elementnames.h" alt="" coords="2858,333,2976,360"/></map> </div> </div> <p><a href="h2_8cpp_source.html">Go to the source code of this file.</a></p> <table class="memberdecls"> <tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="func-members"></a> Functions</h2></td></tr> <tr class="memitem:a593cd424c8dd76369e8b114f7b484351"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="h2_8cpp.html#a593cd424c8dd76369e8b114f7b484351">diatoms_init</a> (void)</td></tr> <tr class="separator:a593cd424c8dd76369e8b114f7b484351"><td class="memSeparator" colspan="2"> </td></tr> </table><table class="memberdecls"> <tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="var-members"></a> Variables</h2></td></tr> <tr class="memitem:acebab186cf3c20150eb67c5505c4433e"><td class="memItemLeft" align="right" valign="top">vector< <a class="el" href="classdiatomics.html">diatomics</a> * > </td><td class="memItemRight" valign="bottom"><a class="el" href="h2_8cpp.html#acebab186cf3c20150eb67c5505c4433e">diatoms</a></td></tr> <tr class="separator:acebab186cf3c20150eb67c5505c4433e"><td class="memSeparator" colspan="2"> </td></tr> <tr class="memitem:abdb9830c1e377d61cfc1cf1f73169ffe"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classdiatomics.html">diatomics</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="h2_8cpp.html#abdb9830c1e377d61cfc1cf1f73169ffe">h2</a> ("h2", 4100.,&hmi.H2_total, <a class="el" href="mole__h2__etc_8cpp.html#a37ab8585cf7f4f7ee1d2db4b74a34c61">Yan_H2_CS</a>)</td></tr> <tr class="separator:abdb9830c1e377d61cfc1cf1f73169ffe"><td class="memSeparator" colspan="2"> </td></tr> <tr class="memitem:ae09b91958488427b4b2f812675954c51"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classdiatomics.html">diatomics</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="h2_8cpp.html#ae09b91958488427b4b2f812675954c51">hd</a> ("hd", 4100.,&hmi.HD_total, <a class="el" href="mole__h2__etc_8cpp.html#a37ab8585cf7f4f7ee1d2db4b74a34c61">Yan_H2_CS</a>)</td></tr> <tr class="separator:ae09b91958488427b4b2f812675954c51"><td class="memSeparator" colspan="2"> </td></tr> </table> <h2 class="groupheader">Function Documentation</h2> <a class="anchor" id="a593cd424c8dd76369e8b114f7b484351"></a> <div class="memitem"> <div class="memproto"> <table class="memname"> <tr> <td class="memname">void diatoms_init </td> <td>(</td> <td class="paramtype">void </td> <td class="paramname"></td><td>)</td> <td></td> </tr> </table> </div><div class="memdoc"> <p>Definition at line <a class="el" href="h2_8cpp_source.html#l00013">13</a> of file <a class="el" href="h2_8cpp_source.html">h2.cpp</a>.</p> <p>References <a class="el" href="h2__priv_8h_source.html#l00313">diatomics::coll_source</a>, <a class="el" href="cddefines_8h_source.html#l00688">DEBUG_ENTRY</a>, <a class="el" href="h2_8cpp_source.html#l00008">diatoms</a>, <a class="el" href="h2__priv_8h_source.html#l00056">t_coll_source::filename</a>, <a class="el" href="h2_8cpp.html#abdb9830c1e377d61cfc1cf1f73169ffe">h2</a>, <a class="el" href="h2_8cpp.html#ae09b91958488427b4b2f812675954c51">hd</a>, and <a class="el" href="h2__priv_8h_source.html#l00054">t_coll_source::magic</a>.</p> <p>Referenced by <a class="el" href="init__coreload_8cpp_source.html#l00042">InitCoreload()</a>.</p> </div> </div> <h2 class="groupheader">Variable Documentation</h2> <a class="anchor" id="acebab186cf3c20150eb67c5505c4433e"></a> <div class="memitem"> <div class="memproto"> <table class="memname"> <tr> <td class="memname">vector<<a class="el" href="classdiatomics.html">diatomics</a>*> diatoms</td> </tr> </table> </div><div class="memdoc"> <p>Definition at line <a class="el" href="h2_8cpp_source.html#l00008">8</a> of file <a class="el" href="h2_8cpp_source.html">h2.cpp</a>.</p> <p>Referenced by <a class="el" href="cont__createpointers_8cpp_source.html#l00056">ContCreatePointers()</a>, <a class="el" href="conv__base_8cpp_source.html#l00163">ConvBase()</a>, <a class="el" href="cool__eval_8cpp_source.html#l00045">CoolEvaluate()</a>, <a class="el" href="h2_8cpp_source.html#l00013">diatoms_init()</a>, <a class="el" href="heat__sum_8cpp_source.html#l00033">HeatSum()</a>, <a class="el" href="init__sim__postparse_8cpp_source.html#l00034">InitSimPostparse()</a>, <a class="el" href="iter__startend_8cpp_source.html#l00771">IterRestart()</a>, <a class="el" href="iter__startend_8cpp_source.html#l00089">IterStart()</a>, <a class="el" href="prt__lines__molecules_8cpp_source.html#l00019">lines_molecules()</a>, <a class="el" href="mole__reactions_8cpp_source.html#l03268">mole_h_reactions()</a>, <a class="el" href="opacity__addtotal_8cpp_source.html#l00027">OpacityAddTotal()</a>, <a class="el" href="opacity__createall_8cpp_source.html#l00126">OpacityCreateAll()</a>, <a class="el" href="pressure__total_8cpp_source.html#l00034">PresTotCurrent()</a>, <a class="el" href="prt__linepres_8cpp_source.html#l00016">PrtLinePres()</a>, <a class="el" href="prt__met_8cpp_source.html#l00015">prtmet()</a>, <a class="el" href="prt__zone_8cpp_source.html#l00036">PrtZone()</a>, <a class="el" href="radius__next_8cpp_source.html#l00057">radius_next()</a>, <a class="el" href="rt__diffuse_8cpp_source.html#l00034">RT_diffuse()</a>, <a class="el" href="rt__line__all_8cpp_source.html#l00026">RT_line_all()</a>, <a class="el" href="rt__line__driving_8cpp_source.html#l00016">RT_line_driving()</a>, <a class="el" href="rt__ots_8cpp_source.html#l00039">RT_OTS()</a>, <a class="el" href="rt__tau__inc_8cpp_source.html#l00027">RT_tau_inc()</a>, <a class="el" href="rt__tau__init_8cpp_source.html#l00029">RT_tau_init()</a>, <a class="el" href="rt__tau__reset_8cpp_source.html#l00022">RT_tau_reset()</a>, <a class="el" href="save__linedata_8cpp_source.html#l00025">SaveLineData()</a>, and <a class="el" href="zone__startend_8cpp_source.html#l00025">ZoneStart()</a>.</p> </div> </div> <a class="anchor" id="abdb9830c1e377d61cfc1cf1f73169ffe"></a> <div class="memitem"> <div class="memproto"> <table class="memname"> <tr> <td class="memname"><a class="el" href="classdiatomics.html">diatomics</a> h2("h2", 4100.,&hmi.H2_total, <a class="el" href="mole__h2__etc_8cpp.html#a37ab8585cf7f4f7ee1d2db4b74a34c61">Yan_H2_CS</a>)</td> </tr> </table> </div><div class="memdoc"> <p>Referenced by <a class="el" href="grains__mie_8cpp_source.html#l03793">Bruggeman()</a>, <a class="el" href="mole__h2_8cpp_source.html#l02301">cdH2_colden()</a>, <a class="el" href="mole__h2__io_8cpp_source.html#l01915">cdH2_Line()</a>, <a class="el" href="cool__carb_8cpp_source.html#l00022">CoolCarb()</a>, <a class="el" href="cool__eval_8cpp_source.html#l00045">CoolEvaluate()</a>, <a class="el" href="h2_8cpp_source.html#l00013">diatoms_init()</a>, <a class="el" href="mole__reactions_8cpp_source.html#l00690">frac_H2star_hminus()</a>, <a class="el" href="mole__h2_8cpp_source.html#l00175">diatomics::H2_X_coll_rate_evaluate()</a>, <a class="el" href="thirdparty_8cpp_source.html#l03257">humlik()</a>, <a class="el" href="collision_8cpp_source.html#l00044">ColliderList::init()</a>, <a class="el" href="iter__startend_8cpp_source.html#l00771">IterRestart()</a>, <a class="el" href="iter__startend_8cpp_source.html#l00089">IterStart()</a>, <a class="el" href="monitor__results_8cpp_source.html#l01603">lgCheckMonitors()</a>, <a class="el" href="prt__lines__molecules_8cpp_source.html#l00019">lines_molecules()</a>, <a class="el" href="mole__species_8cpp_source.html#l00140">t_mole_global::make_species()</a>, <a class="el" href="molcol_8cpp_source.html#l00012">molcol()</a>, <a class="el" href="mole__drive_8cpp_source.html#l00114">mole_effects()</a>, <a class="el" href="mole__h2__form_8cpp_source.html#l00015">diatomics::mole_H2_form()</a>, <a class="el" href="mole__reactions_8cpp_source.html#l02925">mole_h2_grain_form()</a>, <a class="el" href="mole__solve_8cpp_source.html#l00276">mole_h_fixup()</a>, <a class="el" href="mole__drive_8cpp_source.html#l00418">mole_h_rate_diagnostics()</a>, <a class="el" href="mole__reactions_8cpp_source.html#l03268">mole_h_reactions()</a>, <a class="el" href="cool__oxyg_8cpp_source.html#l00865">oi_othercs()</a>, <a class="el" href="opacity__addtotal_8cpp_source.html#l00027">OpacityAddTotal()</a>, <a class="el" href="parse__atom__h2_8cpp_source.html#l00013">ParseAtomH2()</a>, <a class="el" href="parse__commands_8cpp_source.html#l00090">ParseCommands()</a>, <a class="el" href="parse__print_8cpp_source.html#l00116">ParsePrint()</a>, <a class="el" href="parse__save_8cpp_source.html#l00051">ParseSave()</a>, <a class="el" href="parse__set_8cpp_source.html#l00044">ParseSet()</a>, <a class="el" href="prt__columns_8cpp_source.html#l00014">PrtColumns()</a>, <a class="el" href="prt__comment_8cpp_source.html#l00065">PrtComment()</a>, <a class="el" href="prt__final_8cpp_source.html#l00075">PrtFinal()</a>, <a class="el" href="radius__first_8cpp_source.html#l00026">radius_first()</a>, <a class="el" href="radius__increment_8cpp_source.html#l00034">radius_increment()</a>, <a class="el" href="save__line_8cpp_source.html#l00102">save_line()</a>, <a class="el" href="save__do_8cpp_source.html#l00573">SaveDo()</a>, <a class="el" href="save__do_8cpp_source.html#l04230">SaveLineStuff()</a>, <a class="el" href="dense_8cpp_source.html#l00037">ScaleAllDensities()</a>, <a class="el" href="service_8cpp_source.html#l00181">ShowMe()</a>, <a class="el" href="state_8cpp_source.html#l00076">state_get_put()</a>, and <a class="el" href="grains__mie_8cpp_source.html#l03751">Stognienko()</a>.</p> </div> </div> <a class="anchor" id="ae09b91958488427b4b2f812675954c51"></a> <div class="memitem"> <div class="memproto"> <table class="memname"> <tr> <td class="memname"><a class="el" href="classdiatomics.html">diatomics</a> hd("hd", 4100.,&hmi.HD_total, <a class="el" href="mole__h2__etc_8cpp.html#a37ab8585cf7f4f7ee1d2db4b74a34c61">Yan_H2_CS</a>)</td> </tr> </table> </div><div class="memdoc"> <p>Referenced by <a class="el" href="cool__eval_8cpp_source.html#l00045">CoolEvaluate()</a>, <a class="el" href="h2_8cpp_source.html#l00013">diatoms_init()</a>, <a class="el" href="mole__h2__form_8cpp_source.html#l00015">diatomics::mole_H2_form()</a>, <a class="el" href="parse__atom__h2_8cpp_source.html#l00013">ParseAtomH2()</a>, and <a class="el" href="parse__save_8cpp_source.html#l00051">ParseSave()</a>.</p> </div> </div> </div><!-- contents --> <!-- start footer part --> <hr class="footer"/><address class="footer"><small> Generated on Sat Oct 19 2013 10:43:54 for cloudy by  <a href="http://www.doxygen.org/index.html"> <img class="footer" src="doxygen.png" alt="doxygen"/> </a> 1.8.5 </small></address> </body> </html>