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<div class="title">ion_trim.cpp</div> </div>
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<a href="ion__trim_8cpp.html">Go to the documentation of this file.</a><div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno"> 1</span> <span class="comment">/* This file is part of Cloudy and is copyright (C)1978-2013 by Gary J. Ferland and</span></div>
<div class="line"><a name="l00002"></a><span class="lineno"> 2</span> <span class="comment"> * others. For conditions of distribution and use see copyright notice in license.txt */</span></div>
<div class="line"><a name="l00003"></a><span class="lineno"> 3</span> <span class="comment">/*ion_trim raise or lower most extreme stages of ionization considered,</span></div>
<div class="line"><a name="l00004"></a><span class="lineno"> 4</span> <span class="comment"> * called by ConvBase - ion limits were originally set by */</span></div>
<div class="line"><a name="l00005"></a><span class="lineno"> 5</span> <span class="preprocessor">#include "<a class="code" href="cddefines_8h.html">cddefines.h</a>"</span></div>
<div class="line"><a name="l00006"></a><span class="lineno"> 6</span> <span class="preprocessor">#include "<a class="code" href="elementnames_8h.html">elementnames.h</a>"</span></div>
<div class="line"><a name="l00007"></a><span class="lineno"> 7</span> <span class="preprocessor">#include "<a class="code" href="radius_8h.html">radius.h</a>"</span></div>
<div class="line"><a name="l00008"></a><span class="lineno"> 8</span> <span class="preprocessor">#include "<a class="code" href="heavy_8h.html">heavy.h</a>"</span></div>
<div class="line"><a name="l00009"></a><span class="lineno"> 9</span> <span class="preprocessor">#include "<a class="code" href="conv_8h.html">conv.h</a>"</span></div>
<div class="line"><a name="l00010"></a><span class="lineno"> 10</span> <span class="preprocessor">#include "<a class="code" href="rfield_8h.html">rfield.h</a>"</span></div>
<div class="line"><a name="l00011"></a><span class="lineno"> 11</span> <span class="preprocessor">#include "<a class="code" href="phycon_8h.html">phycon.h</a>"</span></div>
<div class="line"><a name="l00012"></a><span class="lineno"> 12</span> <span class="preprocessor">#include "<a class="code" href="mole_8h.html">mole.h</a>"</span></div>
<div class="line"><a name="l00013"></a><span class="lineno"> 13</span> <span class="preprocessor">#include "<a class="code" href="thermal_8h.html">thermal.h</a>"</span></div>
<div class="line"><a name="l00014"></a><span class="lineno"> 14</span> <span class="preprocessor">#include "<a class="code" href="iso_8h.html">iso.h</a>"</span></div>
<div class="line"><a name="l00015"></a><span class="lineno"> 15</span> <span class="preprocessor">#include "<a class="code" href="dense_8h.html">dense.h</a>"</span></div>
<div class="line"><a name="l00016"></a><span class="lineno"> 16</span> <span class="preprocessor">#include "<a class="code" href="conv_8h.html">conv.h</a>"</span></div>
<div class="line"><a name="l00017"></a><span class="lineno"> 17</span> <span class="preprocessor">#include "<a class="code" href="struc_8h.html">struc.h</a>"</span></div>
<div class="line"><a name="l00018"></a><span class="lineno"> 18</span> <span class="preprocessor">#include "<a class="code" href="ionbal_8h.html">ionbal.h</a>"</span></div>
<div class="line"><a name="l00019"></a><span class="lineno"> 19</span> <span class="preprocessor">#include "<a class="code" href="taulines_8h.html">taulines.h</a>"</span></div>
<div class="line"><a name="l00020"></a><span class="lineno"> 20</span> </div>
<div class="line"><a name="l00021"></a><span class="lineno"><a class="line" href="ionbal_8h.html#a7408f10110a70b5dd9cdb3731d373dcf"> 21</a></span> <span class="keywordtype">void</span> <a class="code" href="ion__trim_8cpp.html#a7408f10110a70b5dd9cdb3731d373dcf">ion_trim</a>(</div>
<div class="line"><a name="l00022"></a><span class="lineno"> 22</span>  <span class="comment">/* nelem is on the C scale, 0 for H, 5 for C */</span></div>
<div class="line"><a name="l00023"></a><span class="lineno"> 23</span>  <span class="keywordtype">long</span> <span class="keywordtype">int</span> nelem )</div>
<div class="line"><a name="l00024"></a><span class="lineno"> 24</span> {</div>
<div class="line"><a name="l00025"></a><span class="lineno"> 25</span> </div>
<div class="line"><a name="l00026"></a><span class="lineno"> 26</span>  <span class="comment">/* this will remember that higher stages trimed up or down */</span></div>
<div class="line"><a name="l00027"></a><span class="lineno"> 27</span>  <span class="keywordtype">bool</span> lgHi_Down = <span class="keyword">false</span>;</div>
<div class="line"><a name="l00028"></a><span class="lineno"> 28</span>  <span class="keywordtype">bool</span> lgHi_Up = <span class="keyword">false</span>;</div>
<div class="line"><a name="l00029"></a><span class="lineno"> 29</span>  <span class="keywordtype">bool</span> lgHi_Up_enable;</div>
<div class="line"><a name="l00030"></a><span class="lineno"> 30</span>  <span class="comment">/* this will remember that lower stages trimmed up or own*/</span></div>
<div class="line"><a name="l00031"></a><span class="lineno"> 31</span>  <span class="keywordtype">bool</span> lgLo_Up = <span class="keyword">false</span>;</div>
<div class="line"><a name="l00032"></a><span class="lineno"> 32</span>  <span class="keywordtype">bool</span> lgLo_Down = <span class="keyword">false</span>;</div>
<div class="line"><a name="l00033"></a><span class="lineno"> 33</span>  <span class="keywordtype">long</span> <span class="keywordtype">int</span> ion_lo_save = <a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a5408647e441ba1163482e2191bcccc80">IonLow</a>[nelem],</div>
<div class="line"><a name="l00034"></a><span class="lineno"> 34</span>  ion_hi_save = <a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a54b5ad4bfa10e31c0d18511f31b54b54">IonHigh</a>[nelem];</div>
<div class="line"><a name="l00035"></a><span class="lineno"> 35</span>  <span class="keywordtype">long</span> <span class="keywordtype">int</span> ion;</div>
<div class="line"><a name="l00036"></a><span class="lineno"> 36</span>  <a class="code" href="cddefines_8h.html#a9aeda5ccf905f7d5241c0fe35434c820">realnum</a> trimhi , trimlo;</div>
<div class="line"><a name="l00037"></a><span class="lineno"> 37</span> </div>
<div class="line"><a name="l00038"></a><span class="lineno"> 38</span>  <span class="comment">/* this is debugging code that turns on print after certain number of calls */</span></div>
<div class="line"><a name="l00039"></a><span class="lineno"> 39</span>  <span class="comment">/*realnum xlimit = SMALLFLOAT *10.;*/</span></div>
<div class="line"><a name="l00040"></a><span class="lineno"> 40</span>  <span class="comment">/*static int ncall=0;</span></div>
<div class="line"><a name="l00041"></a><span class="lineno"> 41</span> <span class="comment"> if( nelem==5 )</span></div>
<div class="line"><a name="l00042"></a><span class="lineno"> 42</span> <span class="comment"> ++ncall;*/</span></div>
<div class="line"><a name="l00043"></a><span class="lineno"> 43</span> </div>
<div class="line"><a name="l00044"></a><span class="lineno"> 44</span>  <a class="code" href="cddefines_8h.html#ada0cfa6927ba3683adc971d17643f2e5">DEBUG_ENTRY</a>( <span class="stringliteral">"ion_trim()"</span> );</div>
<div class="line"><a name="l00045"></a><span class="lineno"> 45</span> </div>
<div class="line"><a name="l00046"></a><span class="lineno"> 46</span>  <span class="comment">/* this routine should not be called early in the simulation, before</span></div>
<div class="line"><a name="l00047"></a><span class="lineno"> 47</span> <span class="comment"> * things have settled down */</span></div>
<div class="line"><a name="l00048"></a><span class="lineno"> 48</span>  <a class="code" href="cddefines_8h.html#a092bd7bb2cb7fd9f483b6995cee61bc0">ASSERT</a>( <a class="code" href="conv_8cpp.html#a02aae728cb00079244fd6d41fefdc959">conv</a>.<a class="code" href="structt__conv.html#a0c89351921596be0d67c8badf77a448e">nTotalIoniz</a>>2 );</div>
<div class="line"><a name="l00049"></a><span class="lineno"> 49</span> </div>
<div class="line"><a name="l00050"></a><span class="lineno"> 50</span>  <span class="comment">/*confirm all ionization stages are within their range of validity */</span></div>
<div class="line"><a name="l00051"></a><span class="lineno"> 51</span>  <a class="code" href="cddefines_8h.html#a092bd7bb2cb7fd9f483b6995cee61bc0">ASSERT</a>( nelem >= <a class="code" href="cddefines_8h.html#a998e102b7d6537d3ef5200647c4b8559">ipHELIUM</a> && nelem < <a class="code" href="cddefines_8h.html#a625741fe64429312469751842aab8216">LIMELM</a> );</div>
<div class="line"><a name="l00052"></a><span class="lineno"> 52</span>  <a class="code" href="cddefines_8h.html#a092bd7bb2cb7fd9f483b6995cee61bc0">ASSERT</a>( <a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a5408647e441ba1163482e2191bcccc80">IonLow</a>[nelem] >= 0 );</div>
<div class="line"><a name="l00053"></a><span class="lineno"> 53</span>  <a class="code" href="cddefines_8h.html#a092bd7bb2cb7fd9f483b6995cee61bc0">ASSERT</a>( <a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a54b5ad4bfa10e31c0d18511f31b54b54">IonHigh</a>[nelem] <= nelem+1 );</div>
<div class="line"><a name="l00054"></a><span class="lineno"> 54</span>  <span class="comment">/* IonHigh can be equal to IonLow */</span></div>
<div class="line"><a name="l00055"></a><span class="lineno"> 55</span>  <a class="code" href="cddefines_8h.html#a092bd7bb2cb7fd9f483b6995cee61bc0">ASSERT</a>( <a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a5408647e441ba1163482e2191bcccc80">IonLow</a>[nelem] <= <a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a54b5ad4bfa10e31c0d18511f31b54b54">IonHigh</a>[nelem] );</div>
<div class="line"><a name="l00056"></a><span class="lineno"> 56</span> </div>
<div class="line"><a name="l00057"></a><span class="lineno"> 57</span>  <span class="comment">/* during search phase of mostly neutral matter the electron density</span></div>
<div class="line"><a name="l00058"></a><span class="lineno"> 58</span> <span class="comment"> * can be vastly too large, and the ionization suppressed as a result.</span></div>
<div class="line"><a name="l00059"></a><span class="lineno"> 59</span> <span class="comment"> * during search do not trim down or up as much */</span></div>
<div class="line"><a name="l00060"></a><span class="lineno"> 60</span>  <span class="keywordflow">if</span>( <a class="code" href="conv_8cpp.html#a02aae728cb00079244fd6d41fefdc959">conv</a>.<a class="code" href="structt__conv.html#af927d37582560e64e2a55704f18aab0b">lgSearch</a> )</div>
<div class="line"><a name="l00061"></a><span class="lineno"> 61</span>  {</div>
<div class="line"><a name="l00062"></a><span class="lineno"> 62</span>  trimhi = (<a class="code" href="cddefines_8h.html#a9aeda5ccf905f7d5241c0fe35434c820">realnum</a>)<a class="code" href="ionbal_8cpp.html#a360ea90b4c4f87f220b366907da0a2be">ionbal</a>.<a class="code" href="classt__ionbal.html#a809b85ce594fd8d39edba1ba15f2fbea">trimhi</a> * 1e-4f;</div>
<div class="line"><a name="l00063"></a><span class="lineno"> 63</span>  trimlo = (<a class="code" href="cddefines_8h.html#a9aeda5ccf905f7d5241c0fe35434c820">realnum</a>)<a class="code" href="ionbal_8cpp.html#a360ea90b4c4f87f220b366907da0a2be">ionbal</a>.<a class="code" href="classt__ionbal.html#abb62488a68782938b1ee56c1d02847ad">trimlo</a> * 1e-4f;</div>
<div class="line"><a name="l00064"></a><span class="lineno"> 64</span>  }</div>
<div class="line"><a name="l00065"></a><span class="lineno"> 65</span>  <span class="keywordflow">else</span></div>
<div class="line"><a name="l00066"></a><span class="lineno"> 66</span>  {</div>
<div class="line"><a name="l00067"></a><span class="lineno"> 67</span>  trimhi = (<a class="code" href="cddefines_8h.html#a9aeda5ccf905f7d5241c0fe35434c820">realnum</a>)<a class="code" href="ionbal_8cpp.html#a360ea90b4c4f87f220b366907da0a2be">ionbal</a>.<a class="code" href="classt__ionbal.html#a809b85ce594fd8d39edba1ba15f2fbea">trimhi</a>;</div>
<div class="line"><a name="l00068"></a><span class="lineno"> 68</span>  trimlo = (<a class="code" href="cddefines_8h.html#a9aeda5ccf905f7d5241c0fe35434c820">realnum</a>)<a class="code" href="ionbal_8cpp.html#a360ea90b4c4f87f220b366907da0a2be">ionbal</a>.<a class="code" href="classt__ionbal.html#abb62488a68782938b1ee56c1d02847ad">trimlo</a>;</div>
<div class="line"><a name="l00069"></a><span class="lineno"> 69</span>  }</div>
<div class="line"><a name="l00070"></a><span class="lineno"> 70</span> </div>
<div class="line"><a name="l00071"></a><span class="lineno"> 71</span>  <span class="comment">/* helium is special case since abundance is so high, and He+ CT with </span></div>
<div class="line"><a name="l00072"></a><span class="lineno"> 72</span> <span class="comment"> * CO is the dominant CO destruction process in molecular regions */</span></div>
<div class="line"><a name="l00073"></a><span class="lineno"> 73</span>  <span class="keywordflow">if</span>( nelem == <a class="code" href="cddefines_8h.html#a998e102b7d6537d3ef5200647c4b8559">ipHELIUM</a> )</div>
<div class="line"><a name="l00074"></a><span class="lineno"> 74</span>  {</div>
<div class="line"><a name="l00075"></a><span class="lineno"> 75</span>  <span class="comment">/* never want to trip up a lower stage of ionization */</span></div>
<div class="line"><a name="l00076"></a><span class="lineno"> 76</span>  trimlo = <a class="code" href="cpu_8h.html#af1d998d79044c9644b48f8d5647d57b6">SMALLFLOAT</a>;</div>
<div class="line"><a name="l00077"></a><span class="lineno"> 77</span> </div>
<div class="line"><a name="l00078"></a><span class="lineno"> 78</span>  <span class="comment">/* if He+ is highest stage of ionization, probably want to keep it</span></div>
<div class="line"><a name="l00079"></a><span class="lineno"> 79</span> <span class="comment"> * since important for CO chemistry in molecular clouds */</span></div>
<div class="line"><a name="l00080"></a><span class="lineno"> 80</span>  <span class="keywordflow">if</span>( <a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a54b5ad4bfa10e31c0d18511f31b54b54">IonHigh</a>[<a class="code" href="cddefines_8h.html#a998e102b7d6537d3ef5200647c4b8559">ipHELIUM</a>] == 1 )</div>
<div class="line"><a name="l00081"></a><span class="lineno"> 81</span>  {</div>
<div class="line"><a name="l00082"></a><span class="lineno"> 82</span>  trimhi = <a class="code" href="cddefines_8h.html#a393053491edc087c17e89d597b6e16f5">MIN2</a>( trimhi , 1e-20f );</div>
<div class="line"><a name="l00083"></a><span class="lineno"> 83</span>  }</div>
<div class="line"><a name="l00084"></a><span class="lineno"> 84</span>  <span class="keywordflow">else</span> <span class="keywordflow">if</span>( <a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a54b5ad4bfa10e31c0d18511f31b54b54">IonHigh</a>[<a class="code" href="cddefines_8h.html#a998e102b7d6537d3ef5200647c4b8559">ipHELIUM</a>] == 2 )</div>
<div class="line"><a name="l00085"></a><span class="lineno"> 85</span>  {</div>
<div class="line"><a name="l00086"></a><span class="lineno"> 86</span>  <span class="keywordflow">if</span>( <a class="code" href="conv_8cpp.html#a02aae728cb00079244fd6d41fefdc959">conv</a>.<a class="code" href="structt__conv.html#af927d37582560e64e2a55704f18aab0b">lgSearch</a> )</div>
<div class="line"><a name="l00087"></a><span class="lineno"> 87</span>  {</div>
<div class="line"><a name="l00088"></a><span class="lineno"> 88</span>  <span class="comment">/* during search phase we may be quite far from solution, in the</span></div>
<div class="line"><a name="l00089"></a><span class="lineno"> 89</span> <span class="comment"> * case of a PDR sim the electron density may be vastly higher </span></div>
<div class="line"><a name="l00090"></a><span class="lineno"> 90</span> <span class="comment"> * than it will be with stable solution. He++ can be very important</span></div>
<div class="line"><a name="l00091"></a><span class="lineno"> 91</span> <span class="comment"> * for the chemistry and we want to consider it. Make the</span></div>
<div class="line"><a name="l00092"></a><span class="lineno"> 92</span> <span class="comment"> * threshold for ignoring He++ much higher than normal to prevent</span></div>
<div class="line"><a name="l00093"></a><span class="lineno"> 93</span> <span class="comment"> * a premature removal of the ion */</span></div>
<div class="line"><a name="l00094"></a><span class="lineno"> 94</span>  trimhi = <a class="code" href="cddefines_8h.html#a393053491edc087c17e89d597b6e16f5">MIN2</a>( trimhi , 1e-17f ); </div>
<div class="line"><a name="l00095"></a><span class="lineno"> 95</span>  }</div>
<div class="line"><a name="l00096"></a><span class="lineno"> 96</span>  <span class="keywordflow">else</span></div>
<div class="line"><a name="l00097"></a><span class="lineno"> 97</span>  {</div>
<div class="line"><a name="l00098"></a><span class="lineno"> 98</span>  <span class="comment">/* similar smaller upper limit for ion*/</span></div>
<div class="line"><a name="l00099"></a><span class="lineno"> 99</span>  trimhi = <a class="code" href="cddefines_8h.html#a393053491edc087c17e89d597b6e16f5">MIN2</a>( trimhi , 1e-12f ); </div>
<div class="line"><a name="l00100"></a><span class="lineno"> 100</span>  }</div>
<div class="line"><a name="l00101"></a><span class="lineno"> 101</span>  }</div>
<div class="line"><a name="l00102"></a><span class="lineno"> 102</span>  }</div>
<div class="line"><a name="l00103"></a><span class="lineno"> 103</span> </div>
<div class="line"><a name="l00104"></a><span class="lineno"> 104</span>  <span class="comment">/* logic for PDRs, for elements included in chemistry, need stable solutions, </span></div>
<div class="line"><a name="l00105"></a><span class="lineno"> 105</span> <span class="comment"> * keep 3 ion stages in most cases - added by NA to do HII/PDR sims */</span></div>
<div class="line"><a name="l00106"></a><span class="lineno"> 106</span>  <span class="keywordflow">if</span>( !<a class="code" href="mole_8cpp.html#a31d5a7dde43a2027f9257ef2d3577556">mole_global</a>.<a class="code" href="classt__mole__global.html#ad5b4917bd1a9fab967242f060be50f78">lgNoMole</a> )</div>
<div class="line"><a name="l00107"></a><span class="lineno"> 107</span>  {</div>
<div class="line"><a name="l00108"></a><span class="lineno"> 108</span>  trimlo = <a class="code" href="cpu_8h.html#af1d998d79044c9644b48f8d5647d57b6">SMALLFLOAT</a>;</div>
<div class="line"><a name="l00109"></a><span class="lineno"> 109</span>  <span class="keywordflow">if</span>(<a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a54b5ad4bfa10e31c0d18511f31b54b54">IonHigh</a>[nelem] ==2)</div>
<div class="line"><a name="l00110"></a><span class="lineno"> 110</span>  {</div>
<div class="line"><a name="l00111"></a><span class="lineno"> 111</span>  trimhi = <a class="code" href="cddefines_8h.html#a393053491edc087c17e89d597b6e16f5">MIN2</a>(trimhi, 1e-20f);</div>
<div class="line"><a name="l00112"></a><span class="lineno"> 112</span>  }</div>
<div class="line"><a name="l00113"></a><span class="lineno"> 113</span>  }</div>
<div class="line"><a name="l00114"></a><span class="lineno"> 114</span> </div>
<div class="line"><a name="l00115"></a><span class="lineno"> 115</span>  <span class="comment">/* raise or lower highest and lowest stages of ionization to</span></div>
<div class="line"><a name="l00116"></a><span class="lineno"> 116</span> <span class="comment"> * consider only significant stages</span></div>
<div class="line"><a name="l00117"></a><span class="lineno"> 117</span> <span class="comment"> * IonHigh[nelem] stage of ionization */</span></div>
<div class="line"><a name="l00118"></a><span class="lineno"> 118</span> </div>
<div class="line"><a name="l00119"></a><span class="lineno"> 119</span>  <span class="comment">/* this is a special block for initialization only - it checks on absurd abundances</span></div>
<div class="line"><a name="l00120"></a><span class="lineno"> 120</span> <span class="comment"> * and can trim multiple stages of ionization at one time. */</span></div>
<div class="line"><a name="l00121"></a><span class="lineno"> 121</span>  <span class="keywordflow">if</span>( <a class="code" href="conv_8cpp.html#a02aae728cb00079244fd6d41fefdc959">conv</a>.<a class="code" href="structt__conv.html#af927d37582560e64e2a55704f18aab0b">lgSearch</a> )</div>
<div class="line"><a name="l00122"></a><span class="lineno"> 122</span>  {</div>
<div class="line"><a name="l00123"></a><span class="lineno"> 123</span>  <span class="comment">/* special - trim down higher stages if they have essentially zero abundance */</span></div>
<div class="line"><a name="l00124"></a><span class="lineno"> 124</span>  <span class="keywordflow">while</span>( </div>
<div class="line"><a name="l00125"></a><span class="lineno"> 125</span>  (<a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a9f73720f209b1536b1d32300b52a9845">xIonDense</a>[nelem][<a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a54b5ad4bfa10e31c0d18511f31b54b54">IonHigh</a>[nelem]]/<a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#ac3103e7dcf065b405339072b2c833328">gas_phase</a>[nelem] < <a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a18996563f56d945b7b432d79674b2f28">density_low_limit</a> || </div>
<div class="line"><a name="l00126"></a><span class="lineno"> 126</span>  <a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a9f73720f209b1536b1d32300b52a9845">xIonDense</a>[nelem][<a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a54b5ad4bfa10e31c0d18511f31b54b54">IonHigh</a>[nelem]] < <a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a18996563f56d945b7b432d79674b2f28">density_low_limit</a> ) && </div>
<div class="line"><a name="l00127"></a><span class="lineno"> 127</span>  <span class="comment">/* >>chng 02 may 12, rm +1 since this had effect of not allowing fully atomic */</span></div>
<div class="line"><a name="l00128"></a><span class="lineno"> 128</span>  <a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a54b5ad4bfa10e31c0d18511f31b54b54">IonHigh</a>[nelem] > <a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a5408647e441ba1163482e2191bcccc80">IonLow</a>[nelem] )</div>
<div class="line"><a name="l00129"></a><span class="lineno"> 129</span>  {</div>
<div class="line"><a name="l00130"></a><span class="lineno"> 130</span>  <span class="comment">/* dense.xIonDense[nelem][i] is density of i+1 th ionization stage (cm^-3)</span></div>
<div class="line"><a name="l00131"></a><span class="lineno"> 131</span> <span class="comment"> * the -1 is correct for the heating, -1 since heating is caused by ionization of stage below it */</span></div>
<div class="line"><a name="l00132"></a><span class="lineno"> 132</span>  <a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a9f73720f209b1536b1d32300b52a9845">xIonDense</a>[nelem][<a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a54b5ad4bfa10e31c0d18511f31b54b54">IonHigh</a>[nelem]-1] +=</div>
<div class="line"><a name="l00133"></a><span class="lineno"> 133</span>  <a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a9f73720f209b1536b1d32300b52a9845">xIonDense</a>[nelem][<a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a54b5ad4bfa10e31c0d18511f31b54b54">IonHigh</a>[nelem]];</div>
<div class="line"><a name="l00134"></a><span class="lineno"> 134</span>  <a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a9f73720f209b1536b1d32300b52a9845">xIonDense</a>[nelem][<a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a54b5ad4bfa10e31c0d18511f31b54b54">IonHigh</a>[nelem]] = 0.;</div>
<div class="line"><a name="l00135"></a><span class="lineno"> 135</span>  <a class="code" href="thermal_8cpp.html#aa9fb6393d963cd8537ddeb8735d4eb6a">thermal</a>.<a class="code" href="structt__thermal.html#a199cd035e80c49312e6681be3e5362c5">heating</a>[nelem][<a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a54b5ad4bfa10e31c0d18511f31b54b54">IonHigh</a>[nelem]-1] = 0.;</div>
<div class="line"><a name="l00136"></a><span class="lineno"> 136</span>  <span class="keywordflow">if</span>( <a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a54b5ad4bfa10e31c0d18511f31b54b54">IonHigh</a>[nelem] == nelem+1-<a class="code" href="cddefines_8h.html#a9386366f72568a2cb6ca627b91c6a63f">NISO</a> )</div>
<div class="line"><a name="l00137"></a><span class="lineno"> 137</span>  {</div>
<div class="line"><a name="l00138"></a><span class="lineno"> 138</span>  <span class="keywordtype">long</span> <span class="keywordtype">int</span> ipISO = nelem - <a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a54b5ad4bfa10e31c0d18511f31b54b54">IonHigh</a>[nelem];</div>
<div class="line"><a name="l00139"></a><span class="lineno"> 139</span>  <a class="code" href="cddefines_8h.html#a092bd7bb2cb7fd9f483b6995cee61bc0">ASSERT</a>( ipISO>=0 && ipISO<<a class="code" href="cddefines_8h.html#a9386366f72568a2cb6ca627b91c6a63f">NISO</a> );</div>
<div class="line"><a name="l00140"></a><span class="lineno"> 140</span>  <span class="keywordflow">for</span>( <span class="keywordtype">long</span> level = 0; level < <a class="code" href="iso_8cpp.html#ab57c2051ee65e0236231a59103b5e80c">iso_sp</a>[ipISO][nelem].<a class="code" href="classt__iso__sp.html#a19dcfe5bb72eddf5a23d02ed82bc1d00">numLevels_max</a>; level++ )</div>
<div class="line"><a name="l00141"></a><span class="lineno"> 141</span>  <a class="code" href="iso_8cpp.html#ab57c2051ee65e0236231a59103b5e80c">iso_sp</a>[ipISO][nelem].st[level].Pop() = 0.;</div>
<div class="line"><a name="l00142"></a><span class="lineno"> 142</span>  }</div>
<div class="line"><a name="l00143"></a><span class="lineno"> 143</span> </div>
<div class="line"><a name="l00144"></a><span class="lineno"> 144</span>  <span class="comment">/* decrement high stage limit */</span></div>
<div class="line"><a name="l00145"></a><span class="lineno"> 145</span>  --<a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a54b5ad4bfa10e31c0d18511f31b54b54">IonHigh</a>[nelem];</div>
<div class="line"><a name="l00146"></a><span class="lineno"> 146</span>  <a class="code" href="cddefines_8h.html#a092bd7bb2cb7fd9f483b6995cee61bc0">ASSERT</a>( <a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a54b5ad4bfa10e31c0d18511f31b54b54">IonHigh</a>[nelem] >= 0);</div>
<div class="line"><a name="l00147"></a><span class="lineno"> 147</span>  <span class="comment">/* remember this happened */</span></div>
<div class="line"><a name="l00148"></a><span class="lineno"> 148</span>  lgHi_Down = <span class="keyword">true</span>;</div>
<div class="line"><a name="l00149"></a><span class="lineno"> 149</span>  }</div>
<div class="line"><a name="l00150"></a><span class="lineno"> 150</span> </div>
<div class="line"><a name="l00151"></a><span class="lineno"> 151</span>  <span class="comment">/* special - trim up lower stages trim if they have essentially zero abundance */</span></div>
<div class="line"><a name="l00152"></a><span class="lineno"> 152</span>  <span class="keywordflow">while</span>( </div>
<div class="line"><a name="l00153"></a><span class="lineno"> 153</span>  (<a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a9f73720f209b1536b1d32300b52a9845">xIonDense</a>[nelem][<a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a5408647e441ba1163482e2191bcccc80">IonLow</a>[nelem]]/<a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#ac3103e7dcf065b405339072b2c833328">gas_phase</a>[nelem] < <a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a18996563f56d945b7b432d79674b2f28">density_low_limit</a> || </div>
<div class="line"><a name="l00154"></a><span class="lineno"> 154</span>  <a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a9f73720f209b1536b1d32300b52a9845">xIonDense</a>[nelem][<a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a5408647e441ba1163482e2191bcccc80">IonLow</a>[nelem]] < <a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a18996563f56d945b7b432d79674b2f28">density_low_limit</a> ) && </div>
<div class="line"><a name="l00155"></a><span class="lineno"> 155</span>  <a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a5408647e441ba1163482e2191bcccc80">IonLow</a>[nelem] < <a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a54b5ad4bfa10e31c0d18511f31b54b54">IonHigh</a>[nelem] - 1 )</div>
<div class="line"><a name="l00156"></a><span class="lineno"> 156</span>  {</div>
<div class="line"><a name="l00157"></a><span class="lineno"> 157</span>  <span class="comment">/* dense.xIonDense[nelem][i] is density of ith ionization stage (cm^-3)</span></div>
<div class="line"><a name="l00158"></a><span class="lineno"> 158</span> <span class="comment"> * there is no-1 since we are removing the agent that heats */</span></div>
<div class="line"><a name="l00159"></a><span class="lineno"> 159</span>  <a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a9f73720f209b1536b1d32300b52a9845">xIonDense</a>[nelem][<a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a5408647e441ba1163482e2191bcccc80">IonLow</a>[nelem]+1] += </div>
<div class="line"><a name="l00160"></a><span class="lineno"> 160</span>  <a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a9f73720f209b1536b1d32300b52a9845">xIonDense</a>[nelem][<a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a5408647e441ba1163482e2191bcccc80">IonLow</a>[nelem]];</div>
<div class="line"><a name="l00161"></a><span class="lineno"> 161</span>  <a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a9f73720f209b1536b1d32300b52a9845">xIonDense</a>[nelem][<a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a5408647e441ba1163482e2191bcccc80">IonLow</a>[nelem]] = 0.;</div>
<div class="line"><a name="l00162"></a><span class="lineno"> 162</span>  <span class="comment">/* >>chng 01 aug 04, remove -1 which clobbers thermal.heating when IonLow == 0 */</span></div>
<div class="line"><a name="l00163"></a><span class="lineno"> 163</span>  <span class="comment">/*thermal.heating[nelem][dense.IonLow[nelem]-1] = 0.;*/</span></div>
<div class="line"><a name="l00164"></a><span class="lineno"> 164</span>  <a class="code" href="thermal_8cpp.html#aa9fb6393d963cd8537ddeb8735d4eb6a">thermal</a>.<a class="code" href="structt__thermal.html#a199cd035e80c49312e6681be3e5362c5">heating</a>[nelem][<a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a5408647e441ba1163482e2191bcccc80">IonLow</a>[nelem]] = 0.;</div>
<div class="line"><a name="l00165"></a><span class="lineno"> 165</span>  <span class="keywordflow">if</span>( <a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a5408647e441ba1163482e2191bcccc80">IonLow</a>[nelem] == nelem+1-<a class="code" href="cddefines_8h.html#a9386366f72568a2cb6ca627b91c6a63f">NISO</a> )</div>
<div class="line"><a name="l00166"></a><span class="lineno"> 166</span>  {</div>
<div class="line"><a name="l00167"></a><span class="lineno"> 167</span>  <span class="keywordtype">long</span> <span class="keywordtype">int</span> ipISO = nelem - <a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a5408647e441ba1163482e2191bcccc80">IonLow</a>[nelem];</div>
<div class="line"><a name="l00168"></a><span class="lineno"> 168</span>  <a class="code" href="cddefines_8h.html#a092bd7bb2cb7fd9f483b6995cee61bc0">ASSERT</a>( ipISO>=0 && ipISO<<a class="code" href="cddefines_8h.html#a9386366f72568a2cb6ca627b91c6a63f">NISO</a> );</div>
<div class="line"><a name="l00169"></a><span class="lineno"> 169</span>  <span class="keywordflow">for</span>( <span class="keywordtype">long</span> level = 0; level < <a class="code" href="iso_8cpp.html#ab57c2051ee65e0236231a59103b5e80c">iso_sp</a>[ipISO][nelem].<a class="code" href="classt__iso__sp.html#a19dcfe5bb72eddf5a23d02ed82bc1d00">numLevels_max</a>; level++ )</div>
<div class="line"><a name="l00170"></a><span class="lineno"> 170</span>  <a class="code" href="iso_8cpp.html#ab57c2051ee65e0236231a59103b5e80c">iso_sp</a>[ipISO][nelem].st[level].Pop() = 0.;</div>
<div class="line"><a name="l00171"></a><span class="lineno"> 171</span>  }</div>
<div class="line"><a name="l00172"></a><span class="lineno"> 172</span> </div>
<div class="line"><a name="l00173"></a><span class="lineno"> 173</span>  <span class="comment">/* increment low stage limit */</span></div>
<div class="line"><a name="l00174"></a><span class="lineno"> 174</span>  ++<a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a5408647e441ba1163482e2191bcccc80">IonLow</a>[nelem];</div>
<div class="line"><a name="l00175"></a><span class="lineno"> 175</span>  lgLo_Up = <span class="keyword">true</span>;</div>
<div class="line"><a name="l00176"></a><span class="lineno"> 176</span>  }</div>
<div class="line"><a name="l00177"></a><span class="lineno"> 177</span>  }</div>
<div class="line"><a name="l00178"></a><span class="lineno"> 178</span> </div>
<div class="line"><a name="l00179"></a><span class="lineno"> 179</span>  <span class="comment">/* sanity check */</span></div>
<div class="line"><a name="l00180"></a><span class="lineno"> 180</span>  <a class="code" href="cddefines_8h.html#a092bd7bb2cb7fd9f483b6995cee61bc0">ASSERT</a>( <a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a5408647e441ba1163482e2191bcccc80">IonLow</a>[nelem] <= <a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a54b5ad4bfa10e31c0d18511f31b54b54">IonHigh</a>[nelem] );</div>
<div class="line"><a name="l00181"></a><span class="lineno"> 181</span> </div>
<div class="line"><a name="l00182"></a><span class="lineno"> 182</span>  <span class="comment">/* this checks on error condition where the gas is stupendously highly ionized,</span></div>
<div class="line"><a name="l00183"></a><span class="lineno"> 183</span> <span class="comment"> * the low limit is already one less than high, and we need to raise the low</span></div>
<div class="line"><a name="l00184"></a><span class="lineno"> 184</span> <span class="comment"> * limit further */</span></div>
<div class="line"><a name="l00185"></a><span class="lineno"> 185</span>  <span class="keywordflow">if</span>( <a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a54b5ad4bfa10e31c0d18511f31b54b54">IonHigh</a>[nelem] > 1 &&</div>
<div class="line"><a name="l00186"></a><span class="lineno"> 186</span>  (<a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a5408647e441ba1163482e2191bcccc80">IonLow</a>[nelem]==<a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a54b5ad4bfa10e31c0d18511f31b54b54">IonHigh</a>[nelem]-1) &&</div>
<div class="line"><a name="l00187"></a><span class="lineno"> 187</span>  (<a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a9f73720f209b1536b1d32300b52a9845">xIonDense</a>[nelem][<a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a5408647e441ba1163482e2191bcccc80">IonLow</a>[nelem]] < <a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a18996563f56d945b7b432d79674b2f28">density_low_limit</a>) )</div>
<div class="line"><a name="l00188"></a><span class="lineno"> 188</span>  {</div>
<div class="line"><a name="l00189"></a><span class="lineno"> 189</span> <span class="preprocessor"># if 0</span></div>
<div class="line"><a name="l00190"></a><span class="lineno"> 190</span> <span class="preprocessor"></span> fprintf(<a class="code" href="cddefines_8cpp.html#a94bc49f6569c17375ac7fbf6a66f6dd0">ioQQQ</a>,</div>
<div class="line"><a name="l00191"></a><span class="lineno"> 191</span>  <span class="stringliteral">"PROBLEM DISASTER the density of ion %li of element %s is too small to be computed on this cpu.\n"</span>,</div>
<div class="line"><a name="l00192"></a><span class="lineno"> 192</span>  <a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a5408647e441ba1163482e2191bcccc80">IonLow</a>[nelem]+1,</div>
<div class="line"><a name="l00193"></a><span class="lineno"> 193</span>  <a class="code" href="elementnames_8cpp.html#ac0f7ebd5007005ba0c1a59e88517829e">elementnames</a>.<a class="code" href="structt__elementnames.html#af862e7af6aac5ce21ade0a6c85289c38">chElementName</a>[nelem]);</div>
<div class="line"><a name="l00194"></a><span class="lineno"> 194</span>  fprintf(<a class="code" href="cddefines_8cpp.html#a94bc49f6569c17375ac7fbf6a66f6dd0">ioQQQ</a>,</div>
<div class="line"><a name="l00195"></a><span class="lineno"> 195</span>  <span class="stringliteral">"Turn off the element with the command ELEMENT XXX OFF or do not consider "</span></div>
<div class="line"><a name="l00196"></a><span class="lineno"> 196</span>  <span class="stringliteral">"gas with low density, the current hydrogen density is %.2e cm-3.\n"</span>,</div>
<div class="line"><a name="l00197"></a><span class="lineno"> 197</span>  <a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#ac3103e7dcf065b405339072b2c833328">gas_phase</a>[<a class="code" href="cddefines_8h.html#ad230dc2b848c4445597e35b10e37bb74">ipHYDROGEN</a>]);</div>
<div class="line"><a name="l00198"></a><span class="lineno"> 198</span>  fprintf(<a class="code" href="cddefines_8cpp.html#a94bc49f6569c17375ac7fbf6a66f6dd0">ioQQQ</a>,</div>
<div class="line"><a name="l00199"></a><span class="lineno"> 199</span>  <span class="stringliteral">"The outer radius of the cloud is %.2e cm - should a stopping "</span></div>
<div class="line"><a name="l00200"></a><span class="lineno"> 200</span>  <span class="stringliteral">"radius be set?\n"</span>,</div>
<div class="line"><a name="l00201"></a><span class="lineno"> 201</span>  <a class="code" href="radius_8cpp.html#ad57f06f64461f4325506113ba07f29fa">radius</a>.<a class="code" href="structt__radius.html#af333bba77be0c400d735bf3fb0ce5f52">Radius</a> );</div>
<div class="line"><a name="l00202"></a><span class="lineno"> 202</span>  fprintf(<a class="code" href="cddefines_8cpp.html#a94bc49f6569c17375ac7fbf6a66f6dd0">ioQQQ</a>,</div>
<div class="line"><a name="l00203"></a><span class="lineno"> 203</span>  <span class="stringliteral">"The abort flag is being set - the calculation is stopping.\n"</span>);</div>
<div class="line"><a name="l00204"></a><span class="lineno"> 204</span> <span class="preprocessor"># endif</span></div>
<div class="line"><a name="l00205"></a><span class="lineno"> 205</span> <span class="preprocessor"></span> <span class="comment">//lgAbort = true;</span></div>
<div class="line"><a name="l00206"></a><span class="lineno"> 206</span>  <a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a9f73720f209b1536b1d32300b52a9845">xIonDense</a>[nelem][<a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a5408647e441ba1163482e2191bcccc80">IonLow</a>[nelem]] = (<a class="code" href="cddefines_8h.html#a9aeda5ccf905f7d5241c0fe35434c820">realnum</a>)<a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a18996563f56d945b7b432d79674b2f28">density_low_limit</a>;</div>
<div class="line"><a name="l00207"></a><span class="lineno"> 207</span>  <span class="keywordflow">return</span>;</div>
<div class="line"><a name="l00208"></a><span class="lineno"> 208</span>  }</div>
<div class="line"><a name="l00209"></a><span class="lineno"> 209</span> </div>
<div class="line"><a name="l00210"></a><span class="lineno"> 210</span>  <span class="comment">/* trim down high stages that have too small an abundance */</span></div>
<div class="line"><a name="l00211"></a><span class="lineno"> 211</span>  <span class="keywordflow">if</span>( </div>
<div class="line"><a name="l00212"></a><span class="lineno"> 212</span>  <a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a54b5ad4bfa10e31c0d18511f31b54b54">IonHigh</a>[nelem] > <a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a5408647e441ba1163482e2191bcccc80">IonLow</a>[nelem] && </div>
<div class="line"><a name="l00213"></a><span class="lineno"> 213</span>  ( (<a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a9f73720f209b1536b1d32300b52a9845">xIonDense</a>[nelem][<a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a54b5ad4bfa10e31c0d18511f31b54b54">IonHigh</a>[nelem]]/<a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#ac3103e7dcf065b405339072b2c833328">gas_phase</a>[nelem] <= </div>
<div class="line"><a name="l00214"></a><span class="lineno"> 214</span>  trimhi ) ||</div>
<div class="line"><a name="l00215"></a><span class="lineno"> 215</span>  (<a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a9f73720f209b1536b1d32300b52a9845">xIonDense</a>[nelem][<a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a54b5ad4bfa10e31c0d18511f31b54b54">IonHigh</a>[nelem]] <= <a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a18996563f56d945b7b432d79674b2f28">density_low_limit</a> ) )</div>
<div class="line"><a name="l00216"></a><span class="lineno"> 216</span>  ) </div>
<div class="line"><a name="l00217"></a><span class="lineno"> 217</span>  {</div>
<div class="line"><a name="l00218"></a><span class="lineno"> 218</span>  <span class="comment">/* >>chng 03 sep 30, the atom and its first ion are a special case</span></div>
<div class="line"><a name="l00219"></a><span class="lineno"> 219</span> <span class="comment"> * since we want to compute even trivial ions in molecular clouds */</span></div>
<div class="line"><a name="l00220"></a><span class="lineno"> 220</span>  <span class="keywordflow">if</span>( <a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a54b5ad4bfa10e31c0d18511f31b54b54">IonHigh</a>[nelem]>1 ||</div>
<div class="line"><a name="l00221"></a><span class="lineno"> 221</span>  (<a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a54b5ad4bfa10e31c0d18511f31b54b54">IonHigh</a>[nelem]==1&&<a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a9f73720f209b1536b1d32300b52a9845">xIonDense</a>[nelem][1]<100.*<a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a18996563f56d945b7b432d79674b2f28">density_low_limit</a>) )</div>
<div class="line"><a name="l00222"></a><span class="lineno"> 222</span>  {</div>
<div class="line"><a name="l00223"></a><span class="lineno"> 223</span>  <a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a9f73720f209b1536b1d32300b52a9845">xIonDense</a>[nelem][<a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a54b5ad4bfa10e31c0d18511f31b54b54">IonHigh</a>[nelem]-1] += </div>
<div class="line"><a name="l00224"></a><span class="lineno"> 224</span>  <a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a9f73720f209b1536b1d32300b52a9845">xIonDense</a>[nelem][<a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a54b5ad4bfa10e31c0d18511f31b54b54">IonHigh</a>[nelem]];</div>
<div class="line"><a name="l00225"></a><span class="lineno"> 225</span>  <a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a9f73720f209b1536b1d32300b52a9845">xIonDense</a>[nelem][<a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a54b5ad4bfa10e31c0d18511f31b54b54">IonHigh</a>[nelem]] = 0.;</div>
<div class="line"><a name="l00226"></a><span class="lineno"> 226</span>  <a class="code" href="thermal_8cpp.html#aa9fb6393d963cd8537ddeb8735d4eb6a">thermal</a>.<a class="code" href="structt__thermal.html#a199cd035e80c49312e6681be3e5362c5">heating</a>[nelem][<a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a54b5ad4bfa10e31c0d18511f31b54b54">IonHigh</a>[nelem]-1] = 0.;</div>
<div class="line"><a name="l00227"></a><span class="lineno"> 227</span>  <span class="keywordflow">if</span>( <a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a54b5ad4bfa10e31c0d18511f31b54b54">IonHigh</a>[nelem] == nelem+1-<a class="code" href="cddefines_8h.html#a9386366f72568a2cb6ca627b91c6a63f">NISO</a> )</div>
<div class="line"><a name="l00228"></a><span class="lineno"> 228</span>  {</div>
<div class="line"><a name="l00229"></a><span class="lineno"> 229</span>  <span class="keywordtype">long</span> <span class="keywordtype">int</span> ipISO = nelem - <a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a54b5ad4bfa10e31c0d18511f31b54b54">IonHigh</a>[nelem];</div>
<div class="line"><a name="l00230"></a><span class="lineno"> 230</span>  <a class="code" href="cddefines_8h.html#a092bd7bb2cb7fd9f483b6995cee61bc0">ASSERT</a>( ipISO>=0 && ipISO<<a class="code" href="cddefines_8h.html#a9386366f72568a2cb6ca627b91c6a63f">NISO</a> );</div>
<div class="line"><a name="l00231"></a><span class="lineno"> 231</span>  <span class="keywordflow">for</span>( <span class="keywordtype">long</span> level = 0; level < <a class="code" href="iso_8cpp.html#ab57c2051ee65e0236231a59103b5e80c">iso_sp</a>[ipISO][nelem].<a class="code" href="classt__iso__sp.html#a19dcfe5bb72eddf5a23d02ed82bc1d00">numLevels_max</a>; level++ )</div>
<div class="line"><a name="l00232"></a><span class="lineno"> 232</span>  <a class="code" href="iso_8cpp.html#ab57c2051ee65e0236231a59103b5e80c">iso_sp</a>[ipISO][nelem].st[level].Pop() = 0.;</div>
<div class="line"><a name="l00233"></a><span class="lineno"> 233</span>  }</div>
<div class="line"><a name="l00234"></a><span class="lineno"> 234</span>  --<a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a54b5ad4bfa10e31c0d18511f31b54b54">IonHigh</a>[nelem];</div>
<div class="line"><a name="l00235"></a><span class="lineno"> 235</span>  lgHi_Down = <span class="keyword">true</span>;</div>
<div class="line"><a name="l00236"></a><span class="lineno"> 236</span>  }</div>
<div class="line"><a name="l00237"></a><span class="lineno"> 237</span>  }</div>
<div class="line"><a name="l00238"></a><span class="lineno"> 238</span> </div>
<div class="line"><a name="l00239"></a><span class="lineno"> 239</span>  <span class="comment">/* trim up highest stages - will this be done? */</span></div>
<div class="line"><a name="l00240"></a><span class="lineno"> 240</span>  lgHi_Up_enable = <span class="keyword">true</span>;</div>
<div class="line"><a name="l00241"></a><span class="lineno"> 241</span>  <span class="comment">/* trimming can be turned off */</span></div>
<div class="line"><a name="l00242"></a><span class="lineno"> 242</span>  <span class="keywordflow">if</span>( !<a class="code" href="ionbal_8cpp.html#a360ea90b4c4f87f220b366907da0a2be">ionbal</a>.<a class="code" href="classt__ionbal.html#a3e5ca6ac97772453778df5df249ea83b">lgTrimhiOn</a> )</div>
<div class="line"><a name="l00243"></a><span class="lineno"> 243</span>  lgHi_Up_enable = <span class="keyword">false</span>;</div>
<div class="line"><a name="l00244"></a><span class="lineno"> 244</span>  <span class="comment">/* high stage is already fully stripped */</span></div>
<div class="line"><a name="l00245"></a><span class="lineno"> 245</span>  <span class="keywordflow">if</span>( <a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a54b5ad4bfa10e31c0d18511f31b54b54">IonHigh</a>[nelem]>=nelem+1 )</div>
<div class="line"><a name="l00246"></a><span class="lineno"> 246</span>  lgHi_Up_enable = <span class="keyword">false</span>;</div>
<div class="line"><a name="l00247"></a><span class="lineno"> 247</span>  <span class="comment">/* we have previously trimmed this stage down */</span></div>
<div class="line"><a name="l00248"></a><span class="lineno"> 248</span>  <span class="keywordflow">if</span>( lgHi_Down )</div>
<div class="line"><a name="l00249"></a><span class="lineno"> 249</span>  lgHi_Up_enable = <span class="keyword">false</span>;</div>
<div class="line"><a name="l00250"></a><span class="lineno"> 250</span>  <span class="comment">/* we are in neutral gas */</span></div>
<div class="line"><a name="l00251"></a><span class="lineno"> 251</span>  <span class="keywordflow">if</span>( <a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a9f73720f209b1536b1d32300b52a9845">xIonDense</a>[<a class="code" href="cddefines_8h.html#ad230dc2b848c4445597e35b10e37bb74">ipHYDROGEN</a>][1]/<a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#ac3103e7dcf065b405339072b2c833328">gas_phase</a>[<a class="code" href="cddefines_8h.html#ad230dc2b848c4445597e35b10e37bb74">ipHYDROGEN</a>]<0.9 )</div>
<div class="line"><a name="l00252"></a><span class="lineno"> 252</span>  lgHi_Up_enable = <span class="keyword">false</span>;</div>
<div class="line"><a name="l00253"></a><span class="lineno"> 253</span> </div>
<div class="line"><a name="l00254"></a><span class="lineno"> 254</span>  <span class="keywordflow">if</span>( lgHi_Up_enable )</div>
<div class="line"><a name="l00255"></a><span class="lineno"> 255</span>  {</div>
<div class="line"><a name="l00256"></a><span class="lineno"> 256</span>  <a class="code" href="cddefines_8h.html#a9aeda5ccf905f7d5241c0fe35434c820">realnum</a> abundold = 0;</div>
<div class="line"><a name="l00257"></a><span class="lineno"> 257</span>  <span class="keywordflow">if</span>( <a class="code" href="cddefines_8cpp.html#a138c2d35a9db547dc6017c3ab69d3989">nzone</a>>2 ) </div>
<div class="line"><a name="l00258"></a><span class="lineno"> 258</span>  abundold = <a class="code" href="struc_8cpp.html#a192d1cf4701ae3d1cac1d72eff901717">struc</a>.<a class="code" href="structt__struc.html#a2a12044b0769eb3aafa311879e554883">xIonDense</a>[nelem][<a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a54b5ad4bfa10e31c0d18511f31b54b54">IonHigh</a>[nelem]][<a class="code" href="cddefines_8cpp.html#a138c2d35a9db547dc6017c3ab69d3989">nzone</a>-3]/</div>
<div class="line"><a name="l00259"></a><span class="lineno"> 259</span>  <a class="code" href="cddefines_8h.html#ad1fdf827e851b9f69048a3ded076569b">SDIV</a>( <a class="code" href="struc_8cpp.html#a192d1cf4701ae3d1cac1d72eff901717">struc</a>.<a class="code" href="structt__struc.html#a964afea1dad9b843c3e23c30744d080a">gas_phase</a>[nelem][<a class="code" href="cddefines_8cpp.html#a138c2d35a9db547dc6017c3ab69d3989">nzone</a>-3]);</div>
<div class="line"><a name="l00260"></a><span class="lineno"> 260</span>  <a class="code" href="cddefines_8h.html#a9aeda5ccf905f7d5241c0fe35434c820">realnum</a> abundnew = <a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a9f73720f209b1536b1d32300b52a9845">xIonDense</a>[nelem][<a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a54b5ad4bfa10e31c0d18511f31b54b54">IonHigh</a>[nelem]]/<a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#ac3103e7dcf065b405339072b2c833328">gas_phase</a>[nelem];</div>
<div class="line"><a name="l00261"></a><span class="lineno"> 261</span>  <span class="comment">/* only raise highest stage if ionization potential of next highest stage is within</span></div>
<div class="line"><a name="l00262"></a><span class="lineno"> 262</span> <span class="comment"> * continuum array and the abundance of the highest stage is significant */</span></div>
<div class="line"><a name="l00263"></a><span class="lineno"> 263</span>  <span class="keywordflow">if</span>( (<a class="code" href="heavy_8cpp.html#a0d3471b36699083d7f5363716ef19522">Heavy</a>.<a class="code" href="structt___heavy.html#ae16a715e3f303c32d21c5f74c0da3744">Valence_IP_Ryd</a>[nelem][<a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a54b5ad4bfa10e31c0d18511f31b54b54">IonHigh</a>[nelem]] < <a class="code" href="rfield_8cpp.html#ae577590833d90679b27a7e2b237ee667">rfield</a>.<a class="code" href="structt__rfield.html#ab80ba75cc614c2e11602c627ccb068a5">anu</a>[<a class="code" href="rfield_8cpp.html#ae577590833d90679b27a7e2b237ee667">rfield</a>.<a class="code" href="structt__rfield.html#aa61dca00b142fadf1b2013c670c6184c">nflux</a>-1] ||</div>
<div class="line"><a name="l00264"></a><span class="lineno"> 264</span>  <a class="code" href="heavy_8cpp.html#a0d3471b36699083d7f5363716ef19522">Heavy</a>.<a class="code" href="structt___heavy.html#ae16a715e3f303c32d21c5f74c0da3744">Valence_IP_Ryd</a>[nelem][<a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a54b5ad4bfa10e31c0d18511f31b54b54">IonHigh</a>[nelem]] < <a class="code" href="phycon_8cpp.html#a58e7356b28193ac2b0ee8b08f06939ba">phycon</a>.<a class="code" href="structt__phycon.html#a9635f69826bc216fb4a6899785925c3a">te_ryd</a>*10.) &&</div>
<div class="line"><a name="l00265"></a><span class="lineno"> 265</span>  <a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a9f73720f209b1536b1d32300b52a9845">xIonDense</a>[nelem][<a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a54b5ad4bfa10e31c0d18511f31b54b54">IonHigh</a>[nelem]]/<a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#ac3103e7dcf065b405339072b2c833328">gas_phase</a>[nelem] > 1e-4f &&</div>
<div class="line"><a name="l00266"></a><span class="lineno"> 266</span>  <span class="comment">/* this checks that abundance of highest stage is increasing */</span></div>
<div class="line"><a name="l00267"></a><span class="lineno"> 267</span>  abundnew > abundold*1.01 )</div>
<div class="line"><a name="l00268"></a><span class="lineno"> 268</span>  {</div>
<div class="line"><a name="l00269"></a><span class="lineno"> 269</span>  <span class="comment">/*fprintf(ioQQQ,"uuppp %li %li \n", nelem, dense.IonHigh[nelem] );*/</span></div>
<div class="line"><a name="l00270"></a><span class="lineno"> 270</span>  <span class="comment">/* raise highest level of ionization */</span></div>
<div class="line"><a name="l00271"></a><span class="lineno"> 271</span>  ++<a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a54b5ad4bfa10e31c0d18511f31b54b54">IonHigh</a>[nelem];</div>
<div class="line"><a name="l00272"></a><span class="lineno"> 272</span>  lgHi_Up = <span class="keyword">true</span>;</div>
<div class="line"><a name="l00273"></a><span class="lineno"> 273</span>  <span class="comment">/* set abundance to almost zero so that sanity check elsewhere will be ok */</span></div>
<div class="line"><a name="l00274"></a><span class="lineno"> 274</span>  <a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a9f73720f209b1536b1d32300b52a9845">xIonDense</a>[nelem][<a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a54b5ad4bfa10e31c0d18511f31b54b54">IonHigh</a>[nelem]] = (<a class="code" href="cddefines_8h.html#a9aeda5ccf905f7d5241c0fe35434c820">realnum</a>)(<a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a18996563f56d945b7b432d79674b2f28">density_low_limit</a>*10.);</div>
<div class="line"><a name="l00275"></a><span class="lineno"> 275</span>  <a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a9f73720f209b1536b1d32300b52a9845">xIonDense</a>[nelem][<a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a54b5ad4bfa10e31c0d18511f31b54b54">IonHigh</a>[nelem]-1] -= </div>
<div class="line"><a name="l00276"></a><span class="lineno"> 276</span>  <a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a9f73720f209b1536b1d32300b52a9845">xIonDense</a>[nelem][<a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a54b5ad4bfa10e31c0d18511f31b54b54">IonHigh</a>[nelem]];</div>
<div class="line"><a name="l00277"></a><span class="lineno"> 277</span>  <span class="keywordtype">long</span> <span class="keywordtype">int</span> ipISO = nelem - <a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a54b5ad4bfa10e31c0d18511f31b54b54">IonHigh</a>[nelem];</div>
<div class="line"><a name="l00278"></a><span class="lineno"> 278</span>  <span class="keywordflow">if</span> (ipISO >= 0 && ipISO < <a class="code" href="cddefines_8h.html#a9386366f72568a2cb6ca627b91c6a63f">NISO</a>)</div>
<div class="line"><a name="l00279"></a><span class="lineno"> 279</span>  <a class="code" href="iso_8cpp.html#ab57c2051ee65e0236231a59103b5e80c">iso_sp</a>[ipISO][nelem].<a class="code" href="classt__iso__sp.html#abed262ca9c3408aadb4a4e3e0c902172">st</a>[0].Pop() = <a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a9f73720f209b1536b1d32300b52a9845">xIonDense</a>[nelem][<a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a54b5ad4bfa10e31c0d18511f31b54b54">IonHigh</a>[nelem]];</div>
<div class="line"><a name="l00280"></a><span class="lineno"> 280</span>  }</div>
<div class="line"><a name="l00281"></a><span class="lineno"> 281</span>  }</div>
<div class="line"><a name="l00282"></a><span class="lineno"> 282</span> </div>
<div class="line"><a name="l00283"></a><span class="lineno"> 283</span>  <span class="comment">/* sanity check */</span></div>
<div class="line"><a name="l00284"></a><span class="lineno"> 284</span>  <a class="code" href="cddefines_8h.html#a092bd7bb2cb7fd9f483b6995cee61bc0">ASSERT</a>( <a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a5408647e441ba1163482e2191bcccc80">IonLow</a>[nelem] <= <a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a54b5ad4bfa10e31c0d18511f31b54b54">IonHigh</a>[nelem] );</div>
<div class="line"><a name="l00285"></a><span class="lineno"> 285</span> </div>
<div class="line"><a name="l00286"></a><span class="lineno"> 286</span>  <span class="comment">/* lower lowest stage of ionization if we have significant abundance at current lowest */</span></div>
<div class="line"><a name="l00287"></a><span class="lineno"> 287</span>  <span class="keywordflow">if</span>( <a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a9f73720f209b1536b1d32300b52a9845">xIonDense</a>[nelem][<a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a5408647e441ba1163482e2191bcccc80">IonLow</a>[nelem]]/<a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#ac3103e7dcf065b405339072b2c833328">gas_phase</a>[nelem] > 1e-3f && </div>
<div class="line"><a name="l00288"></a><span class="lineno"> 288</span>  <a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a5408647e441ba1163482e2191bcccc80">IonLow</a>[nelem] > 0 )</div>
<div class="line"><a name="l00289"></a><span class="lineno"> 289</span>  {</div>
<div class="line"><a name="l00290"></a><span class="lineno"> 290</span>  <span class="comment">/* lower lowest level of ionization */</span></div>
<div class="line"><a name="l00291"></a><span class="lineno"> 291</span>  --<a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a5408647e441ba1163482e2191bcccc80">IonLow</a>[nelem];</div>
<div class="line"><a name="l00292"></a><span class="lineno"> 292</span>  lgLo_Down = <span class="keyword">true</span>;</div>
<div class="line"><a name="l00293"></a><span class="lineno"> 293</span>  <span class="comment">/* >>chng 01 aug 02, set this to zero so that sanity check elsewhere will be ok */</span></div>
<div class="line"><a name="l00294"></a><span class="lineno"> 294</span>  <a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a9f73720f209b1536b1d32300b52a9845">xIonDense</a>[nelem][<a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a5408647e441ba1163482e2191bcccc80">IonLow</a>[nelem]] = (<a class="code" href="cddefines_8h.html#a9aeda5ccf905f7d5241c0fe35434c820">realnum</a>)<a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a18996563f56d945b7b432d79674b2f28">density_low_limit</a>;</div>
<div class="line"><a name="l00295"></a><span class="lineno"> 295</span>  <a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a9f73720f209b1536b1d32300b52a9845">xIonDense</a>[nelem][<a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a5408647e441ba1163482e2191bcccc80">IonLow</a>[nelem]+1] -= </div>
<div class="line"><a name="l00296"></a><span class="lineno"> 296</span>  <a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a9f73720f209b1536b1d32300b52a9845">xIonDense</a>[nelem][<a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a5408647e441ba1163482e2191bcccc80">IonLow</a>[nelem]];</div>
<div class="line"><a name="l00297"></a><span class="lineno"> 297</span>  <span class="keywordtype">long</span> <span class="keywordtype">int</span> ipISO = nelem - <a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a5408647e441ba1163482e2191bcccc80">IonLow</a>[nelem];</div>
<div class="line"><a name="l00298"></a><span class="lineno"> 298</span>  if (ipISO >= 0 && ipISO < <a class="code" href="cddefines_8h.html#a9386366f72568a2cb6ca627b91c6a63f">NISO</a>)</div>
<div class="line"><a name="l00299"></a><span class="lineno"> 299</span>  <a class="code" href="iso_8cpp.html#ab57c2051ee65e0236231a59103b5e80c">iso_sp</a>[ipISO][nelem].<a class="code" href="classt__iso__sp.html#abed262ca9c3408aadb4a4e3e0c902172">st</a>[0].Pop() = <a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a9f73720f209b1536b1d32300b52a9845">xIonDense</a>[nelem][<a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a5408647e441ba1163482e2191bcccc80">IonLow</a>[nelem]];</div>
<div class="line"><a name="l00300"></a><span class="lineno"> 300</span>  }</div>
<div class="line"><a name="l00301"></a><span class="lineno"> 301</span> </div>
<div class="line"><a name="l00302"></a><span class="lineno"> 302</span>  <span class="comment">/* raise lowest stage of ionization, but only if we are near illuminated face of cloud*/</span></div>
<div class="line"><a name="l00303"></a><span class="lineno"> 303</span>  <span class="keywordflow">else</span> <span class="keywordflow">if</span>( <a class="code" href="cddefines_8cpp.html#a138c2d35a9db547dc6017c3ab69d3989">nzone</a> < 10 &&</div>
<div class="line"><a name="l00304"></a><span class="lineno"> 304</span>  (<a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a9f73720f209b1536b1d32300b52a9845">xIonDense</a>[nelem][<a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a5408647e441ba1163482e2191bcccc80">IonLow</a>[nelem]]/<a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#ac3103e7dcf065b405339072b2c833328">gas_phase</a>[nelem] <= (<a class="code" href="cddefines_8h.html#a9aeda5ccf905f7d5241c0fe35434c820">realnum</a>)trimlo) && </div>
<div class="line"><a name="l00305"></a><span class="lineno"> 305</span>  (<a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a5408647e441ba1163482e2191bcccc80">IonLow</a>[nelem] < (<a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a54b5ad4bfa10e31c0d18511f31b54b54">IonHigh</a>[nelem] - 2) ) )</div>
<div class="line"><a name="l00306"></a><span class="lineno"> 306</span>  {</div>
<div class="line"><a name="l00307"></a><span class="lineno"> 307</span>  <span class="comment">/* raise lowest level of ionization */</span></div>
<div class="line"><a name="l00308"></a><span class="lineno"> 308</span>  <a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a9f73720f209b1536b1d32300b52a9845">xIonDense</a>[nelem][<a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a5408647e441ba1163482e2191bcccc80">IonLow</a>[nelem]+1] += </div>
<div class="line"><a name="l00309"></a><span class="lineno"> 309</span>  <a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a9f73720f209b1536b1d32300b52a9845">xIonDense</a>[nelem][<a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a5408647e441ba1163482e2191bcccc80">IonLow</a>[nelem]];</div>
<div class="line"><a name="l00310"></a><span class="lineno"> 310</span>  <a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a9f73720f209b1536b1d32300b52a9845">xIonDense</a>[nelem][<a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a5408647e441ba1163482e2191bcccc80">IonLow</a>[nelem]] = 0.;</div>
<div class="line"><a name="l00311"></a><span class="lineno"> 311</span>  <span class="comment">/* no minus one in below since this is low bound, already bounds at atom */</span></div>
<div class="line"><a name="l00312"></a><span class="lineno"> 312</span>  <a class="code" href="thermal_8cpp.html#aa9fb6393d963cd8537ddeb8735d4eb6a">thermal</a>.<a class="code" href="structt__thermal.html#a199cd035e80c49312e6681be3e5362c5">heating</a>[nelem][<a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a5408647e441ba1163482e2191bcccc80">IonLow</a>[nelem]] = 0.;</div>
<div class="line"><a name="l00313"></a><span class="lineno"> 313</span>  <span class="keywordflow">if</span>( <a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a5408647e441ba1163482e2191bcccc80">IonLow</a>[nelem] == nelem+1-<a class="code" href="cddefines_8h.html#a9386366f72568a2cb6ca627b91c6a63f">NISO</a> )</div>
<div class="line"><a name="l00314"></a><span class="lineno"> 314</span>  {</div>
<div class="line"><a name="l00315"></a><span class="lineno"> 315</span>  <span class="keywordtype">long</span> <span class="keywordtype">int</span> ipISO = nelem - <a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a5408647e441ba1163482e2191bcccc80">IonLow</a>[nelem];</div>
<div class="line"><a name="l00316"></a><span class="lineno"> 316</span>  <a class="code" href="cddefines_8h.html#a092bd7bb2cb7fd9f483b6995cee61bc0">ASSERT</a>( ipISO>=0 && ipISO<<a class="code" href="cddefines_8h.html#a9386366f72568a2cb6ca627b91c6a63f">NISO</a> );</div>
<div class="line"><a name="l00317"></a><span class="lineno"> 317</span>  <span class="keywordflow">for</span>( <span class="keywordtype">long</span> level = 0; level < <a class="code" href="iso_8cpp.html#ab57c2051ee65e0236231a59103b5e80c">iso_sp</a>[ipISO][nelem].<a class="code" href="classt__iso__sp.html#a19dcfe5bb72eddf5a23d02ed82bc1d00">numLevels_max</a>; level++ )</div>
<div class="line"><a name="l00318"></a><span class="lineno"> 318</span>  <a class="code" href="iso_8cpp.html#ab57c2051ee65e0236231a59103b5e80c">iso_sp</a>[ipISO][nelem].st[level].Pop() = 0.;</div>
<div class="line"><a name="l00319"></a><span class="lineno"> 319</span>  }</div>
<div class="line"><a name="l00320"></a><span class="lineno"> 320</span>  ++<a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a5408647e441ba1163482e2191bcccc80">IonLow</a>[nelem];</div>
<div class="line"><a name="l00321"></a><span class="lineno"> 321</span>  lgLo_Up = <span class="keyword">true</span>;</div>
<div class="line"><a name="l00322"></a><span class="lineno"> 322</span>  }</div>
<div class="line"><a name="l00323"></a><span class="lineno"> 323</span>  <span class="comment">/* test on zero */</span></div>
<div class="line"><a name="l00324"></a><span class="lineno"> 324</span>  <span class="keywordflow">else</span> <span class="keywordflow">if</span>( (<a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a9f73720f209b1536b1d32300b52a9845">xIonDense</a>[nelem][<a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a5408647e441ba1163482e2191bcccc80">IonLow</a>[nelem]] < <a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a18996563f56d945b7b432d79674b2f28">density_low_limit</a>) && </div>
<div class="line"><a name="l00325"></a><span class="lineno"> 325</span>  <span class="comment">/*>>chng 06 may 24, from IonLow < IonHigh to <IonHigh-1 because</span></div>
<div class="line"><a name="l00326"></a><span class="lineno"> 326</span> <span class="comment"> * old test would allow low to be raised too high, which then</span></div>
<div class="line"><a name="l00327"></a><span class="lineno"> 327</span> <span class="comment"> * leads to insanity */</span></div>
<div class="line"><a name="l00328"></a><span class="lineno"> 328</span>  (<a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a5408647e441ba1163482e2191bcccc80">IonLow</a>[nelem] < <a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a54b5ad4bfa10e31c0d18511f31b54b54">IonHigh</a>[nelem]-1) )</div>
<div class="line"><a name="l00329"></a><span class="lineno"> 329</span>  {</div>
<div class="line"><a name="l00330"></a><span class="lineno"> 330</span>  <span class="keywordflow">while</span>(<a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a9f73720f209b1536b1d32300b52a9845">xIonDense</a>[nelem][<a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a5408647e441ba1163482e2191bcccc80">IonLow</a>[nelem]] < <a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a18996563f56d945b7b432d79674b2f28">density_low_limit</a> && </div>
<div class="line"><a name="l00331"></a><span class="lineno"> 331</span>  <span class="comment">/* >>chng 07 feb 27 from < IonHigh to < IonHigh-1 to prevent raising</span></div>
<div class="line"><a name="l00332"></a><span class="lineno"> 332</span> <span class="comment"> * low to high */</span></div>
<div class="line"><a name="l00333"></a><span class="lineno"> 333</span>  (<a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a5408647e441ba1163482e2191bcccc80">IonLow</a>[nelem] < <a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a54b5ad4bfa10e31c0d18511f31b54b54">IonHigh</a>[nelem]-1) )</div>
<div class="line"><a name="l00334"></a><span class="lineno"> 334</span>  {</div>
<div class="line"><a name="l00335"></a><span class="lineno"> 335</span>  <span class="comment">/* raise lowest level of ionization */</span></div>
<div class="line"><a name="l00336"></a><span class="lineno"> 336</span>  <a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a9f73720f209b1536b1d32300b52a9845">xIonDense</a>[nelem][<a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a5408647e441ba1163482e2191bcccc80">IonLow</a>[nelem]+1] += </div>
<div class="line"><a name="l00337"></a><span class="lineno"> 337</span>  <a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a9f73720f209b1536b1d32300b52a9845">xIonDense</a>[nelem][<a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a5408647e441ba1163482e2191bcccc80">IonLow</a>[nelem]];</div>
<div class="line"><a name="l00338"></a><span class="lineno"> 338</span>  <a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a9f73720f209b1536b1d32300b52a9845">xIonDense</a>[nelem][<a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a5408647e441ba1163482e2191bcccc80">IonLow</a>[nelem]] = 0.;</div>
<div class="line"><a name="l00339"></a><span class="lineno"> 339</span>  <span class="comment">/* no minus one in below since this is low bound, already bounds at atom */</span></div>
<div class="line"><a name="l00340"></a><span class="lineno"> 340</span>  <a class="code" href="thermal_8cpp.html#aa9fb6393d963cd8537ddeb8735d4eb6a">thermal</a>.<a class="code" href="structt__thermal.html#a199cd035e80c49312e6681be3e5362c5">heating</a>[nelem][<a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a5408647e441ba1163482e2191bcccc80">IonLow</a>[nelem]] = 0.;</div>
<div class="line"><a name="l00341"></a><span class="lineno"> 341</span>  <span class="keywordflow">if</span>( <a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a5408647e441ba1163482e2191bcccc80">IonLow</a>[nelem] == nelem+1-<a class="code" href="cddefines_8h.html#a9386366f72568a2cb6ca627b91c6a63f">NISO</a> )</div>
<div class="line"><a name="l00342"></a><span class="lineno"> 342</span>  {</div>
<div class="line"><a name="l00343"></a><span class="lineno"> 343</span>  <span class="keywordtype">long</span> <span class="keywordtype">int</span> ipISO = nelem - <a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a5408647e441ba1163482e2191bcccc80">IonLow</a>[nelem];</div>
<div class="line"><a name="l00344"></a><span class="lineno"> 344</span>  <a class="code" href="cddefines_8h.html#a092bd7bb2cb7fd9f483b6995cee61bc0">ASSERT</a>( ipISO>=0 && ipISO<<a class="code" href="cddefines_8h.html#a9386366f72568a2cb6ca627b91c6a63f">NISO</a> );</div>
<div class="line"><a name="l00345"></a><span class="lineno"> 345</span>  <span class="keywordflow">for</span>( <span class="keywordtype">long</span> level = 0; level < <a class="code" href="iso_8cpp.html#ab57c2051ee65e0236231a59103b5e80c">iso_sp</a>[ipISO][nelem].<a class="code" href="classt__iso__sp.html#a19dcfe5bb72eddf5a23d02ed82bc1d00">numLevels_max</a>; level++ )</div>
<div class="line"><a name="l00346"></a><span class="lineno"> 346</span>  <a class="code" href="iso_8cpp.html#ab57c2051ee65e0236231a59103b5e80c">iso_sp</a>[ipISO][nelem].st[level].Pop() = 0.;</div>
<div class="line"><a name="l00347"></a><span class="lineno"> 347</span>  }</div>
<div class="line"><a name="l00348"></a><span class="lineno"> 348</span>  ++<a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a5408647e441ba1163482e2191bcccc80">IonLow</a>[nelem];</div>
<div class="line"><a name="l00349"></a><span class="lineno"> 349</span>  lgLo_Up = <span class="keyword">true</span>;</div>
<div class="line"><a name="l00350"></a><span class="lineno"> 350</span>  }</div>
<div class="line"><a name="l00351"></a><span class="lineno"> 351</span>  }</div>
<div class="line"><a name="l00352"></a><span class="lineno"> 352</span> </div>
<div class="line"><a name="l00353"></a><span class="lineno"> 353</span>  <span class="comment">/* sanity check */</span></div>
<div class="line"><a name="l00354"></a><span class="lineno"> 354</span>  <a class="code" href="cddefines_8h.html#a092bd7bb2cb7fd9f483b6995cee61bc0">ASSERT</a>( <a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a5408647e441ba1163482e2191bcccc80">IonLow</a>[nelem] <= <a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a54b5ad4bfa10e31c0d18511f31b54b54">IonHigh</a>[nelem] );</div>
<div class="line"><a name="l00355"></a><span class="lineno"> 355</span> </div>
<div class="line"><a name="l00356"></a><span class="lineno"> 356</span>  <span class="comment">/* these are standard bounds checks that appear throughout this routine</span></div>
<div class="line"><a name="l00357"></a><span class="lineno"> 357</span> <span class="comment"> * dense.xIonDense[IonLow] is first one with positive abundances</span></div>
<div class="line"><a name="l00358"></a><span class="lineno"> 358</span> <span class="comment"> * </span></div>
<div class="line"><a name="l00359"></a><span class="lineno"> 359</span> <span class="comment"> * in case where lower ionization stage was just lowered the abundance</span></div>
<div class="line"><a name="l00360"></a><span class="lineno"> 360</span> <span class="comment"> * was set to dense.density_low_limit so test must be < dense.density_low_limit */</span></div>
<div class="line"><a name="l00361"></a><span class="lineno"> 361</span>  <a class="code" href="cddefines_8h.html#a092bd7bb2cb7fd9f483b6995cee61bc0">ASSERT</a>( <a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a5408647e441ba1163482e2191bcccc80">IonLow</a>[nelem] <= 1 ||</div>
<div class="line"><a name="l00362"></a><span class="lineno"> 362</span>  <a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a9f73720f209b1536b1d32300b52a9845">xIonDense</a>[nelem][<a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a5408647e441ba1163482e2191bcccc80">IonLow</a>[nelem]-1] == 0. );</div>
<div class="line"><a name="l00363"></a><span class="lineno"> 363</span> </div>
<div class="line"><a name="l00364"></a><span class="lineno"> 364</span>  <a class="code" href="cddefines_8h.html#a092bd7bb2cb7fd9f483b6995cee61bc0">ASSERT</a>( (<a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a5408647e441ba1163482e2191bcccc80">IonLow</a>[nelem]==0 && <a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a54b5ad4bfa10e31c0d18511f31b54b54">IonHigh</a>[nelem]==0 ) || lgLo_Up ||</div>
<div class="line"><a name="l00365"></a><span class="lineno"> 365</span>  <a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a9f73720f209b1536b1d32300b52a9845">xIonDense</a>[nelem][<a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a5408647e441ba1163482e2191bcccc80">IonLow</a>[nelem]] >= <a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a18996563f56d945b7b432d79674b2f28">density_low_limit</a> ||</div>
<div class="line"><a name="l00366"></a><span class="lineno"> 366</span>  <a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a9f73720f209b1536b1d32300b52a9845">xIonDense</a>[nelem][<a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a5408647e441ba1163482e2191bcccc80">IonLow</a>[nelem]]/<a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#ac3103e7dcf065b405339072b2c833328">gas_phase</a>[nelem] >= <a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a18996563f56d945b7b432d79674b2f28">density_low_limit</a> ||</div>
<div class="line"><a name="l00367"></a><span class="lineno"> 367</span>  <span class="comment">/*>>chng 06 may 24, include this to cover case where cap is set by not allowing</span></div>
<div class="line"><a name="l00368"></a><span class="lineno"> 368</span> <span class="comment"> * lower limit to come up to upper limit */</span></div>
<div class="line"><a name="l00369"></a><span class="lineno"> 369</span>  (<a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a5408647e441ba1163482e2191bcccc80">IonLow</a>[nelem]==<a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a54b5ad4bfa10e31c0d18511f31b54b54">IonHigh</a>[nelem]-1 ));</div>
<div class="line"><a name="l00370"></a><span class="lineno"> 370</span> </div>
<div class="line"><a name="l00371"></a><span class="lineno"> 371</span>  {</div>
<div class="line"><a name="l00372"></a><span class="lineno"> 372</span>  <span class="comment">/* option to print out what has happened so far .... */</span></div>
<div class="line"><a name="l00373"></a><span class="lineno"> 373</span>  <span class="keyword">enum</span> {DEBUG_LOC=<span class="keyword">false</span>};</div>
<div class="line"><a name="l00374"></a><span class="lineno"> 374</span>  <span class="keywordflow">if</span>( DEBUG_LOC && nelem == <a class="code" href="cddefines_8h.html#a998e102b7d6537d3ef5200647c4b8559">ipHELIUM</a> )</div>
<div class="line"><a name="l00375"></a><span class="lineno"> 375</span>  {</div>
<div class="line"><a name="l00376"></a><span class="lineno"> 376</span>  <span class="keywordflow">if</span>( lgHi_Down ||lgHi_Up ||lgLo_Up ||lgLo_Down )</div>
<div class="line"><a name="l00377"></a><span class="lineno"> 377</span>  {</div>
<div class="line"><a name="l00378"></a><span class="lineno"> 378</span>  fprintf(<a class="code" href="cddefines_8cpp.html#a94bc49f6569c17375ac7fbf6a66f6dd0">ioQQQ</a>,<span class="stringliteral">"DEBUG TrimZone\t%li\t"</span>,<a class="code" href="cddefines_8cpp.html#a138c2d35a9db547dc6017c3ab69d3989">nzone</a> );</div>
<div class="line"><a name="l00379"></a><span class="lineno"> 379</span>  <span class="keywordflow">if</span>( lgHi_Down )</div>
<div class="line"><a name="l00380"></a><span class="lineno"> 380</span>  {</div>
<div class="line"><a name="l00381"></a><span class="lineno"> 381</span>  fprintf(<a class="code" href="cddefines_8cpp.html#a94bc49f6569c17375ac7fbf6a66f6dd0">ioQQQ</a>,<span class="stringliteral">"high dn %li to %li"</span>,</div>
<div class="line"><a name="l00382"></a><span class="lineno"> 382</span>  ion_hi_save , </div>
<div class="line"><a name="l00383"></a><span class="lineno"> 383</span>  <a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a54b5ad4bfa10e31c0d18511f31b54b54">IonHigh</a>[nelem] );</div>
<div class="line"><a name="l00384"></a><span class="lineno"> 384</span>  }</div>
<div class="line"><a name="l00385"></a><span class="lineno"> 385</span>  <span class="keywordflow">if</span>( lgHi_Up )</div>
<div class="line"><a name="l00386"></a><span class="lineno"> 386</span>  {</div>
<div class="line"><a name="l00387"></a><span class="lineno"> 387</span>  fprintf(<a class="code" href="cddefines_8cpp.html#a94bc49f6569c17375ac7fbf6a66f6dd0">ioQQQ</a>,<span class="stringliteral">"high up %li to %li"</span>,</div>
<div class="line"><a name="l00388"></a><span class="lineno"> 388</span>  ion_hi_save , </div>
<div class="line"><a name="l00389"></a><span class="lineno"> 389</span>  <a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a54b5ad4bfa10e31c0d18511f31b54b54">IonHigh</a>[nelem] );</div>
<div class="line"><a name="l00390"></a><span class="lineno"> 390</span>  }</div>
<div class="line"><a name="l00391"></a><span class="lineno"> 391</span>  <span class="keywordflow">if</span>( lgLo_Up )</div>
<div class="line"><a name="l00392"></a><span class="lineno"> 392</span>  {</div>
<div class="line"><a name="l00393"></a><span class="lineno"> 393</span>  fprintf(<a class="code" href="cddefines_8cpp.html#a94bc49f6569c17375ac7fbf6a66f6dd0">ioQQQ</a>,<span class="stringliteral">"low up %li to %li"</span>,</div>
<div class="line"><a name="l00394"></a><span class="lineno"> 394</span>  ion_lo_save , </div>
<div class="line"><a name="l00395"></a><span class="lineno"> 395</span>  <a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a5408647e441ba1163482e2191bcccc80">IonLow</a>[nelem] );</div>
<div class="line"><a name="l00396"></a><span class="lineno"> 396</span>  }</div>
<div class="line"><a name="l00397"></a><span class="lineno"> 397</span>  <span class="keywordflow">if</span>( lgLo_Down )</div>
<div class="line"><a name="l00398"></a><span class="lineno"> 398</span>  {</div>
<div class="line"><a name="l00399"></a><span class="lineno"> 399</span>  fprintf(<a class="code" href="cddefines_8cpp.html#a94bc49f6569c17375ac7fbf6a66f6dd0">ioQQQ</a>,<span class="stringliteral">"low dn %li to %li"</span>,</div>
<div class="line"><a name="l00400"></a><span class="lineno"> 400</span>  ion_lo_save , </div>
<div class="line"><a name="l00401"></a><span class="lineno"> 401</span>  <a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a5408647e441ba1163482e2191bcccc80">IonLow</a>[nelem] );</div>
<div class="line"><a name="l00402"></a><span class="lineno"> 402</span>  }</div>
<div class="line"><a name="l00403"></a><span class="lineno"> 403</span>  fprintf(<a class="code" href="cddefines_8cpp.html#a94bc49f6569c17375ac7fbf6a66f6dd0">ioQQQ</a>,<span class="stringliteral">"\n"</span> );</div>
<div class="line"><a name="l00404"></a><span class="lineno"> 404</span>  }</div>
<div class="line"><a name="l00405"></a><span class="lineno"> 405</span>  }</div>
<div class="line"><a name="l00406"></a><span class="lineno"> 406</span>  }</div>
<div class="line"><a name="l00407"></a><span class="lineno"> 407</span> </div>
<div class="line"><a name="l00408"></a><span class="lineno"> 408</span>  <span class="comment">/* only assert that the stage above the highest has a population of</span></div>
<div class="line"><a name="l00409"></a><span class="lineno"> 409</span> <span class="comment"> * zero if that stage exists */</span></div>
<div class="line"><a name="l00410"></a><span class="lineno"> 410</span>  <span class="keywordflow">if</span>(<a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a54b5ad4bfa10e31c0d18511f31b54b54">IonHigh</a>[nelem] < nelem+1 )</div>
<div class="line"><a name="l00411"></a><span class="lineno"> 411</span>  <a class="code" href="cddefines_8h.html#a092bd7bb2cb7fd9f483b6995cee61bc0">ASSERT</a>( <a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a9f73720f209b1536b1d32300b52a9845">xIonDense</a>[nelem][<a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a54b5ad4bfa10e31c0d18511f31b54b54">IonHigh</a>[nelem]+1] == 0. );</div>
<div class="line"><a name="l00412"></a><span class="lineno"> 412</span> </div>
<div class="line"><a name="l00413"></a><span class="lineno"> 413</span>  <span class="comment">/* option to print if any trimming occurred */</span></div>
<div class="line"><a name="l00414"></a><span class="lineno"> 414</span>  <span class="keywordflow">if</span>( lgHi_Down || lgHi_Up || lgLo_Up || lgLo_Down )</div>
<div class="line"><a name="l00415"></a><span class="lineno"> 415</span>  {</div>
<div class="line"><a name="l00416"></a><span class="lineno"> 416</span>  <a class="code" href="conv_8cpp.html#a02aae728cb00079244fd6d41fefdc959">conv</a>.<a class="code" href="structt__conv.html#a3da31c32fefa625476679a7be74be822">lgIonStageTrimed</a> = <span class="keyword">true</span>;</div>
<div class="line"><a name="l00417"></a><span class="lineno"> 417</span>  {</div>
<div class="line"><a name="l00418"></a><span class="lineno"> 418</span>  <span class="comment">/* option to print out what has happened so far .... */</span></div>
<div class="line"><a name="l00419"></a><span class="lineno"> 419</span>  <span class="keyword">enum</span> {DEBUG_LOC=<span class="keyword">false</span>};</div>
<div class="line"><a name="l00420"></a><span class="lineno"> 420</span>  <span class="keywordflow">if</span>( DEBUG_LOC && nelem==<a class="code" href="cddefines_8h.html#a998e102b7d6537d3ef5200647c4b8559">ipHELIUM</a> )</div>
<div class="line"><a name="l00421"></a><span class="lineno"> 421</span>  {</div>
<div class="line"><a name="l00422"></a><span class="lineno"> 422</span>  fprintf(<a class="code" href="cddefines_8cpp.html#a94bc49f6569c17375ac7fbf6a66f6dd0">ioQQQ</a>,<span class="stringliteral">"DEBUG ion_trim zone\t%.2f \t%li\t"</span>, <a class="code" href="cddefines_8cpp.html#af459c5261af1c904dd2380777af9918d">fnzone</a>, nelem);</div>
<div class="line"><a name="l00423"></a><span class="lineno"> 423</span>  <span class="keywordflow">if</span>( lgHi_Down )</div>
<div class="line"><a name="l00424"></a><span class="lineno"> 424</span>  fprintf(<a class="code" href="cddefines_8cpp.html#a94bc49f6569c17375ac7fbf6a66f6dd0">ioQQQ</a>,<span class="stringliteral">"\tHi_Down"</span>);</div>
<div class="line"><a name="l00425"></a><span class="lineno"> 425</span>  <span class="keywordflow">if</span>( lgHi_Up )</div>
<div class="line"><a name="l00426"></a><span class="lineno"> 426</span>  fprintf(<a class="code" href="cddefines_8cpp.html#a94bc49f6569c17375ac7fbf6a66f6dd0">ioQQQ</a>,<span class="stringliteral">"\tHi_Up"</span>);</div>
<div class="line"><a name="l00427"></a><span class="lineno"> 427</span>  <span class="keywordflow">if</span>( lgLo_Up )</div>
<div class="line"><a name="l00428"></a><span class="lineno"> 428</span>  fprintf(<a class="code" href="cddefines_8cpp.html#a94bc49f6569c17375ac7fbf6a66f6dd0">ioQQQ</a>,<span class="stringliteral">"\tLo_Up"</span>);</div>
<div class="line"><a name="l00429"></a><span class="lineno"> 429</span>  <span class="keywordflow">if</span>( lgLo_Down )</div>
<div class="line"><a name="l00430"></a><span class="lineno"> 430</span>  fprintf(<a class="code" href="cddefines_8cpp.html#a94bc49f6569c17375ac7fbf6a66f6dd0">ioQQQ</a>,<span class="stringliteral">"\tLo_Down"</span>);</div>
<div class="line"><a name="l00431"></a><span class="lineno"> 431</span>  fprintf(<a class="code" href="cddefines_8cpp.html#a94bc49f6569c17375ac7fbf6a66f6dd0">ioQQQ</a>,<span class="stringliteral">"\n"</span>);</div>
<div class="line"><a name="l00432"></a><span class="lineno"> 432</span>  }</div>
<div class="line"><a name="l00433"></a><span class="lineno"> 433</span>  }</div>
<div class="line"><a name="l00434"></a><span class="lineno"> 434</span>  }</div>
<div class="line"><a name="l00435"></a><span class="lineno"> 435</span> </div>
<div class="line"><a name="l00436"></a><span class="lineno"> 436</span>  <span class="comment">/* asserts that that densities of ion stages that are now turned </span></div>
<div class="line"><a name="l00437"></a><span class="lineno"> 437</span> <span class="comment"> * off are zero */</span></div>
<div class="line"><a name="l00438"></a><span class="lineno"> 438</span>  <span class="keywordflow">for</span>( ion=0; ion<<a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a5408647e441ba1163482e2191bcccc80">IonLow</a>[nelem]; ++ion )</div>
<div class="line"><a name="l00439"></a><span class="lineno"> 439</span>  {</div>
<div class="line"><a name="l00440"></a><span class="lineno"> 440</span>  <a class="code" href="cddefines_8h.html#a092bd7bb2cb7fd9f483b6995cee61bc0">ASSERT</a>( <a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a9f73720f209b1536b1d32300b52a9845">xIonDense</a>[nelem][ion] == 0. );</div>
<div class="line"><a name="l00441"></a><span class="lineno"> 441</span>  }</div>
<div class="line"><a name="l00442"></a><span class="lineno"> 442</span>  <span class="keywordflow">for</span>( ion=<a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a54b5ad4bfa10e31c0d18511f31b54b54">IonHigh</a>[nelem]+1; ion<nelem+1; ++ion )</div>
<div class="line"><a name="l00443"></a><span class="lineno"> 443</span>  {</div>
<div class="line"><a name="l00444"></a><span class="lineno"> 444</span>  <a class="code" href="cddefines_8h.html#a092bd7bb2cb7fd9f483b6995cee61bc0">ASSERT</a>( <a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a9f73720f209b1536b1d32300b52a9845">xIonDense</a>[nelem][ion] == 0. );</div>
<div class="line"><a name="l00445"></a><span class="lineno"> 445</span>  }</div>
<div class="line"><a name="l00446"></a><span class="lineno"> 446</span> </div>
<div class="line"><a name="l00447"></a><span class="lineno"> 447</span>  <span class="keywordflow">for</span>( ion=<a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a5408647e441ba1163482e2191bcccc80">IonLow</a>[nelem]; ion<=<a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a54b5ad4bfa10e31c0d18511f31b54b54">IonHigh</a>[nelem]; ++ion )</div>
<div class="line"><a name="l00448"></a><span class="lineno"> 448</span>  {</div>
<div class="line"><a name="l00449"></a><span class="lineno"> 449</span>  <span class="comment">/* in case where ionization stage was changed the</span></div>
<div class="line"><a name="l00450"></a><span class="lineno"> 450</span> <span class="comment"> * density is zero, we set it to SMALLFLOAT since a density</span></div>
<div class="line"><a name="l00451"></a><span class="lineno"> 451</span> <span class="comment"> * of zero is not possible */</span></div>
<div class="line"><a name="l00452"></a><span class="lineno"> 452</span>  <a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a9f73720f209b1536b1d32300b52a9845">xIonDense</a>[nelem][ion] = <a class="code" href="cddefines_8h.html#aa0c19e95ba3c1d759e15a79a136ce3c6">MAX2</a>(<a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a9f73720f209b1536b1d32300b52a9845">xIonDense</a>[nelem][ion], <a class="code" href="cpu_8h.html#af1d998d79044c9644b48f8d5647d57b6">SMALLFLOAT</a>);</div>
<div class="line"><a name="l00453"></a><span class="lineno"> 453</span>  }</div>
<div class="line"><a name="l00454"></a><span class="lineno"> 454</span>  <span class="keywordflow">return</span>;</div>
<div class="line"><a name="l00455"></a><span class="lineno"> 455</span> }</div>
<div class="ttc" id="cddefines_8h_html_a393053491edc087c17e89d597b6e16f5"><div class="ttname"><a href="cddefines_8h.html#a393053491edc087c17e89d597b6e16f5">MIN2</a></div><div class="ttdeci">#define MIN2</div><div class="ttdef"><b>Definition:</b> <a href="cddefines_8h_source.html#l00765">cddefines.h:765</a></div></div>
<div class="ttc" id="ion__trim_8cpp_html_a7408f10110a70b5dd9cdb3731d373dcf"><div class="ttname"><a href="ion__trim_8cpp.html#a7408f10110a70b5dd9cdb3731d373dcf">ion_trim</a></div><div class="ttdeci">void ion_trim(long int nelem)</div><div class="ttdef"><b>Definition:</b> <a href="ion__trim_8cpp_source.html#l00021">ion_trim.cpp:21</a></div></div>
<div class="ttc" id="struc_8h_html"><div class="ttname"><a href="struc_8h.html">struc.h</a></div></div>
<div class="ttc" id="mole_8cpp_html_a31d5a7dde43a2027f9257ef2d3577556"><div class="ttname"><a href="mole_8cpp.html#a31d5a7dde43a2027f9257ef2d3577556">mole_global</a></div><div class="ttdeci">t_mole_global mole_global</div><div class="ttdef"><b>Definition:</b> <a href="mole_8cpp_source.html#l00006">mole.cpp:6</a></div></div>
<div class="ttc" id="elementnames_8h_html"><div class="ttname"><a href="elementnames_8h.html">elementnames.h</a></div></div>
<div class="ttc" id="structt__radius_html_af333bba77be0c400d735bf3fb0ce5f52"><div class="ttname"><a href="structt__radius.html#af333bba77be0c400d735bf3fb0ce5f52">t_radius::Radius</a></div><div class="ttdeci">double Radius</div><div class="ttdef"><b>Definition:</b> <a href="radius_8h_source.html#l00022">radius.h:22</a></div></div>
<div class="ttc" id="classt__ionbal_html_a3e5ca6ac97772453778df5df249ea83b"><div class="ttname"><a href="classt__ionbal.html#a3e5ca6ac97772453778df5df249ea83b">t_ionbal::lgTrimhiOn</a></div><div class="ttdeci">bool lgTrimhiOn</div><div class="ttdef"><b>Definition:</b> <a href="ionbal_8h_source.html#l00095">ionbal.h:95</a></div></div>
<div class="ttc" id="thermal_8cpp_html_aa9fb6393d963cd8537ddeb8735d4eb6a"><div class="ttname"><a href="thermal_8cpp.html#aa9fb6393d963cd8537ddeb8735d4eb6a">thermal</a></div><div class="ttdeci">t_thermal thermal</div><div class="ttdef"><b>Definition:</b> <a href="thermal_8cpp_source.html#l00005">thermal.cpp:5</a></div></div>
<div class="ttc" id="classt__iso__sp_html_abed262ca9c3408aadb4a4e3e0c902172"><div class="ttname"><a href="classt__iso__sp.html#abed262ca9c3408aadb4a4e3e0c902172">t_iso_sp::st</a></div><div class="ttdeci">qList st</div><div class="ttdef"><b>Definition:</b> <a href="iso_8h_source.html#l00453">iso.h:453</a></div></div>
<div class="ttc" id="struc_8cpp_html_a192d1cf4701ae3d1cac1d72eff901717"><div class="ttname"><a href="struc_8cpp.html#a192d1cf4701ae3d1cac1d72eff901717">struc</a></div><div class="ttdeci">t_struc struc</div><div class="ttdef"><b>Definition:</b> <a href="struc_8cpp_source.html#l00006">struc.cpp:6</a></div></div>
<div class="ttc" id="heavy_8cpp_html_a0d3471b36699083d7f5363716ef19522"><div class="ttname"><a href="heavy_8cpp.html#a0d3471b36699083d7f5363716ef19522">Heavy</a></div><div class="ttdeci">t_Heavy Heavy</div><div class="ttdef"><b>Definition:</b> <a href="heavy_8cpp_source.html#l00005">heavy.cpp:5</a></div></div>
<div class="ttc" id="cpu_8h_html_af1d998d79044c9644b48f8d5647d57b6"><div class="ttname"><a href="cpu_8h.html#af1d998d79044c9644b48f8d5647d57b6">SMALLFLOAT</a></div><div class="ttdeci">const realnum SMALLFLOAT</div><div class="ttdef"><b>Definition:</b> <a href="cpu_8h_source.html#l00178">cpu.h:178</a></div></div>
<div class="ttc" id="cddefines_8h_html_a9386366f72568a2cb6ca627b91c6a63f"><div class="ttname"><a href="cddefines_8h.html#a9386366f72568a2cb6ca627b91c6a63f">NISO</a></div><div class="ttdeci">const int NISO</div><div class="ttdef"><b>Definition:</b> <a href="cddefines_8h_source.html#l00265">cddefines.h:265</a></div></div>
<div class="ttc" id="cddefines_8h_html_aa0c19e95ba3c1d759e15a79a136ce3c6"><div class="ttname"><a href="cddefines_8h.html#aa0c19e95ba3c1d759e15a79a136ce3c6">MAX2</a></div><div class="ttdeci">#define MAX2</div><div class="ttdef"><b>Definition:</b> <a href="cddefines_8h_source.html#l00786">cddefines.h:786</a></div></div>
<div class="ttc" id="conv_8cpp_html_a02aae728cb00079244fd6d41fefdc959"><div class="ttname"><a href="conv_8cpp.html#a02aae728cb00079244fd6d41fefdc959">conv</a></div><div class="ttdeci">t_conv conv</div><div class="ttdef"><b>Definition:</b> <a href="conv_8cpp_source.html#l00005">conv.cpp:5</a></div></div>
<div class="ttc" id="phycon_8cpp_html_a58e7356b28193ac2b0ee8b08f06939ba"><div class="ttname"><a href="phycon_8cpp.html#a58e7356b28193ac2b0ee8b08f06939ba">phycon</a></div><div class="ttdeci">t_phycon phycon</div><div class="ttdef"><b>Definition:</b> <a href="phycon_8cpp_source.html#l00006">phycon.cpp:6</a></div></div>
<div class="ttc" id="dense_8cpp_html_a61a760c32a26242e4eb24e230b3d5c57"><div class="ttname"><a href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a></div><div class="ttdeci">t_dense dense</div><div class="ttdef"><b>Definition:</b> <a href="dense_8cpp_source.html#l00024">dense.cpp:24</a></div></div>
<div class="ttc" id="classt__ionbal_html_a809b85ce594fd8d39edba1ba15f2fbea"><div class="ttname"><a href="classt__ionbal.html#a809b85ce594fd8d39edba1ba15f2fbea">t_ionbal::trimhi</a></div><div class="ttdeci">double trimhi</div><div class="ttdef"><b>Definition:</b> <a href="ionbal_8h_source.html#l00088">ionbal.h:88</a></div></div>
<div class="ttc" id="phycon_8h_html"><div class="ttname"><a href="phycon_8h.html">phycon.h</a></div></div>
<div class="ttc" id="thermal_8h_html"><div class="ttname"><a href="thermal_8h.html">thermal.h</a></div></div>
<div class="ttc" id="cddefines_8cpp_html_a94bc49f6569c17375ac7fbf6a66f6dd0"><div class="ttname"><a href="cddefines_8cpp.html#a94bc49f6569c17375ac7fbf6a66f6dd0">ioQQQ</a></div><div class="ttdeci">FILE * ioQQQ</div><div class="ttdef"><b>Definition:</b> <a href="cddefines_8cpp_source.html#l00007">cddefines.cpp:7</a></div></div>
<div class="ttc" id="dense_8h_html"><div class="ttname"><a href="dense_8h.html">dense.h</a></div></div>
<div class="ttc" id="radius_8h_html"><div class="ttname"><a href="radius_8h.html">radius.h</a></div></div>
<div class="ttc" id="cddefines_8cpp_html_a138c2d35a9db547dc6017c3ab69d3989"><div class="ttname"><a href="cddefines_8cpp.html#a138c2d35a9db547dc6017c3ab69d3989">nzone</a></div><div class="ttdeci">long int nzone</div><div class="ttdef"><b>Definition:</b> <a href="cddefines_8cpp_source.html#l00014">cddefines.cpp:14</a></div></div>
<div class="ttc" id="structt__dense_html_a18996563f56d945b7b432d79674b2f28"><div class="ttname"><a href="structt__dense.html#a18996563f56d945b7b432d79674b2f28">t_dense::density_low_limit</a></div><div class="ttdeci">double density_low_limit</div><div class="ttdef"><b>Definition:</b> <a href="dense_8h_source.html#l00197">dense.h:197</a></div></div>
<div class="ttc" id="structt__dense_html_a9f73720f209b1536b1d32300b52a9845"><div class="ttname"><a href="structt__dense.html#a9f73720f209b1536b1d32300b52a9845">t_dense::xIonDense</a></div><div class="ttdeci">double xIonDense[LIMELM][LIMELM+1]</div><div class="ttdef"><b>Definition:</b> <a href="dense_8h_source.html#l00125">dense.h:125</a></div></div>
<div class="ttc" id="elementnames_8cpp_html_ac0f7ebd5007005ba0c1a59e88517829e"><div class="ttname"><a href="elementnames_8cpp.html#ac0f7ebd5007005ba0c1a59e88517829e">elementnames</a></div><div class="ttdeci">t_elementnames elementnames</div><div class="ttdef"><b>Definition:</b> <a href="elementnames_8cpp_source.html#l00005">elementnames.cpp:5</a></div></div>
<div class="ttc" id="iso_8cpp_html_ab57c2051ee65e0236231a59103b5e80c"><div class="ttname"><a href="iso_8cpp.html#ab57c2051ee65e0236231a59103b5e80c">iso_sp</a></div><div class="ttdeci">t_iso_sp iso_sp[NISO][LIMELM]</div><div class="ttdef"><b>Definition:</b> <a href="iso_8cpp_source.html#l00008">iso.cpp:8</a></div></div>
<div class="ttc" id="structt__conv_html_a3da31c32fefa625476679a7be74be822"><div class="ttname"><a href="structt__conv.html#a3da31c32fefa625476679a7be74be822">t_conv::lgIonStageTrimed</a></div><div class="ttdeci">bool lgIonStageTrimed</div><div class="ttdef"><b>Definition:</b> <a href="conv_8h_source.html#l00189">conv.h:189</a></div></div>
<div class="ttc" id="structt__thermal_html_a199cd035e80c49312e6681be3e5362c5"><div class="ttname"><a href="structt__thermal.html#a199cd035e80c49312e6681be3e5362c5">t_thermal::heating</a></div><div class="ttdeci">double heating[LIMELM][LIMELM]</div><div class="ttdef"><b>Definition:</b> <a href="thermal_8h_source.html#l00158">thermal.h:158</a></div></div>
<div class="ttc" id="structt__conv_html_af927d37582560e64e2a55704f18aab0b"><div class="ttname"><a href="structt__conv.html#af927d37582560e64e2a55704f18aab0b">t_conv::lgSearch</a></div><div class="ttdeci">bool lgSearch</div><div class="ttdef"><b>Definition:</b> <a href="conv_8h_source.html#l00175">conv.h:175</a></div></div>
<div class="ttc" id="taulines_8h_html"><div class="ttname"><a href="taulines_8h.html">taulines.h</a></div></div>
<div class="ttc" id="ionbal_8cpp_html_a360ea90b4c4f87f220b366907da0a2be"><div class="ttname"><a href="ionbal_8cpp.html#a360ea90b4c4f87f220b366907da0a2be">ionbal</a></div><div class="ttdeci">t_ionbal ionbal</div><div class="ttdef"><b>Definition:</b> <a href="ionbal_8cpp_source.html#l00005">ionbal.cpp:5</a></div></div>
<div class="ttc" id="iso_8h_html"><div class="ttname"><a href="iso_8h.html">iso.h</a></div></div>
<div class="ttc" id="rfield_8cpp_html_ae577590833d90679b27a7e2b237ee667"><div class="ttname"><a href="rfield_8cpp.html#ae577590833d90679b27a7e2b237ee667">rfield</a></div><div class="ttdeci">t_rfield rfield</div><div class="ttdef"><b>Definition:</b> <a href="rfield_8cpp_source.html#l00008">rfield.cpp:8</a></div></div>
<div class="ttc" id="structt__dense_html_a54b5ad4bfa10e31c0d18511f31b54b54"><div class="ttname"><a href="structt__dense.html#a54b5ad4bfa10e31c0d18511f31b54b54">t_dense::IonHigh</a></div><div class="ttdeci">long int IonHigh[LIMELM+1]</div><div class="ttdef"><b>Definition:</b> <a href="dense_8h_source.html#l00120">dense.h:120</a></div></div>
<div class="ttc" id="cddefines_8h_html_a9aeda5ccf905f7d5241c0fe35434c820"><div class="ttname"><a href="cddefines_8h.html#a9aeda5ccf905f7d5241c0fe35434c820">realnum</a></div><div class="ttdeci">float realnum</div><div class="ttdef"><b>Definition:</b> <a href="cddefines_8h_source.html#l00107">cddefines.h:107</a></div></div>
<div class="ttc" id="conv_8h_html"><div class="ttname"><a href="conv_8h.html">conv.h</a></div></div>
<div class="ttc" id="ionbal_8h_html"><div class="ttname"><a href="ionbal_8h.html">ionbal.h</a></div></div>
<div class="ttc" id="heavy_8h_html"><div class="ttname"><a href="heavy_8h.html">heavy.h</a></div></div>
<div class="ttc" id="radius_8cpp_html_ad57f06f64461f4325506113ba07f29fa"><div class="ttname"><a href="radius_8cpp.html#ad57f06f64461f4325506113ba07f29fa">radius</a></div><div class="ttdeci">t_radius radius</div><div class="ttdef"><b>Definition:</b> <a href="radius_8cpp_source.html#l00005">radius.cpp:5</a></div></div>
<div class="ttc" id="structt__conv_html_a0c89351921596be0d67c8badf77a448e"><div class="ttname"><a href="structt__conv.html#a0c89351921596be0d67c8badf77a448e">t_conv::nTotalIoniz</a></div><div class="ttdeci">long int nTotalIoniz</div><div class="ttdef"><b>Definition:</b> <a href="conv_8h_source.html#l00166">conv.h:166</a></div></div>
<div class="ttc" id="structt__dense_html_ac3103e7dcf065b405339072b2c833328"><div class="ttname"><a href="structt__dense.html#ac3103e7dcf065b405339072b2c833328">t_dense::gas_phase</a></div><div class="ttdeci">realnum gas_phase[LIMELM]</div><div class="ttdef"><b>Definition:</b> <a href="dense_8h_source.html#l00071">dense.h:71</a></div></div>
<div class="ttc" id="structt__dense_html_a5408647e441ba1163482e2191bcccc80"><div class="ttname"><a href="structt__dense.html#a5408647e441ba1163482e2191bcccc80">t_dense::IonLow</a></div><div class="ttdeci">long int IonLow[LIMELM+1]</div><div class="ttdef"><b>Definition:</b> <a href="dense_8h_source.html#l00119">dense.h:119</a></div></div>
<div class="ttc" id="cddefines_8h_html_a092bd7bb2cb7fd9f483b6995cee61bc0"><div class="ttname"><a href="cddefines_8h.html#a092bd7bb2cb7fd9f483b6995cee61bc0">ASSERT</a></div><div class="ttdeci">#define ASSERT(exp)</div><div class="ttdef"><b>Definition:</b> <a href="cddefines_8h_source.html#l00582">cddefines.h:582</a></div></div>
<div class="ttc" id="structt__rfield_html_ab80ba75cc614c2e11602c627ccb068a5"><div class="ttname"><a href="structt__rfield.html#ab80ba75cc614c2e11602c627ccb068a5">t_rfield::anu</a></div><div class="ttdeci">double * anu</div><div class="ttdef"><b>Definition:</b> <a href="rfield_8h_source.html#l00058">rfield.h:58</a></div></div>
<div class="ttc" id="cddefines_8h_html"><div class="ttname"><a href="cddefines_8h.html">cddefines.h</a></div></div>
<div class="ttc" id="cddefines_8h_html_a625741fe64429312469751842aab8216"><div class="ttname"><a href="cddefines_8h.html#a625741fe64429312469751842aab8216">LIMELM</a></div><div class="ttdeci">const int LIMELM</div><div class="ttdef"><b>Definition:</b> <a href="cddefines_8h_source.html#l00262">cddefines.h:262</a></div></div>
<div class="ttc" id="structt___heavy_html_ae16a715e3f303c32d21c5f74c0da3744"><div class="ttname"><a href="structt___heavy.html#ae16a715e3f303c32d21c5f74c0da3744">t_Heavy::Valence_IP_Ryd</a></div><div class="ttdeci">double Valence_IP_Ryd[LIMELM][LIMELM]</div><div class="ttdef"><b>Definition:</b> <a href="heavy_8h_source.html#l00024">heavy.h:24</a></div></div>
<div class="ttc" id="cddefines_8h_html_ada0cfa6927ba3683adc971d17643f2e5"><div class="ttname"><a href="cddefines_8h.html#ada0cfa6927ba3683adc971d17643f2e5">DEBUG_ENTRY</a></div><div class="ttdeci">#define DEBUG_ENTRY(funcname)</div><div class="ttdef"><b>Definition:</b> <a href="cddefines_8h_source.html#l00688">cddefines.h:688</a></div></div>
<div class="ttc" id="cddefines_8h_html_a998e102b7d6537d3ef5200647c4b8559"><div class="ttname"><a href="cddefines_8h.html#a998e102b7d6537d3ef5200647c4b8559">ipHELIUM</a></div><div class="ttdeci">const int ipHELIUM</div><div class="ttdef"><b>Definition:</b> <a href="cddefines_8h_source.html#l00310">cddefines.h:310</a></div></div>
<div class="ttc" id="structt__phycon_html_a9635f69826bc216fb4a6899785925c3a"><div class="ttname"><a href="structt__phycon.html#a9635f69826bc216fb4a6899785925c3a">t_phycon::te_ryd</a></div><div class="ttdeci">double te_ryd</div><div class="ttdef"><b>Definition:</b> <a href="phycon_8h_source.html#l00017">phycon.h:17</a></div></div>
<div class="ttc" id="structt__struc_html_a964afea1dad9b843c3e23c30744d080a"><div class="ttname"><a href="structt__struc.html#a964afea1dad9b843c3e23c30744d080a">t_struc::gas_phase</a></div><div class="ttdeci">realnum ** gas_phase</div><div class="ttdef"><b>Definition:</b> <a href="struc_8h_source.html#l00075">struc.h:75</a></div></div>
<div class="ttc" id="mole_8h_html"><div class="ttname"><a href="mole_8h.html">mole.h</a></div></div>
<div class="ttc" id="cddefines_8h_html_ad1fdf827e851b9f69048a3ded076569b"><div class="ttname"><a href="cddefines_8h.html#ad1fdf827e851b9f69048a3ded076569b">SDIV</a></div><div class="ttdeci">sys_float SDIV(sys_float x)</div><div class="ttdef"><b>Definition:</b> <a href="cddefines_8h_source.html#l00956">cddefines.h:956</a></div></div>
<div class="ttc" id="classt__ionbal_html_abb62488a68782938b1ee56c1d02847ad"><div class="ttname"><a href="classt__ionbal.html#abb62488a68782938b1ee56c1d02847ad">t_ionbal::trimlo</a></div><div class="ttdeci">double trimlo</div><div class="ttdef"><b>Definition:</b> <a href="ionbal_8h_source.html#l00088">ionbal.h:88</a></div></div>
<div class="ttc" id="classt__iso__sp_html_a19dcfe5bb72eddf5a23d02ed82bc1d00"><div class="ttname"><a href="classt__iso__sp.html#a19dcfe5bb72eddf5a23d02ed82bc1d00">t_iso_sp::numLevels_max</a></div><div class="ttdeci">long int numLevels_max</div><div class="ttdef"><b>Definition:</b> <a href="iso_8h_source.html#l00493">iso.h:493</a></div></div>
<div class="ttc" id="structt__elementnames_html_af862e7af6aac5ce21ade0a6c85289c38"><div class="ttname"><a href="structt__elementnames.html#af862e7af6aac5ce21ade0a6c85289c38">t_elementnames::chElementName</a></div><div class="ttdeci">char chElementName[LIMELM][CHARS_ELEMENT_NAME]</div><div class="ttdef"><b>Definition:</b> <a href="elementnames_8h_source.html#l00017">elementnames.h:17</a></div></div>
<div class="ttc" id="rfield_8h_html"><div class="ttname"><a href="rfield_8h.html">rfield.h</a></div></div>
<div class="ttc" id="cddefines_8cpp_html_af459c5261af1c904dd2380777af9918d"><div class="ttname"><a href="cddefines_8cpp.html#af459c5261af1c904dd2380777af9918d">fnzone</a></div><div class="ttdeci">double fnzone</div><div class="ttdef"><b>Definition:</b> <a href="cddefines_8cpp_source.html#l00015">cddefines.cpp:15</a></div></div>
<div class="ttc" id="classt__mole__global_html_ad5b4917bd1a9fab967242f060be50f78"><div class="ttname"><a href="classt__mole__global.html#ad5b4917bd1a9fab967242f060be50f78">t_mole_global::lgNoMole</a></div><div class="ttdeci">bool lgNoMole</div><div class="ttdef"><b>Definition:</b> <a href="mole_8h_source.html#l00277">mole.h:277</a></div></div>
<div class="ttc" id="cddefines_8h_html_ad230dc2b848c4445597e35b10e37bb74"><div class="ttname"><a href="cddefines_8h.html#ad230dc2b848c4445597e35b10e37bb74">ipHYDROGEN</a></div><div class="ttdeci">const int ipHYDROGEN</div><div class="ttdef"><b>Definition:</b> <a href="cddefines_8h_source.html#l00309">cddefines.h:309</a></div></div>
<div class="ttc" id="structt__rfield_html_aa61dca00b142fadf1b2013c670c6184c"><div class="ttname"><a href="structt__rfield.html#aa61dca00b142fadf1b2013c670c6184c">t_rfield::nflux</a></div><div class="ttdeci">long int nflux</div><div class="ttdef"><b>Definition:</b> <a href="rfield_8h_source.html#l00043">rfield.h:43</a></div></div>
<div class="ttc" id="structt__struc_html_a2a12044b0769eb3aafa311879e554883"><div class="ttname"><a href="structt__struc.html#a2a12044b0769eb3aafa311879e554883">t_struc::xIonDense</a></div><div class="ttdeci">realnum *** xIonDense</div><div class="ttdef"><b>Definition:</b> <a href="struc_8h_source.html#l00064">struc.h:64</a></div></div>
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