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<div class="title">opacity_addtotal.cpp</div> </div>
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<a href="opacity__addtotal_8cpp.html">Go to the documentation of this file.</a><div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno"> 1</span> <span class="comment">/* This file is part of Cloudy and is copyright (C)1978-2013 by Gary J. Ferland and</span></div>
<div class="line"><a name="l00002"></a><span class="lineno"> 2</span> <span class="comment"> * others. For conditions of distribution and use see copyright notice in license.txt */</span></div>
<div class="line"><a name="l00003"></a><span class="lineno"> 3</span> <span class="comment">/*OpacityAddTotal derive total opacity for this position,</span></div>
<div class="line"><a name="l00004"></a><span class="lineno"> 4</span> <span class="comment"> * called by ConvBase */</span></div>
<div class="line"><a name="l00005"></a><span class="lineno"> 5</span> <span class="preprocessor">#include "<a class="code" href="cddefines_8h.html">cddefines.h</a>"</span></div>
<div class="line"><a name="l00006"></a><span class="lineno"> 6</span> <span class="preprocessor">#include "<a class="code" href="physconst_8h.html">physconst.h</a>"</span></div>
<div class="line"><a name="l00007"></a><span class="lineno"> 7</span> <span class="preprocessor">#include "<a class="code" href="iso_8h.html">iso.h</a>"</span></div>
<div class="line"><a name="l00008"></a><span class="lineno"> 8</span> <span class="preprocessor">#include "<a class="code" href="ipoint_8h.html">ipoint.h</a>"</span></div>
<div class="line"><a name="l00009"></a><span class="lineno"> 9</span> <span class="preprocessor">#include "<a class="code" href="grainvar_8h.html">grainvar.h</a>"</span></div>
<div class="line"><a name="l00010"></a><span class="lineno"> 10</span> <span class="preprocessor">#include "<a class="code" href="ca_8h.html">ca.h</a>"</span></div>
<div class="line"><a name="l00011"></a><span class="lineno"> 11</span> <span class="preprocessor">#include "<a class="code" href="rfield_8h.html">rfield.h</a>"</span></div>
<div class="line"><a name="l00012"></a><span class="lineno"> 12</span> <span class="preprocessor">#include "<a class="code" href="oxy_8h.html">oxy.h</a>"</span></div>
<div class="line"><a name="l00013"></a><span class="lineno"> 13</span> <span class="preprocessor">#include "<a class="code" href="mole_8h.html">mole.h</a>"</span></div>
<div class="line"><a name="l00014"></a><span class="lineno"> 14</span> <span class="preprocessor">#include "<a class="code" href="h2_8h.html">h2.h</a>"</span></div>
<div class="line"><a name="l00015"></a><span class="lineno"> 15</span> <span class="preprocessor">#include "<a class="code" href="h2__priv_8h.html">h2_priv.h</a>"</span></div>
<div class="line"><a name="l00016"></a><span class="lineno"> 16</span> <span class="preprocessor">#include "<a class="code" href="hmi_8h.html">hmi.h</a>"</span></div>
<div class="line"><a name="l00017"></a><span class="lineno"> 17</span> <span class="preprocessor">#include "<a class="code" href="dense_8h.html">dense.h</a>"</span></div>
<div class="line"><a name="l00018"></a><span class="lineno"> 18</span> <span class="preprocessor">#include "<a class="code" href="atoms_8h.html">atoms.h</a>"</span></div>
<div class="line"><a name="l00019"></a><span class="lineno"> 19</span> <span class="preprocessor">#include "<a class="code" href="conv_8h.html">conv.h</a>"</span></div>
<div class="line"><a name="l00020"></a><span class="lineno"> 20</span> <span class="preprocessor">#include "<a class="code" href="ionbal_8h.html">ionbal.h</a>"</span></div>
<div class="line"><a name="l00021"></a><span class="lineno"> 21</span> <span class="preprocessor">#include "<a class="code" href="trace_8h.html">trace.h</a>"</span></div>
<div class="line"><a name="l00022"></a><span class="lineno"> 22</span> <span class="preprocessor">#include "<a class="code" href="hmi_8h.html">hmi.h</a>"</span></div>
<div class="line"><a name="l00023"></a><span class="lineno"> 23</span> <span class="preprocessor">#include "<a class="code" href="phycon_8h.html">phycon.h</a>"</span></div>
<div class="line"><a name="l00024"></a><span class="lineno"> 24</span> <span class="preprocessor">#include "<a class="code" href="opacity_8h.html">opacity.h</a>"</span></div>
<div class="line"><a name="l00025"></a><span class="lineno"> 25</span> <span class="preprocessor">#include "<a class="code" href="taulines_8h.html">taulines.h</a>"</span></div>
<div class="line"><a name="l00026"></a><span class="lineno"> 26</span> </div>
<div class="line"><a name="l00027"></a><span class="lineno"><a class="line" href="opacity__addtotal_8cpp.html#a8e27634bc5c92104307c7e94ec0e0dc6"> 27</a></span> <span class="keywordtype">void</span> <a class="code" href="opacity_8h.html#a8e27634bc5c92104307c7e94ec0e0dc6">OpacityAddTotal</a>(<span class="keywordtype">void</span>)</div>
<div class="line"><a name="l00028"></a><span class="lineno"> 28</span> {</div>
<div class="line"><a name="l00029"></a><span class="lineno"> 29</span>  <span class="keywordtype">long</span> <span class="keywordtype">int</span> i, </div>
<div class="line"><a name="l00030"></a><span class="lineno"> 30</span>  ion,</div>
<div class="line"><a name="l00031"></a><span class="lineno"> 31</span>  ipHi,</div>
<div class="line"><a name="l00032"></a><span class="lineno"> 32</span>  ipISO,</div>
<div class="line"><a name="l00033"></a><span class="lineno"> 33</span>  ipop,</div>
<div class="line"><a name="l00034"></a><span class="lineno"> 34</span>  limit,</div>
<div class="line"><a name="l00035"></a><span class="lineno"> 35</span>  low,</div>
<div class="line"><a name="l00036"></a><span class="lineno"> 36</span>  nelem,</div>
<div class="line"><a name="l00037"></a><span class="lineno"> 37</span>  n; </div>
<div class="line"><a name="l00038"></a><span class="lineno"> 38</span>  <span class="keywordtype">double</span> DepartCoefInv ,</div>
<div class="line"><a name="l00039"></a><span class="lineno"> 39</span>  fac, </div>
<div class="line"><a name="l00040"></a><span class="lineno"> 40</span>  sum;</div>
<div class="line"><a name="l00041"></a><span class="lineno"> 41</span>  <a class="code" href="cddefines_8h.html#a9aeda5ccf905f7d5241c0fe35434c820">realnum</a> SaveOxygen1 , </div>
<div class="line"><a name="l00042"></a><span class="lineno"> 42</span>  SaveCarbon1;</div>
<div class="line"><a name="l00043"></a><span class="lineno"> 43</span> </div>
<div class="line"><a name="l00044"></a><span class="lineno"> 44</span>  <a class="code" href="cddefines_8h.html#ada0cfa6927ba3683adc971d17643f2e5">DEBUG_ENTRY</a>( <span class="stringliteral">"OpacityAddTotal()"</span> );</div>
<div class="line"><a name="l00045"></a><span class="lineno"> 45</span> </div>
<div class="line"><a name="l00046"></a><span class="lineno"> 46</span>  <span class="comment">/* OpacityZero will zero out scattering and absorption opacities,</span></div>
<div class="line"><a name="l00047"></a><span class="lineno"> 47</span> <span class="comment"> * and set OldOpacSave to opac to save it */</span></div>
<div class="line"><a name="l00048"></a><span class="lineno"> 48</span>  <a class="code" href="opacity_8h.html#a74fb058042e605311c90f0af8d623455">OpacityZero</a>();</div>
<div class="line"><a name="l00049"></a><span class="lineno"> 49</span> </div>
<div class="line"><a name="l00050"></a><span class="lineno"> 50</span>  <span class="comment">/* free electron scattering opacity, Compton recoil energy loss */</span></div>
<div class="line"><a name="l00051"></a><span class="lineno"> 51</span>  <span class="keywordflow">for</span>( i=0; i < <a class="code" href="rfield_8cpp.html#ae577590833d90679b27a7e2b237ee667">rfield</a>.<a class="code" href="structt__rfield.html#aa61dca00b142fadf1b2013c670c6184c">nflux</a>; i++ )</div>
<div class="line"><a name="l00052"></a><span class="lineno"> 52</span>  {</div>
<div class="line"><a name="l00053"></a><span class="lineno"> 53</span>  <span class="comment">/* scattering part of total opacity */</span></div>
<div class="line"><a name="l00054"></a><span class="lineno"> 54</span>  <a class="code" href="opacity_8cpp.html#a26e033ebfaf72894ebadbe8a4b0d85c9">opac</a>.<a class="code" href="structt__opac.html#a664caf74d574f41ddcb953f008803b80">opacity_sct</a>[i] += <a class="code" href="opacity_8cpp.html#a26e033ebfaf72894ebadbe8a4b0d85c9">opac</a>.<a class="code" href="structt__opac.html#a1fc82277384d5b9fc3f9bc7baef259b9">OpacStack</a>[i-1+<a class="code" href="opacity_8cpp.html#a26e033ebfaf72894ebadbe8a4b0d85c9">opac</a>.<a class="code" href="structt__opac.html#a92e316b4ce53196cf579a0d66bc0ffea">iopcom</a>]*</div>
<div class="line"><a name="l00055"></a><span class="lineno"> 55</span>  <a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a1adb121fb092a05193c82bccf4f47bb7">eden</a>;</div>
<div class="line"><a name="l00056"></a><span class="lineno"> 56</span>  }</div>
<div class="line"><a name="l00057"></a><span class="lineno"> 57</span> </div>
<div class="line"><a name="l00058"></a><span class="lineno"> 58</span>  <span class="comment">/* opacity due to Compton bound recoil ionization */</span></div>
<div class="line"><a name="l00059"></a><span class="lineno"> 59</span>  <span class="keywordflow">for</span>( nelem=<a class="code" href="cddefines_8h.html#ad230dc2b848c4445597e35b10e37bb74">ipHYDROGEN</a>; nelem<<a class="code" href="cddefines_8h.html#a625741fe64429312469751842aab8216">LIMELM</a>; ++nelem )</div>
<div class="line"><a name="l00060"></a><span class="lineno"> 60</span>  {</div>
<div class="line"><a name="l00061"></a><span class="lineno"> 61</span>  <span class="keywordflow">if</span>( <a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a25e609b78edbf673f25bc6b68a1c7af1">lgElmtOn</a>[nelem] )</div>
<div class="line"><a name="l00062"></a><span class="lineno"> 62</span>  { </div>
<div class="line"><a name="l00063"></a><span class="lineno"> 63</span>  <span class="keywordflow">for</span>( ion=0; ion<nelem+1; ++ion )</div>
<div class="line"><a name="l00064"></a><span class="lineno"> 64</span>  {</div>
<div class="line"><a name="l00065"></a><span class="lineno"> 65</span>  <a class="code" href="cddefines_8h.html#a9aeda5ccf905f7d5241c0fe35434c820">realnum</a> factor = <a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a9f73720f209b1536b1d32300b52a9845">xIonDense</a>[nelem][ion];</div>
<div class="line"><a name="l00066"></a><span class="lineno"> 66</span>  <span class="comment">/*>>chng 05 nov 26, add molecular hydrogen assuming same</span></div>
<div class="line"><a name="l00067"></a><span class="lineno"> 67</span> <span class="comment"> * as two free hydrogen atoms - hence mult density by two</span></div>
<div class="line"><a name="l00068"></a><span class="lineno"> 68</span> <span class="comment"> *>>KEYWORD H2 bound Compton ionization */</span></div>
<div class="line"><a name="l00069"></a><span class="lineno"> 69</span>  <span class="keywordflow">if</span>( nelem==<a class="code" href="cddefines_8h.html#ad230dc2b848c4445597e35b10e37bb74">ipHYDROGEN</a> )</div>
<div class="line"><a name="l00070"></a><span class="lineno"> 70</span>  factor += <a class="code" href="hmi_8cpp.html#a79a7316378697465da74ad5093bdb950">hmi</a>.<a class="code" href="structt__hmi.html#a779920c75e30c622fc3924c51148bae2">H2_total</a>*2.f;</div>
<div class="line"><a name="l00071"></a><span class="lineno"> 71</span>  <span class="keywordflow">if</span>( factor > 0. )</div>
<div class="line"><a name="l00072"></a><span class="lineno"> 72</span>  {</div>
<div class="line"><a name="l00073"></a><span class="lineno"> 73</span>  <span class="comment">// loop_min and loop_max are needed to work around a bug in icc 10.0</span></div>
<div class="line"><a name="l00074"></a><span class="lineno"> 74</span>  <span class="keywordtype">long</span> loop_min = <a class="code" href="ionbal_8cpp.html#a360ea90b4c4f87f220b366907da0a2be">ionbal</a>.<a class="code" href="classt__ionbal.html#a4a2d81dfba8c762010f839275de46b6a">ipCompRecoil</a>[nelem][ion]-1;</div>
<div class="line"><a name="l00075"></a><span class="lineno"> 75</span>  <span class="keywordtype">long</span> loop_max = <a class="code" href="rfield_8cpp.html#ae577590833d90679b27a7e2b237ee667">rfield</a>.<a class="code" href="structt__rfield.html#aa61dca00b142fadf1b2013c670c6184c">nflux</a>;</div>
<div class="line"><a name="l00076"></a><span class="lineno"> 76</span>  <span class="comment">/* ionbal.nCompRecoilElec number of electrons in valence shell</span></div>
<div class="line"><a name="l00077"></a><span class="lineno"> 77</span> <span class="comment"> * that can compton recoil ionize */</span></div>
<div class="line"><a name="l00078"></a><span class="lineno"> 78</span>  factor *= <a class="code" href="ionbal_8cpp.html#a360ea90b4c4f87f220b366907da0a2be">ionbal</a>.<a class="code" href="classt__ionbal.html#adb9cd2258f325f3393e179d2867da33c">nCompRecoilElec</a>[nelem-ion];</div>
<div class="line"><a name="l00079"></a><span class="lineno"> 79</span>  <span class="keywordflow">for</span>( i=loop_min; i < loop_max; i++ )</div>
<div class="line"><a name="l00080"></a><span class="lineno"> 80</span>  {</div>
<div class="line"><a name="l00081"></a><span class="lineno"> 81</span>  <span class="comment">/* add in bound hydrogen electron scattering, treated as absorption */</span></div>
<div class="line"><a name="l00082"></a><span class="lineno"> 82</span>  <a class="code" href="opacity_8cpp.html#a26e033ebfaf72894ebadbe8a4b0d85c9">opac</a>.<a class="code" href="structt__opac.html#a7dd3774041d210c156a5734dc7b95ce7">opacity_abs</a>[i] += <a class="code" href="opacity_8cpp.html#a26e033ebfaf72894ebadbe8a4b0d85c9">opac</a>.<a class="code" href="structt__opac.html#a1fc82277384d5b9fc3f9bc7baef259b9">OpacStack</a>[i-1+<a class="code" href="opacity_8cpp.html#a26e033ebfaf72894ebadbe8a4b0d85c9">opac</a>.<a class="code" href="structt__opac.html#a92e316b4ce53196cf579a0d66bc0ffea">iopcom</a>]*factor;</div>
<div class="line"><a name="l00083"></a><span class="lineno"> 83</span>  }</div>
<div class="line"><a name="l00084"></a><span class="lineno"> 84</span>  }</div>
<div class="line"><a name="l00085"></a><span class="lineno"> 85</span>  }</div>
<div class="line"><a name="l00086"></a><span class="lineno"> 86</span>  }</div>
<div class="line"><a name="l00087"></a><span class="lineno"> 87</span>  }</div>
<div class="line"><a name="l00088"></a><span class="lineno"> 88</span> </div>
<div class="line"><a name="l00089"></a><span class="lineno"> 89</span>  <span class="comment">/* opacity due to pair production - does not matter what form these</span></div>
<div class="line"><a name="l00090"></a><span class="lineno"> 90</span> <span class="comment"> * elements are in */</span></div>
<div class="line"><a name="l00092"></a><span class="lineno"> 92</span>  sum = <a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#ac3103e7dcf065b405339072b2c833328">gas_phase</a>[<a class="code" href="cddefines_8h.html#ad230dc2b848c4445597e35b10e37bb74">ipHYDROGEN</a>] + 4.*<a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#ac3103e7dcf065b405339072b2c833328">gas_phase</a>[<a class="code" href="cddefines_8h.html#a998e102b7d6537d3ef5200647c4b8559">ipHELIUM</a>];</div>
<div class="line"><a name="l00093"></a><span class="lineno"> 93</span>  <a class="code" href="opacity_8h.html#ad23d4cd39b5a583c0fcb2f84dba06671">OpacityAdd1Subshell</a>(<a class="code" href="opacity_8cpp.html#a26e033ebfaf72894ebadbe8a4b0d85c9">opac</a>.<a class="code" href="structt__opac.html#a09fb5ca4cea902a5dfa2e2309c8579d2">ioppr</a>,<a class="code" href="opacity_8cpp.html#a26e033ebfaf72894ebadbe8a4b0d85c9">opac</a>.<a class="code" href="structt__opac.html#ada0f2e0737a757c09b20081b947702cb">ippr</a>,<a class="code" href="rfield_8cpp.html#ae577590833d90679b27a7e2b237ee667">rfield</a>.<a class="code" href="structt__rfield.html#aa61dca00b142fadf1b2013c670c6184c">nflux</a>,(<a class="code" href="cddefines_8h.html#a9aeda5ccf905f7d5241c0fe35434c820">realnum</a>)sum,<span class="charliteral">'s'</span>);</div>
<div class="line"><a name="l00094"></a><span class="lineno"> 94</span> </div>
<div class="line"><a name="l00095"></a><span class="lineno"> 95</span>  <span class="comment">/* free-free free free brems emission for all ions */</span></div>
<div class="line"><a name="l00096"></a><span class="lineno"> 96</span> </div>
<div class="line"><a name="l00097"></a><span class="lineno"> 97</span>  <span class="comment">/* >>chng 02 jul 21, use full set of ions and gaunt factor */</span></div>
<div class="line"><a name="l00098"></a><span class="lineno"> 98</span>  <span class="comment">/* ipEnergyBremsThin is index to energy where gas goes optically thin to brems,</span></div>
<div class="line"><a name="l00099"></a><span class="lineno"> 99</span> <span class="comment"> * so this loop is over optically thick frequencies */</span></div>
<div class="line"><a name="l00100"></a><span class="lineno"> 100</span>  <span class="keyword">static</span> <span class="keywordtype">double</span> *TotBremsAllIons;</div>
<div class="line"><a name="l00101"></a><span class="lineno"> 101</span>  <span class="keyword">static</span> <span class="keywordtype">bool</span> lgFirstTime=<span class="keyword">true</span>;</div>
<div class="line"><a name="l00102"></a><span class="lineno"> 102</span>  <span class="keywordtype">double</span> BremsThisEner,bfac, sumion[LIMELM+1];</div>
<div class="line"><a name="l00103"></a><span class="lineno"> 103</span>  <span class="keywordtype">long</span> <span class="keywordtype">int</span> ion_lo , ion_hi;</div>
<div class="line"><a name="l00104"></a><span class="lineno"> 104</span> </div>
<div class="line"><a name="l00105"></a><span class="lineno"> 105</span>  <span class="keywordflow">if</span>( lgFirstTime )</div>
<div class="line"><a name="l00106"></a><span class="lineno"> 106</span>  {</div>
<div class="line"><a name="l00107"></a><span class="lineno"> 107</span>  <span class="comment">/* rfield.nupper will not change in one coreload, so just malloc this once */</span></div>
<div class="line"><a name="l00108"></a><span class="lineno"> 108</span>  TotBremsAllIons = (<span class="keywordtype">double</span> *)<a class="code" href="cddefines_8h.html#a39581ccdcc8104b3f1b7cd4c51b33866">MALLOC</a>((<span class="keywordtype">unsigned</span> <span class="keywordtype">long</span>)<a class="code" href="rfield_8cpp.html#ae577590833d90679b27a7e2b237ee667">rfield</a>.<a class="code" href="structt__rfield.html#a57a59f4332c3c102a7b5bb7daad314f8">nupper</a>*<span class="keyword">sizeof</span>(double));</div>
<div class="line"><a name="l00109"></a><span class="lineno"> 109</span>  lgFirstTime = <span class="keyword">false</span>;</div>
<div class="line"><a name="l00110"></a><span class="lineno"> 110</span>  }</div>
<div class="line"><a name="l00111"></a><span class="lineno"> 111</span>  bfac = (<a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a1adb121fb092a05193c82bccf4f47bb7">eden</a>/1e20)/<a class="code" href="phycon_8cpp.html#a58e7356b28193ac2b0ee8b08f06939ba">phycon</a>.<a class="code" href="structt__phycon.html#a83c3efba125ab61bce8a10180c7ff839">sqrte</a>/1e10;</div>
<div class="line"><a name="l00112"></a><span class="lineno"> 112</span>  <span class="comment">/* gaunt factors depend only on photon energy and ion charge, so do</span></div>
<div class="line"><a name="l00113"></a><span class="lineno"> 113</span> <span class="comment"> * sum of ions here before entering into loop over photon energy */</span></div>
<div class="line"><a name="l00114"></a><span class="lineno"> 114</span>  sumion[0] = 0.;</div>
<div class="line"><a name="l00115"></a><span class="lineno"> 115</span>  <span class="keywordflow">for</span>(ion=1; ion<=LIMELM; ++ion )</div>
<div class="line"><a name="l00116"></a><span class="lineno"> 116</span>  {</div>
<div class="line"><a name="l00117"></a><span class="lineno"> 117</span>  sumion[ion] = 0.;</div>
<div class="line"><a name="l00118"></a><span class="lineno"> 118</span>  <span class="keywordflow">for</span>( nelem=<a class="code" href="cddefines_8h.html#a998e102b7d6537d3ef5200647c4b8559">ipHELIUM</a>; nelem < <a class="code" href="cddefines_8h.html#a625741fe64429312469751842aab8216">LIMELM</a>; ++nelem )</div>
<div class="line"><a name="l00119"></a><span class="lineno"> 119</span>  {</div>
<div class="line"><a name="l00120"></a><span class="lineno"> 120</span>  <span class="keywordflow">if</span>( <a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a25e609b78edbf673f25bc6b68a1c7af1">lgElmtOn</a>[nelem] && ion<=nelem+1 )</div>
<div class="line"><a name="l00121"></a><span class="lineno"> 121</span>  {</div>
<div class="line"><a name="l00122"></a><span class="lineno"> 122</span>  sumion[ion] += <a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a9f73720f209b1536b1d32300b52a9845">xIonDense</a>[nelem][ion];</div>
<div class="line"><a name="l00123"></a><span class="lineno"> 123</span>  }</div>
<div class="line"><a name="l00124"></a><span class="lineno"> 124</span>  }</div>
<div class="line"><a name="l00125"></a><span class="lineno"> 125</span>  <span class="comment">/* now include the charge, density, and temperature */</span></div>
<div class="line"><a name="l00126"></a><span class="lineno"> 126</span>  sumion[ion] *= <a class="code" href="cddefines_8h.html#a640dbf4a86409e02d9103d713bd54936">POW2</a>((<span class="keywordtype">double</span>)ion)*bfac;</div>
<div class="line"><a name="l00127"></a><span class="lineno"> 127</span>  }</div>
<div class="line"><a name="l00128"></a><span class="lineno"> 128</span> </div>
<div class="line"><a name="l00129"></a><span class="lineno"> 129</span>  <span class="comment">/* add molecular ions */</span></div>
<div class="line"><a name="l00130"></a><span class="lineno"> 130</span>  <span class="keywordflow">for</span>( <span class="keywordtype">long</span> ipMol = 0; ipMol<<a class="code" href="mole_8cpp.html#a31d5a7dde43a2027f9257ef2d3577556">mole_global</a>.<a class="code" href="classt__mole__global.html#ad164119341e844ce567c2978441cad0f">num_calc</a>; ipMol++ )</div>
<div class="line"><a name="l00131"></a><span class="lineno"> 131</span>  {</div>
<div class="line"><a name="l00132"></a><span class="lineno"> 132</span>  <span class="keywordflow">if</span>( !<a class="code" href="mole_8cpp.html#a31d5a7dde43a2027f9257ef2d3577556">mole_global</a>.<a class="code" href="classt__mole__global.html#ac95a58f6eb8ca5e805a47b7ebe1915fb">list</a>[ipMol]->isMonatomic() && <a class="code" href="mole_8cpp.html#a31d5a7dde43a2027f9257ef2d3577556">mole_global</a>.<a class="code" href="classt__mole__global.html#ac95a58f6eb8ca5e805a47b7ebe1915fb">list</a>[ipMol]->charge > 0 &&</div>
<div class="line"><a name="l00133"></a><span class="lineno"> 133</span>  <a class="code" href="mole_8cpp.html#a31d5a7dde43a2027f9257ef2d3577556">mole_global</a>.<a class="code" href="classt__mole__global.html#ac95a58f6eb8ca5e805a47b7ebe1915fb">list</a>[ipMol]->parentLabel.empty() &&</div>
<div class="line"><a name="l00134"></a><span class="lineno"> 134</span>  <a class="code" href="mole_8cpp.html#a31d5a7dde43a2027f9257ef2d3577556">mole_global</a>.<a class="code" href="classt__mole__global.html#ac95a58f6eb8ca5e805a47b7ebe1915fb">list</a>[ipMol]->label != <span class="stringliteral">"H2+"</span> &&</div>
<div class="line"><a name="l00135"></a><span class="lineno"> 135</span>  <a class="code" href="mole_8cpp.html#a31d5a7dde43a2027f9257ef2d3577556">mole_global</a>.<a class="code" href="classt__mole__global.html#ac95a58f6eb8ca5e805a47b7ebe1915fb">list</a>[ipMol]->label != <span class="stringliteral">"H3+"</span> )</div>
<div class="line"><a name="l00136"></a><span class="lineno"> 136</span>  { </div>
<div class="line"><a name="l00137"></a><span class="lineno"> 137</span>  <a class="code" href="cddefines_8h.html#a092bd7bb2cb7fd9f483b6995cee61bc0">ASSERT</a>( <a class="code" href="mole_8cpp.html#a31d5a7dde43a2027f9257ef2d3577556">mole_global</a>.<a class="code" href="classt__mole__global.html#ac95a58f6eb8ca5e805a47b7ebe1915fb">list</a>[ipMol]->charge < LIMELM+1 );</div>
<div class="line"><a name="l00138"></a><span class="lineno"> 138</span>  sumion[<a class="code" href="mole_8cpp.html#a31d5a7dde43a2027f9257ef2d3577556">mole_global</a>.<a class="code" href="classt__mole__global.html#ac95a58f6eb8ca5e805a47b7ebe1915fb">list</a>[ipMol]->charge] += <a class="code" href="mole_8cpp.html#a90c9c6b26e8a16663379c335308e6c6a">mole</a>.<a class="code" href="classt__mole__local.html#abe569d0d6105cb9c956783709b969307">species</a>[ipMol].den * <a class="code" href="cddefines_8h.html#a640dbf4a86409e02d9103d713bd54936">POW2</a>((<a class="code" href="cddefines_8h.html#a9aeda5ccf905f7d5241c0fe35434c820">realnum</a>)<a class="code" href="mole_8cpp.html#a31d5a7dde43a2027f9257ef2d3577556">mole_global</a>.<a class="code" href="classt__mole__global.html#ac95a58f6eb8ca5e805a47b7ebe1915fb">list</a>[ipMol]->charge)*bfac;</div>
<div class="line"><a name="l00139"></a><span class="lineno"> 139</span>  }</div>
<div class="line"><a name="l00140"></a><span class="lineno"> 140</span>  }</div>
<div class="line"><a name="l00141"></a><span class="lineno"> 141</span> </div>
<div class="line"><a name="l00142"></a><span class="lineno"> 142</span>  <span class="comment">/* now find lowest and highest ion we need to consider - following loop is over</span></div>
<div class="line"><a name="l00143"></a><span class="lineno"> 143</span> <span class="comment"> * full continuum and eats time </span></div>
<div class="line"><a name="l00144"></a><span class="lineno"> 144</span> <span class="comment"> * >>chng 05 oct 20, following had tests on ion being within bounds, bug,</span></div>
<div class="line"><a name="l00145"></a><span class="lineno"> 145</span> <span class="comment"> * changed to ion_lo and ion_hi */</span></div>
<div class="line"><a name="l00146"></a><span class="lineno"> 146</span>  ion_lo = 1;</div>
<div class="line"><a name="l00147"></a><span class="lineno"> 147</span>  <span class="keywordflow">while</span>( sumion[ion_lo]==0 && ion_lo<LIMELM-1 )</div>
<div class="line"><a name="l00148"></a><span class="lineno"> 148</span>  ++ion_lo;</div>
<div class="line"><a name="l00149"></a><span class="lineno"> 149</span>  ion_hi = <a class="code" href="cddefines_8h.html#a625741fe64429312469751842aab8216">LIMELM</a>;</div>
<div class="line"><a name="l00150"></a><span class="lineno"> 150</span>  <span class="keywordflow">while</span>( sumion[ion_hi]==0 && ion_hi>0 )</div>
<div class="line"><a name="l00151"></a><span class="lineno"> 151</span>  --ion_hi;</div>
<div class="line"><a name="l00152"></a><span class="lineno"> 152</span> </div>
<div class="line"><a name="l00153"></a><span class="lineno"> 153</span>  <span class="keyword">const</span> <a class="code" href="classmolezone.html">molezone</a> *MH2p = <a class="code" href="mole_8h.html#aaa8c58e96a89149454224f87acefcf90">findspecieslocal</a>(<span class="stringliteral">"H2+"</span>); </div>
<div class="line"><a name="l00154"></a><span class="lineno"> 154</span>  <span class="keyword">const</span> <a class="code" href="classmolezone.html">molezone</a> *MH3p = <a class="code" href="mole_8h.html#aaa8c58e96a89149454224f87acefcf90">findspecieslocal</a>(<span class="stringliteral">"H3+"</span>); </div>
<div class="line"><a name="l00155"></a><span class="lineno"> 155</span>  <span class="keywordflow">for</span>( i=0; i < <a class="code" href="rfield_8cpp.html#ae577590833d90679b27a7e2b237ee667">rfield</a>.<a class="code" href="structt__rfield.html#aa61dca00b142fadf1b2013c670c6184c">nflux</a>; i++ )</div>
<div class="line"><a name="l00156"></a><span class="lineno"> 156</span>  {</div>
<div class="line"><a name="l00157"></a><span class="lineno"> 157</span>  <span class="comment">/* do hydrogen first, before main loop since want to add on H- brems */</span></div>
<div class="line"><a name="l00158"></a><span class="lineno"> 158</span>  nelem = <a class="code" href="cddefines_8h.html#ad230dc2b848c4445597e35b10e37bb74">ipHYDROGEN</a>;</div>
<div class="line"><a name="l00159"></a><span class="lineno"> 159</span>  ion = 1;<span class="comment">/* >>chng 02 nov 07, add charged ions as H+ */</span></div>
<div class="line"><a name="l00160"></a><span class="lineno"> 160</span> </div>
<div class="line"><a name="l00161"></a><span class="lineno"> 161</span>  BremsThisEner = bfac * <a class="code" href="rfield_8cpp.html#ae577590833d90679b27a7e2b237ee667">rfield</a>.<a class="code" href="structt__rfield.html#a7e78b9610ff90cb0d463adb28b62a38f">gff</a>[ion][i] * (<a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a9f73720f209b1536b1d32300b52a9845">xIonDense</a>[<a class="code" href="cddefines_8h.html#ad230dc2b848c4445597e35b10e37bb74">ipHYDROGEN</a>][1]+MH2p-><a class="code" href="classmolezone.html#a49a86bc44599abacd2eb714471ca464d">den</a>+MH3p-><a class="code" href="classmolezone.html#a49a86bc44599abacd2eb714471ca464d">den</a>);</div>
<div class="line"><a name="l00162"></a><span class="lineno"> 162</span>  <span class="comment">/* for case of hydrogen, add H- brems - OpacStack contains the ratio</span></div>
<div class="line"><a name="l00163"></a><span class="lineno"> 163</span> <span class="comment"> * of the H- to H brems cross section - multiply by this and H(1s) population */</span></div>
<div class="line"><a name="l00164"></a><span class="lineno"> 164</span>  BremsThisEner += bfac * <a class="code" href="rfield_8cpp.html#ae577590833d90679b27a7e2b237ee667">rfield</a>.<a class="code" href="structt__rfield.html#a7e78b9610ff90cb0d463adb28b62a38f">gff</a>[ion][i] * <a class="code" href="opacity_8cpp.html#a26e033ebfaf72894ebadbe8a4b0d85c9">opac</a>.<a class="code" href="structt__opac.html#a1fc82277384d5b9fc3f9bc7baef259b9">OpacStack</a>[i-1+<a class="code" href="opacity_8cpp.html#a26e033ebfaf72894ebadbe8a4b0d85c9">opac</a>.<a class="code" href="structt__opac.html#afabd1dcea7e40cf8470f15cf207eb935">iphmra</a>] * <a class="code" href="iso_8cpp.html#ab57c2051ee65e0236231a59103b5e80c">iso_sp</a>[<a class="code" href="iso_8h.html#ac9adcc2e25a84dbcfaf67a9753504f29">ipH_LIKE</a>][<a class="code" href="cddefines_8h.html#ad230dc2b848c4445597e35b10e37bb74">ipHYDROGEN</a>].<a class="code" href="classt__iso__sp.html#abed262ca9c3408aadb4a4e3e0c902172">st</a>[<a class="code" href="iso_8h.html#a1c4a2ccd8a77c449fcf2ec2eb4561c22">ipH1s</a>].Pop();</div>
<div class="line"><a name="l00165"></a><span class="lineno"> 165</span> </div>
<div class="line"><a name="l00166"></a><span class="lineno"> 166</span>  <span class="comment">/* there is at least one standard test (grainlte) which has ZERO ionization -</span></div>
<div class="line"><a name="l00167"></a><span class="lineno"> 167</span> <span class="comment"> * this assert will pass that test (the ==0) and also the usual case */</span></div>
<div class="line"><a name="l00168"></a><span class="lineno"> 168</span>  <span class="comment">/* ASSERT( (dense.xIonDense[nelem][ion]==0.) || (TotBremsAllIons[i] > 0.) );*/</span></div>
<div class="line"><a name="l00169"></a><span class="lineno"> 169</span> </div>
<div class="line"><a name="l00170"></a><span class="lineno"> 170</span>  <span class="comment">/* chng 02 may 16, by Ryan...do all brems for all ions in one fell swoop,</span></div>
<div class="line"><a name="l00171"></a><span class="lineno"> 171</span> <span class="comment"> * using gaunt factors from rfield.gff. */</span></div>
<div class="line"><a name="l00172"></a><span class="lineno"> 172</span>  <span class="comment">/* >>chng 05 jul 11 reorganize loop for speed */</span></div>
<div class="line"><a name="l00173"></a><span class="lineno"> 173</span>  <span class="keywordflow">for</span>(ion=ion_lo; ion<=ion_hi; ++ion )</div>
<div class="line"><a name="l00174"></a><span class="lineno"> 174</span>  {</div>
<div class="line"><a name="l00175"></a><span class="lineno"> 175</span>  BremsThisEner += sumion[ion]*<a class="code" href="rfield_8cpp.html#ae577590833d90679b27a7e2b237ee667">rfield</a>.<a class="code" href="structt__rfield.html#a7e78b9610ff90cb0d463adb28b62a38f">gff</a>[ion][i];</div>
<div class="line"><a name="l00176"></a><span class="lineno"> 176</span>  }</div>
<div class="line"><a name="l00177"></a><span class="lineno"> 177</span>  <a class="code" href="cddefines_8h.html#a092bd7bb2cb7fd9f483b6995cee61bc0">ASSERT</a>( !<a class="code" href="cddefines_8h.html#a075c8459d7e501109174c1a2fdc5cd7e">isnan</a>( BremsThisEner ) );</div>
<div class="line"><a name="l00178"></a><span class="lineno"> 178</span>  TotBremsAllIons[i] = BremsThisEner;</div>
<div class="line"><a name="l00179"></a><span class="lineno"> 179</span> </div>
<div class="line"><a name="l00180"></a><span class="lineno"> 180</span>  <span class="comment">/* >>>chng 05 jul 12, bring these two loops together */</span></div>
<div class="line"><a name="l00181"></a><span class="lineno"> 181</span>  <span class="keywordflow">if</span>( <a class="code" href="rfield_8cpp.html#ae577590833d90679b27a7e2b237ee667">rfield</a>.<a class="code" href="structt__rfield.html#ac936125b75f9726c50fa0b11ccb6ea19">ContBoltz</a>[i] < 0.995 )</div>
<div class="line"><a name="l00182"></a><span class="lineno"> 182</span>  {</div>
<div class="line"><a name="l00183"></a><span class="lineno"> 183</span>  TotBremsAllIons[i] *= <a class="code" href="opacity_8cpp.html#a26e033ebfaf72894ebadbe8a4b0d85c9">opac</a>.<a class="code" href="structt__opac.html#a1fc82277384d5b9fc3f9bc7baef259b9">OpacStack</a>[i-1+<a class="code" href="opacity_8cpp.html#a26e033ebfaf72894ebadbe8a4b0d85c9">opac</a>.<a class="code" href="structt__opac.html#ad41da16dc1a68d150949bd12bab88e6f">ipBrems</a>]*</div>
<div class="line"><a name="l00184"></a><span class="lineno"> 184</span>  (1. - <a class="code" href="rfield_8cpp.html#ae577590833d90679b27a7e2b237ee667">rfield</a>.<a class="code" href="structt__rfield.html#ac936125b75f9726c50fa0b11ccb6ea19">ContBoltz</a>[i]);</div>
<div class="line"><a name="l00185"></a><span class="lineno"> 185</span>  }</div>
<div class="line"><a name="l00186"></a><span class="lineno"> 186</span>  <span class="keywordflow">else</span></div>
<div class="line"><a name="l00187"></a><span class="lineno"> 187</span>  {</div>
<div class="line"><a name="l00188"></a><span class="lineno"> 188</span>  TotBremsAllIons[i] *= <a class="code" href="opacity_8cpp.html#a26e033ebfaf72894ebadbe8a4b0d85c9">opac</a>.<a class="code" href="structt__opac.html#a1fc82277384d5b9fc3f9bc7baef259b9">OpacStack</a>[i-1+<a class="code" href="opacity_8cpp.html#a26e033ebfaf72894ebadbe8a4b0d85c9">opac</a>.<a class="code" href="structt__opac.html#ad41da16dc1a68d150949bd12bab88e6f">ipBrems</a>]*</div>
<div class="line"><a name="l00189"></a><span class="lineno"> 189</span>  <a class="code" href="rfield_8cpp.html#ae577590833d90679b27a7e2b237ee667">rfield</a>.<a class="code" href="structt__rfield.html#ab80ba75cc614c2e11602c627ccb068a5">anu</a>[i]*<a class="code" href="physconst_8h.html#a0db3a0b9c80b92a0efc50282f0a813a0">TE1RYD</a>/<a class="code" href="phycon_8cpp.html#a58e7356b28193ac2b0ee8b08f06939ba">phycon</a>.<a class="code" href="structt__phycon.html#a38484680d6075e5c0ba33fab1e514fee">te</a>;</div>
<div class="line"><a name="l00190"></a><span class="lineno"> 190</span>  }</div>
<div class="line"><a name="l00191"></a><span class="lineno"> 191</span>  <a class="code" href="opacity_8cpp.html#a26e033ebfaf72894ebadbe8a4b0d85c9">opac</a>.<a class="code" href="structt__opac.html#ab8b4162939ba02ba2ad298f8e087107c">FreeFreeOpacity</a>[i] = TotBremsAllIons[i];</div>
<div class="line"><a name="l00192"></a><span class="lineno"> 192</span>  <span class="comment">/* >>chng 02 jul 23, from >0 to >=0, some models have no ionization,</span></div>
<div class="line"><a name="l00193"></a><span class="lineno"> 193</span> <span class="comment"> * like grainlte.in */</span></div>
<div class="line"><a name="l00194"></a><span class="lineno"> 194</span>  <span class="comment">/*ASSERT( (opac.FreeFreeOpacity[i] > 0.) || (dense.xIonDense[ipHYDROGEN][1] == 0.) );*/</span></div>
<div class="line"><a name="l00195"></a><span class="lineno"> 195</span>  <a class="code" href="opacity_8cpp.html#a26e033ebfaf72894ebadbe8a4b0d85c9">opac</a>.<a class="code" href="structt__opac.html#a7dd3774041d210c156a5734dc7b95ce7">opacity_abs</a>[i] += <a class="code" href="opacity_8cpp.html#a26e033ebfaf72894ebadbe8a4b0d85c9">opac</a>.<a class="code" href="structt__opac.html#ab8b4162939ba02ba2ad298f8e087107c">FreeFreeOpacity</a>[i];</div>
<div class="line"><a name="l00196"></a><span class="lineno"> 196</span>  }</div>
<div class="line"><a name="l00197"></a><span class="lineno"> 197</span> </div>
<div class="line"><a name="l00198"></a><span class="lineno"> 198</span> </div>
<div class="line"><a name="l00199"></a><span class="lineno"> 199</span>  <span class="comment">/* H minus absorption, with correction for stimulated emission */</span></div>
<div class="line"><a name="l00200"></a><span class="lineno"> 200</span>  <span class="keywordflow">if</span>( <a class="code" href="hmi_8cpp.html#a79a7316378697465da74ad5093bdb950">hmi</a>.<a class="code" href="structt__hmi.html#a81e13835fd7dab29ea45e9b42213f82a">hmidep</a> > <a class="code" href="cpu_8h.html#af1d998d79044c9644b48f8d5647d57b6">SMALLFLOAT</a> )</div>
<div class="line"><a name="l00201"></a><span class="lineno"> 201</span>  {</div>
<div class="line"><a name="l00202"></a><span class="lineno"> 202</span>  DepartCoefInv = 1./<a class="code" href="hmi_8cpp.html#a79a7316378697465da74ad5093bdb950">hmi</a>.<a class="code" href="structt__hmi.html#a81e13835fd7dab29ea45e9b42213f82a">hmidep</a>;</div>
<div class="line"><a name="l00203"></a><span class="lineno"> 203</span>  }</div>
<div class="line"><a name="l00204"></a><span class="lineno"> 204</span>  <span class="keywordflow">else</span></div>
<div class="line"><a name="l00205"></a><span class="lineno"> 205</span>  {</div>
<div class="line"><a name="l00206"></a><span class="lineno"> 206</span>  <span class="comment">/* the hmidep departure coef can become vastly small in totally</span></div>
<div class="line"><a name="l00207"></a><span class="lineno"> 207</span> <span class="comment"> * neutral gas (no electrons) */</span></div>
<div class="line"><a name="l00208"></a><span class="lineno"> 208</span>  DepartCoefInv = 1.;</div>
<div class="line"><a name="l00209"></a><span class="lineno"> 209</span>  }</div>
<div class="line"><a name="l00210"></a><span class="lineno"> 210</span> </div>
<div class="line"><a name="l00211"></a><span class="lineno"> 211</span>  limit = <a class="code" href="iso_8cpp.html#ab57c2051ee65e0236231a59103b5e80c">iso_sp</a>[<a class="code" href="iso_8h.html#a40dba8bba653792c64e61ce10683217f">ipHE_LIKE</a>][<a class="code" href="cddefines_8h.html#a998e102b7d6537d3ef5200647c4b8559">ipHELIUM</a>].<a class="code" href="classt__iso__sp.html#a49b0d99041ca89e13275cc33d326defd">fb</a>[0].ipIsoLevNIonCon;</div>
<div class="line"><a name="l00212"></a><span class="lineno"> 212</span>  <span class="keywordflow">if</span>(limit > <a class="code" href="rfield_8cpp.html#ae577590833d90679b27a7e2b237ee667">rfield</a>.<a class="code" href="structt__rfield.html#aa61dca00b142fadf1b2013c670c6184c">nflux</a>)</div>
<div class="line"><a name="l00213"></a><span class="lineno"> 213</span>  limit = <a class="code" href="rfield_8cpp.html#ae577590833d90679b27a7e2b237ee667">rfield</a>.<a class="code" href="structt__rfield.html#aa61dca00b142fadf1b2013c670c6184c">nflux</a>;</div>
<div class="line"><a name="l00214"></a><span class="lineno"> 214</span> </div>
<div class="line"><a name="l00215"></a><span class="lineno"> 215</span>  <span class="keyword">const</span> <a class="code" href="classmolezone.html">molezone</a> *MHm = <a class="code" href="mole_8h.html#aaa8c58e96a89149454224f87acefcf90">findspecieslocal</a>(<span class="stringliteral">"H-"</span>); </div>
<div class="line"><a name="l00216"></a><span class="lineno"> 216</span>  <span class="keywordflow">for</span>( i=<a class="code" href="hmi_8cpp.html#a79a7316378697465da74ad5093bdb950">hmi</a>.<a class="code" href="structt__hmi.html#aa3b0d4a7544a935bc96b228f277f9e8d">iphmin</a>-1; i < limit; i++ )</div>
<div class="line"><a name="l00217"></a><span class="lineno"> 217</span>  {</div>
<div class="line"><a name="l00218"></a><span class="lineno"> 218</span>  <span class="keywordtype">double</span> factor;</div>
<div class="line"><a name="l00219"></a><span class="lineno"> 219</span>  factor = 1. - <a class="code" href="rfield_8cpp.html#ae577590833d90679b27a7e2b237ee667">rfield</a>.<a class="code" href="structt__rfield.html#ac936125b75f9726c50fa0b11ccb6ea19">ContBoltz</a>[i]*DepartCoefInv;</div>
<div class="line"><a name="l00220"></a><span class="lineno"> 220</span>  <span class="keywordflow">if</span>(factor > 0)</div>
<div class="line"><a name="l00221"></a><span class="lineno"> 221</span>  <a class="code" href="opacity_8cpp.html#a26e033ebfaf72894ebadbe8a4b0d85c9">opac</a>.<a class="code" href="structt__opac.html#a7dd3774041d210c156a5734dc7b95ce7">opacity_abs</a>[i] += <a class="code" href="opacity_8cpp.html#a26e033ebfaf72894ebadbe8a4b0d85c9">opac</a>.<a class="code" href="structt__opac.html#a1fc82277384d5b9fc3f9bc7baef259b9">OpacStack</a>[i-<a class="code" href="hmi_8cpp.html#a79a7316378697465da74ad5093bdb950">hmi</a>.<a class="code" href="structt__hmi.html#aa3b0d4a7544a935bc96b228f277f9e8d">iphmin</a>+<a class="code" href="opacity_8cpp.html#a26e033ebfaf72894ebadbe8a4b0d85c9">opac</a>.<a class="code" href="structt__opac.html#a8fea432c23f0624ca935f7a7913ebf05">iphmop</a>]*</div>
<div class="line"><a name="l00222"></a><span class="lineno"> 222</span>  MHm-><a class="code" href="classmolezone.html#a49a86bc44599abacd2eb714471ca464d">den</a>*factor;</div>
<div class="line"><a name="l00223"></a><span class="lineno"> 223</span>  }</div>
<div class="line"><a name="l00224"></a><span class="lineno"> 224</span> </div>
<div class="line"><a name="l00225"></a><span class="lineno"> 225</span>  <span class="comment">/* H2P h2plus bound free opacity */</span></div>
<div class="line"><a name="l00226"></a><span class="lineno"> 226</span>  limit = <a class="code" href="opacity_8cpp.html#a26e033ebfaf72894ebadbe8a4b0d85c9">opac</a>.<a class="code" href="structt__opac.html#aae73709f2f5655524acd6e764141aae4">ih2pnt</a>[1]; </div>
<div class="line"><a name="l00227"></a><span class="lineno"> 227</span>  <span class="keywordflow">if</span>(limit > <a class="code" href="rfield_8cpp.html#ae577590833d90679b27a7e2b237ee667">rfield</a>.<a class="code" href="structt__rfield.html#aa61dca00b142fadf1b2013c670c6184c">nflux</a>)</div>
<div class="line"><a name="l00228"></a><span class="lineno"> 228</span>  limit = <a class="code" href="rfield_8cpp.html#ae577590833d90679b27a7e2b237ee667">rfield</a>.<a class="code" href="structt__rfield.html#aa61dca00b142fadf1b2013c670c6184c">nflux</a>;</div>
<div class="line"><a name="l00229"></a><span class="lineno"> 229</span>  <span class="keywordflow">for</span>( i=<a class="code" href="opacity_8cpp.html#a26e033ebfaf72894ebadbe8a4b0d85c9">opac</a>.<a class="code" href="structt__opac.html#aae73709f2f5655524acd6e764141aae4">ih2pnt</a>[0]-1; i < limit; i++ )</div>
<div class="line"><a name="l00230"></a><span class="lineno"> 230</span>  {</div>
<div class="line"><a name="l00231"></a><span class="lineno"> 231</span>  <a class="code" href="opacity_8cpp.html#a26e033ebfaf72894ebadbe8a4b0d85c9">opac</a>.<a class="code" href="structt__opac.html#a7dd3774041d210c156a5734dc7b95ce7">opacity_abs</a>[i] += MH2p-><a class="code" href="classmolezone.html#a49a86bc44599abacd2eb714471ca464d">den</a>*<a class="code" href="opacity_8cpp.html#a26e033ebfaf72894ebadbe8a4b0d85c9">opac</a>.<a class="code" href="structt__opac.html#a1fc82277384d5b9fc3f9bc7baef259b9">OpacStack</a>[i-<a class="code" href="opacity_8cpp.html#a26e033ebfaf72894ebadbe8a4b0d85c9">opac</a>.<a class="code" href="structt__opac.html#aae73709f2f5655524acd6e764141aae4">ih2pnt</a>[0]+</div>
<div class="line"><a name="l00232"></a><span class="lineno"> 232</span>  <a class="code" href="opacity_8cpp.html#a26e033ebfaf72894ebadbe8a4b0d85c9">opac</a>.<a class="code" href="structt__opac.html#a9c0e964e1d4b47f2b141a935bec0d31d">ih2pof</a>];</div>
<div class="line"><a name="l00233"></a><span class="lineno"> 233</span>  <a class="code" href="cddefines_8h.html#a092bd7bb2cb7fd9f483b6995cee61bc0">ASSERT</a>( !<a class="code" href="cddefines_8h.html#a075c8459d7e501109174c1a2fdc5cd7e">isnan</a>( <a class="code" href="opacity_8cpp.html#a26e033ebfaf72894ebadbe8a4b0d85c9">opac</a>.<a class="code" href="structt__opac.html#a7dd3774041d210c156a5734dc7b95ce7">opacity_abs</a>[i] ) );</div>
<div class="line"><a name="l00234"></a><span class="lineno"> 234</span>  }</div>
<div class="line"><a name="l00235"></a><span class="lineno"> 235</span> </div>
<div class="line"><a name="l00236"></a><span class="lineno"> 236</span>  <span class="comment">/* H2 continuum dissociation opacity */</span></div>
<div class="line"><a name="l00237"></a><span class="lineno"> 237</span>  <span class="keywordflow">for</span>( <a class="code" href="h2_8h.html#a476b56dd515f2d3617e28dc0bc6b2992">diatom_iter</a> diatom = <a class="code" href="h2_8cpp.html#acebab186cf3c20150eb67c5505c4433e">diatoms</a>.begin(); diatom != <a class="code" href="h2_8cpp.html#acebab186cf3c20150eb67c5505c4433e">diatoms</a>.end(); ++diatom )</div>
<div class="line"><a name="l00238"></a><span class="lineno"> 238</span>  {</div>
<div class="line"><a name="l00239"></a><span class="lineno"> 239</span>  <span class="keywordflow">if</span>( (*diatom)->lgEnabled && <a class="code" href="mole_8cpp.html#a31d5a7dde43a2027f9257ef2d3577556">mole_global</a>.<a class="code" href="classt__mole__global.html#aa389984a72137427404a01d109811516">lgStancil</a> )</div>
<div class="line"><a name="l00240"></a><span class="lineno"> 240</span>  {</div>
<div class="line"><a name="l00241"></a><span class="lineno"> 241</span>  <span class="keywordflow">for</span>( vector< diss_tran >::iterator tran = (*diatom)->Diss_Trans.begin(); tran != (*diatom)->Diss_Trans.end(); ++tran )</div>
<div class="line"><a name="l00242"></a><span class="lineno"> 242</span>  {</div>
<div class="line"><a name="l00243"></a><span class="lineno"> 243</span>  <span class="keywordtype">long</span> lower_limit = <a class="code" href="cont__ipoint_8cpp.html#a5aa9a7bebc355f0cbceb7b411280d6dd">ipoint</a>(tran->energies[0]);</div>
<div class="line"><a name="l00244"></a><span class="lineno"> 244</span>  <span class="keywordtype">long</span> upper_limit = <a class="code" href="cont__ipoint_8cpp.html#a5aa9a7bebc355f0cbceb7b411280d6dd">ipoint</a>(tran->energies.back());</div>
<div class="line"><a name="l00245"></a><span class="lineno"> 245</span>  upper_limit = <a class="code" href="cddefines_8h.html#a393053491edc087c17e89d597b6e16f5">MIN2</a>( upper_limit, <a class="code" href="rfield_8cpp.html#ae577590833d90679b27a7e2b237ee667">rfield</a>.<a class="code" href="structt__rfield.html#aa61dca00b142fadf1b2013c670c6184c">nflux</a>-1 );</div>
<div class="line"><a name="l00246"></a><span class="lineno"> 246</span>  <span class="keywordflow">for</span>(i = lower_limit; i <= upper_limit; ++i)</div>
<div class="line"><a name="l00247"></a><span class="lineno"> 247</span>  {</div>
<div class="line"><a name="l00248"></a><span class="lineno"> 248</span>  <a class="code" href="opacity_8cpp.html#a26e033ebfaf72894ebadbe8a4b0d85c9">opac</a>.<a class="code" href="structt__opac.html#a7dd3774041d210c156a5734dc7b95ce7">opacity_abs</a>[i] += (*diatom)->MolDissocOpacity( *tran, <a class="code" href="rfield_8cpp.html#ae577590833d90679b27a7e2b237ee667">rfield</a>.<a class="code" href="structt__rfield.html#ab80ba75cc614c2e11602c627ccb068a5">anu</a>[i]);</div>
<div class="line"><a name="l00249"></a><span class="lineno"> 249</span>  }</div>
<div class="line"><a name="l00250"></a><span class="lineno"> 250</span>  }</div>
<div class="line"><a name="l00251"></a><span class="lineno"> 251</span>  }</div>
<div class="line"><a name="l00252"></a><span class="lineno"> 252</span>  }</div>
<div class="line"><a name="l00253"></a><span class="lineno"> 253</span> </div>
<div class="line"><a name="l00254"></a><span class="lineno"> 254</span>  <span class="comment">/* get total population of hydrogen ground to do Rayleigh scattering */</span></div>
<div class="line"><a name="l00255"></a><span class="lineno"> 255</span>  <span class="keywordflow">if</span>( <a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a9f73720f209b1536b1d32300b52a9845">xIonDense</a>[<a class="code" href="cddefines_8h.html#ad230dc2b848c4445597e35b10e37bb74">ipHYDROGEN</a>][1] <= 0. )</div>
<div class="line"><a name="l00256"></a><span class="lineno"> 256</span>  {</div>
<div class="line"><a name="l00257"></a><span class="lineno"> 257</span>  fac = <a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a9f73720f209b1536b1d32300b52a9845">xIonDense</a>[<a class="code" href="cddefines_8h.html#ad230dc2b848c4445597e35b10e37bb74">ipHYDROGEN</a>][0];</div>
<div class="line"><a name="l00258"></a><span class="lineno"> 258</span>  }</div>
<div class="line"><a name="l00259"></a><span class="lineno"> 259</span>  <span class="keywordflow">else</span></div>
<div class="line"><a name="l00260"></a><span class="lineno"> 260</span>  {</div>
<div class="line"><a name="l00261"></a><span class="lineno"> 261</span>  fac = <a class="code" href="iso_8cpp.html#ab57c2051ee65e0236231a59103b5e80c">iso_sp</a>[<a class="code" href="iso_8h.html#ac9adcc2e25a84dbcfaf67a9753504f29">ipH_LIKE</a>][<a class="code" href="cddefines_8h.html#ad230dc2b848c4445597e35b10e37bb74">ipHYDROGEN</a>].<a class="code" href="classt__iso__sp.html#abed262ca9c3408aadb4a4e3e0c902172">st</a>[<a class="code" href="iso_8h.html#a1c4a2ccd8a77c449fcf2ec2eb4561c22">ipH1s</a>].Pop();</div>
<div class="line"><a name="l00262"></a><span class="lineno"> 262</span>  }</div>
<div class="line"><a name="l00263"></a><span class="lineno"> 263</span> </div>
<div class="line"><a name="l00264"></a><span class="lineno"> 264</span>  <span class="comment">/* Ly a damp wing opac (Rayleigh scattering) */</span></div>
<div class="line"><a name="l00265"></a><span class="lineno"> 265</span>  limit = <a class="code" href="iso_8cpp.html#ab57c2051ee65e0236231a59103b5e80c">iso_sp</a>[<a class="code" href="iso_8h.html#ac9adcc2e25a84dbcfaf67a9753504f29">ipH_LIKE</a>][<a class="code" href="cddefines_8h.html#ad230dc2b848c4445597e35b10e37bb74">ipHYDROGEN</a>].<a class="code" href="classt__iso__sp.html#a49b0d99041ca89e13275cc33d326defd">fb</a>[<a class="code" href="iso_8h.html#a1c4a2ccd8a77c449fcf2ec2eb4561c22">ipH1s</a>].ipIsoLevNIonCon;</div>
<div class="line"><a name="l00266"></a><span class="lineno"> 266</span>  <span class="keywordflow">if</span>(limit > <a class="code" href="rfield_8cpp.html#ae577590833d90679b27a7e2b237ee667">rfield</a>.<a class="code" href="structt__rfield.html#aa61dca00b142fadf1b2013c670c6184c">nflux</a>)</div>
<div class="line"><a name="l00267"></a><span class="lineno"> 267</span>  limit = <a class="code" href="rfield_8cpp.html#ae577590833d90679b27a7e2b237ee667">rfield</a>.<a class="code" href="structt__rfield.html#aa61dca00b142fadf1b2013c670c6184c">nflux</a>;</div>
<div class="line"><a name="l00268"></a><span class="lineno"> 268</span>  <span class="keywordflow">for</span>( i=0; i < limit; i++ )</div>
<div class="line"><a name="l00269"></a><span class="lineno"> 269</span>  {</div>
<div class="line"><a name="l00270"></a><span class="lineno"> 270</span>  <a class="code" href="opacity_8cpp.html#a26e033ebfaf72894ebadbe8a4b0d85c9">opac</a>.<a class="code" href="structt__opac.html#a664caf74d574f41ddcb953f008803b80">opacity_sct</a>[i] += (fac*<a class="code" href="opacity_8cpp.html#a26e033ebfaf72894ebadbe8a4b0d85c9">opac</a>.<a class="code" href="structt__opac.html#a1fc82277384d5b9fc3f9bc7baef259b9">OpacStack</a>[i-1+<a class="code" href="opacity_8cpp.html#a26e033ebfaf72894ebadbe8a4b0d85c9">opac</a>.<a class="code" href="structt__opac.html#a03b998153c6a5789c90c42b949bfe16a">ipRayScat</a>]);</div>
<div class="line"><a name="l00271"></a><span class="lineno"> 271</span>  }</div>
<div class="line"><a name="l00272"></a><span class="lineno"> 272</span> </div>
<div class="line"><a name="l00273"></a><span class="lineno"> 273</span>  <span class="comment">/* remember largest correction for stimulated emission */</span></div>
<div class="line"><a name="l00274"></a><span class="lineno"> 274</span>  <span class="keywordflow">if</span>( <a class="code" href="iso_8cpp.html#ab57c2051ee65e0236231a59103b5e80c">iso_sp</a>[<a class="code" href="iso_8h.html#ac9adcc2e25a84dbcfaf67a9753504f29">ipH_LIKE</a>][<a class="code" href="cddefines_8h.html#ad230dc2b848c4445597e35b10e37bb74">ipHYDROGEN</a>].fb[<a class="code" href="iso_8h.html#a1c4a2ccd8a77c449fcf2ec2eb4561c22">ipH1s</a>].DepartCoef > 1e-30 && !<a class="code" href="conv_8cpp.html#a02aae728cb00079244fd6d41fefdc959">conv</a>.<a class="code" href="structt__conv.html#af927d37582560e64e2a55704f18aab0b">lgSearch</a> )</div>
<div class="line"><a name="l00275"></a><span class="lineno"> 275</span>  {</div>
<div class="line"><a name="l00276"></a><span class="lineno"> 276</span>  <a class="code" href="cddefines_8h.html#a9aeda5ccf905f7d5241c0fe35434c820">realnum</a> factor;</div>
<div class="line"><a name="l00277"></a><span class="lineno"> 277</span>  factor = (<a class="code" href="cddefines_8h.html#a9aeda5ccf905f7d5241c0fe35434c820">realnum</a>)(<a class="code" href="rfield_8cpp.html#ae577590833d90679b27a7e2b237ee667">rfield</a>.<a class="code" href="structt__rfield.html#ac936125b75f9726c50fa0b11ccb6ea19">ContBoltz</a>[<a class="code" href="iso_8cpp.html#ab57c2051ee65e0236231a59103b5e80c">iso_sp</a>[<a class="code" href="iso_8h.html#ac9adcc2e25a84dbcfaf67a9753504f29">ipH_LIKE</a>][<a class="code" href="cddefines_8h.html#ad230dc2b848c4445597e35b10e37bb74">ipHYDROGEN</a>].<a class="code" href="classt__iso__sp.html#a49b0d99041ca89e13275cc33d326defd">fb</a>[<a class="code" href="iso_8h.html#a1c4a2ccd8a77c449fcf2ec2eb4561c22">ipH1s</a>].ipIsoLevNIonCon-1]/<a class="code" href="iso_8cpp.html#ab57c2051ee65e0236231a59103b5e80c">iso_sp</a>[<a class="code" href="iso_8h.html#ac9adcc2e25a84dbcfaf67a9753504f29">ipH_LIKE</a>][<a class="code" href="cddefines_8h.html#ad230dc2b848c4445597e35b10e37bb74">ipHYDROGEN</a>].<a class="code" href="classt__iso__sp.html#a49b0d99041ca89e13275cc33d326defd">fb</a>[<a class="code" href="iso_8h.html#a1c4a2ccd8a77c449fcf2ec2eb4561c22">ipH1s</a>].DepartCoef);</div>
<div class="line"><a name="l00278"></a><span class="lineno"> 278</span>  <span class="keywordflow">if</span>(<a class="code" href="opacity_8cpp.html#a26e033ebfaf72894ebadbe8a4b0d85c9">opac</a>.<a class="code" href="structt__opac.html#a904de84993988ee5b8b4df0d9077a1b8">stimax</a>[0] < factor)</div>
<div class="line"><a name="l00279"></a><span class="lineno"> 279</span>  <a class="code" href="opacity_8cpp.html#a26e033ebfaf72894ebadbe8a4b0d85c9">opac</a>.<a class="code" href="structt__opac.html#a904de84993988ee5b8b4df0d9077a1b8">stimax</a>[0] = factor;</div>
<div class="line"><a name="l00280"></a><span class="lineno"> 280</span>  }</div>
<div class="line"><a name="l00281"></a><span class="lineno"> 281</span> </div>
<div class="line"><a name="l00282"></a><span class="lineno"> 282</span>  <span class="keywordflow">if</span>( <a class="code" href="iso_8cpp.html#ab57c2051ee65e0236231a59103b5e80c">iso_sp</a>[<a class="code" href="iso_8h.html#ac9adcc2e25a84dbcfaf67a9753504f29">ipH_LIKE</a>][<a class="code" href="cddefines_8h.html#ad230dc2b848c4445597e35b10e37bb74">ipHYDROGEN</a>].fb[<a class="code" href="iso_8h.html#a63acd79d87d47a44d38d8cc1b4239c48">ipH2p</a>].DepartCoef > 1e-30 && !<a class="code" href="conv_8cpp.html#a02aae728cb00079244fd6d41fefdc959">conv</a>.<a class="code" href="structt__conv.html#af927d37582560e64e2a55704f18aab0b">lgSearch</a> )</div>
<div class="line"><a name="l00283"></a><span class="lineno"> 283</span>  {</div>
<div class="line"><a name="l00284"></a><span class="lineno"> 284</span>  <a class="code" href="cddefines_8h.html#a9aeda5ccf905f7d5241c0fe35434c820">realnum</a> factor;</div>
<div class="line"><a name="l00285"></a><span class="lineno"> 285</span>  factor = (<a class="code" href="cddefines_8h.html#a9aeda5ccf905f7d5241c0fe35434c820">realnum</a>)(<a class="code" href="rfield_8cpp.html#ae577590833d90679b27a7e2b237ee667">rfield</a>.<a class="code" href="structt__rfield.html#ac936125b75f9726c50fa0b11ccb6ea19">ContBoltz</a>[<a class="code" href="iso_8cpp.html#ab57c2051ee65e0236231a59103b5e80c">iso_sp</a>[<a class="code" href="iso_8h.html#ac9adcc2e25a84dbcfaf67a9753504f29">ipH_LIKE</a>][<a class="code" href="cddefines_8h.html#ad230dc2b848c4445597e35b10e37bb74">ipHYDROGEN</a>].<a class="code" href="classt__iso__sp.html#a49b0d99041ca89e13275cc33d326defd">fb</a>[<a class="code" href="iso_8h.html#a63acd79d87d47a44d38d8cc1b4239c48">ipH2p</a>].ipIsoLevNIonCon-1]/<a class="code" href="iso_8cpp.html#ab57c2051ee65e0236231a59103b5e80c">iso_sp</a>[<a class="code" href="iso_8h.html#ac9adcc2e25a84dbcfaf67a9753504f29">ipH_LIKE</a>][<a class="code" href="cddefines_8h.html#ad230dc2b848c4445597e35b10e37bb74">ipHYDROGEN</a>].<a class="code" href="classt__iso__sp.html#a49b0d99041ca89e13275cc33d326defd">fb</a>[<a class="code" href="iso_8h.html#a63acd79d87d47a44d38d8cc1b4239c48">ipH2p</a>].DepartCoef);</div>
<div class="line"><a name="l00286"></a><span class="lineno"> 286</span>  <span class="keywordflow">if</span>(<a class="code" href="opacity_8cpp.html#a26e033ebfaf72894ebadbe8a4b0d85c9">opac</a>.<a class="code" href="structt__opac.html#a904de84993988ee5b8b4df0d9077a1b8">stimax</a>[1] < factor)</div>
<div class="line"><a name="l00287"></a><span class="lineno"> 287</span>  <a class="code" href="opacity_8cpp.html#a26e033ebfaf72894ebadbe8a4b0d85c9">opac</a>.<a class="code" href="structt__opac.html#a904de84993988ee5b8b4df0d9077a1b8">stimax</a>[1] = factor;</div>
<div class="line"><a name="l00288"></a><span class="lineno"> 288</span>  }</div>
<div class="line"><a name="l00289"></a><span class="lineno"> 289</span> </div>
<div class="line"><a name="l00290"></a><span class="lineno"> 290</span> <span class="preprocessor"># if 0</span></div>
<div class="line"><a name="l00291"></a><span class="lineno"> 291</span> <span class="preprocessor"></span> <span class="comment">/* check whether hydrogen or Helium singlets mased, if not in search mode */</span></div>
<div class="line"><a name="l00292"></a><span class="lineno"> 292</span>  <span class="keywordflow">if</span>( !<a class="code" href="conv_8cpp.html#a02aae728cb00079244fd6d41fefdc959">conv</a>.<a class="code" href="structt__conv.html#af927d37582560e64e2a55704f18aab0b">lgSearch</a> )</div>
<div class="line"><a name="l00293"></a><span class="lineno"> 293</span>  {</div>
<div class="line"><a name="l00294"></a><span class="lineno"> 294</span>  <span class="keywordflow">if</span>( <a class="code" href="iso_8cpp.html#ab57c2051ee65e0236231a59103b5e80c">iso_sp</a>[<a class="code" href="iso_8h.html#ac9adcc2e25a84dbcfaf67a9753504f29">ipH_LIKE</a>][<a class="code" href="cddefines_8h.html#ad230dc2b848c4445597e35b10e37bb74">ipHYDROGEN</a>].trans(<a class="code" href="iso_8h.html#a63acd79d87d47a44d38d8cc1b4239c48">ipH2p</a>,<a class="code" href="iso_8h.html#a1c4a2ccd8a77c449fcf2ec2eb4561c22">ipH1s</a>).PopOpc() < 0. )</div>
<div class="line"><a name="l00295"></a><span class="lineno"> 295</span>  {</div>
<div class="line"><a name="l00296"></a><span class="lineno"> 296</span>  <a class="code" href="hydrogenic_8cpp.html#a6d5e2db5bdac5086ba42a060287d6b5e">hydro</a>.lgHLyaMased = <span class="keyword">true</span>;</div>
<div class="line"><a name="l00297"></a><span class="lineno"> 297</span>  }</div>
<div class="line"><a name="l00298"></a><span class="lineno"> 298</span>  }</div>
<div class="line"><a name="l00299"></a><span class="lineno"> 299</span> <span class="preprocessor"># endif</span></div>
<div class="line"><a name="l00300"></a><span class="lineno"> 300</span> <span class="preprocessor"></span></div>
<div class="line"><a name="l00301"></a><span class="lineno"> 301</span>  <span class="comment">/* >>chng 05 nov 25, use Yan et al. H2 photo cs</span></div>
<div class="line"><a name="l00302"></a><span class="lineno"> 302</span> <span class="comment"> * following reference gives cross section for all energies</span></div>
<div class="line"><a name="l00303"></a><span class="lineno"> 303</span> <span class="comment"> * >>refer H2 photo cs Yan, M., Sadeghpour, H.R., & Dalgarno, A., 1998, ApJ, 496, 1044 </span></div>
<div class="line"><a name="l00304"></a><span class="lineno"> 304</span> <span class="comment"> * Wilms, J., Allen, A., & McCray, R. 2000, ApJ, 542, 914 */</span></div>
<div class="line"><a name="l00305"></a><span class="lineno"> 305</span>  <span class="comment">/* >>chng 02 jan 16, approximate inclusion of H_2 photoelectric opacity </span></div>
<div class="line"><a name="l00306"></a><span class="lineno"> 306</span> <span class="comment"> * include H_2 in total photoelectric opacity as twice H0 cs */</span></div>
<div class="line"><a name="l00307"></a><span class="lineno"> 307</span>  <span class="comment">/* set lower and upper limits to this range */</span></div>
<div class="line"><a name="l00308"></a><span class="lineno"> 308</span>  <span class="comment">/*>>KEYWORD H2 photoionization opacity */</span></div>
<div class="line"><a name="l00309"></a><span class="lineno"> 309</span>  low = <a class="code" href="h2_8cpp.html#abdb9830c1e377d61cfc1cf1f73169ffe">h2</a>.<a class="code" href="classdiatomics.html#abb8b2b1314fed846f0368e8f2135a138">ip_photo_opac_thresh</a>;</div>
<div class="line"><a name="l00310"></a><span class="lineno"> 310</span>  ipHi = <a class="code" href="rfield_8cpp.html#ae577590833d90679b27a7e2b237ee667">rfield</a>.<a class="code" href="structt__rfield.html#a57a59f4332c3c102a7b5bb7daad314f8">nupper</a>;</div>
<div class="line"><a name="l00311"></a><span class="lineno"> 311</span>  ipop = <a class="code" href="h2_8cpp.html#abdb9830c1e377d61cfc1cf1f73169ffe">h2</a>.<a class="code" href="classdiatomics.html#a287f3b9f271bb04b66d84506daca29ab">ip_photo_opac_offset</a>;</div>
<div class="line"><a name="l00312"></a><span class="lineno"> 312</span>  <span class="comment">/* OpacityAdd1Subshell just returns for static opacities if opac.lgRedoStatic not set*/</span></div>
<div class="line"><a name="l00313"></a><span class="lineno"> 313</span>  <span class="comment">/* >>chng 05 nov 27, change on nov 25 had left 2*density from H0, so</span></div>
<div class="line"><a name="l00314"></a><span class="lineno"> 314</span> <span class="comment"> * twice the H2 density was used - * also changed to static opacity </span></div>
<div class="line"><a name="l00315"></a><span class="lineno"> 315</span> <span class="comment"> * this assumes that all v,J levels contribute the same opacity */</span></div>
<div class="line"><a name="l00316"></a><span class="lineno"> 316</span>  <a class="code" href="opacity_8h.html#ad23d4cd39b5a583c0fcb2f84dba06671">OpacityAdd1Subshell</a>( ipop , low , ipHi , <a class="code" href="hmi_8cpp.html#a79a7316378697465da74ad5093bdb950">hmi</a>.<a class="code" href="structt__hmi.html#a779920c75e30c622fc3924c51148bae2">H2_total</a> , <span class="charliteral">'s'</span> );</div>
<div class="line"><a name="l00317"></a><span class="lineno"> 317</span> </div>
<div class="line"><a name="l00318"></a><span class="lineno"> 318</span>  <span class="comment">/*>>KEYWORD CO photoionization opacity */</span></div>
<div class="line"><a name="l00319"></a><span class="lineno"> 319</span>  <span class="comment">/* include photoionization of CO - assume C and O in CO each have </span></div>
<div class="line"><a name="l00320"></a><span class="lineno"> 320</span> <span class="comment"> * same photo cs as atom - this should only be significant in highly</span></div>
<div class="line"><a name="l00321"></a><span class="lineno"> 321</span> <span class="comment"> * shielded regions where only very hard photons penetrate </span></div>
<div class="line"><a name="l00322"></a><span class="lineno"> 322</span> <span class="comment"> * also H2O condensed onto grain surfaces - very important deep in cloud */</span></div>
<div class="line"><a name="l00323"></a><span class="lineno"> 323</span>  SaveOxygen1 = <a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a9f73720f209b1536b1d32300b52a9845">xIonDense</a>[<a class="code" href="cddefines_8h.html#a395d4c16b35561b0c4805467a7d9f605">ipOXYGEN</a>][0];</div>
<div class="line"><a name="l00324"></a><span class="lineno"> 324</span>  SaveCarbon1 = <a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a9f73720f209b1536b1d32300b52a9845">xIonDense</a>[<a class="code" href="cddefines_8h.html#a3103755d21f14edff23629e64424dcfa">ipCARBON</a>][0];</div>
<div class="line"><a name="l00325"></a><span class="lineno"> 325</span>  <span class="comment">/* atomic C and O will include CO during the heating sum loop */</span></div>
<div class="line"><a name="l00326"></a><span class="lineno"> 326</span>  <a class="code" href="cddefines_8h.html#af99f8430a8e7473900be47771ebf7ae8">fixit</a>(); <span class="comment">/* This breaks the invariant for total mass.</span></div>
<div class="line"><a name="l00327"></a><span class="lineno"> 327</span> <span class="comment"> *</span></div>
<div class="line"><a name="l00328"></a><span class="lineno"> 328</span> <span class="comment"> * In any case, is CO the only species which contributes?</span></div>
<div class="line"><a name="l00329"></a><span class="lineno"> 329</span> <span class="comment"> * -- might expect all other molecular species to do so,</span></div>
<div class="line"><a name="l00330"></a><span class="lineno"> 330</span> <span class="comment"> * i.e. the item added should perhaps be</span></div>
<div class="line"><a name="l00331"></a><span class="lineno"> 331</span> <span class="comment"> * dense.xMolecules[nelem]) -- code duplicated in heatsum</span></div>
<div class="line"><a name="l00332"></a><span class="lineno"> 332</span> <span class="comment"> */</span></div>
<div class="line"><a name="l00333"></a><span class="lineno"> 333</span>  <a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a9f73720f209b1536b1d32300b52a9845">xIonDense</a>[<a class="code" href="cddefines_8h.html#a395d4c16b35561b0c4805467a7d9f605">ipOXYGEN</a>][0] += (<a class="code" href="cddefines_8h.html#a9aeda5ccf905f7d5241c0fe35434c820">realnum</a>) (<a class="code" href="mole_8h.html#aaa8c58e96a89149454224f87acefcf90">findspecieslocal</a>(<span class="stringliteral">"CO"</span>)-><a class="code" href="classmolezone.html#a49a86bc44599abacd2eb714471ca464d">den</a> + <a class="code" href="mole_8h.html#aaa8c58e96a89149454224f87acefcf90">findspecieslocal</a>(<span class="stringliteral">"H2Ogrn"</span>)-><a class="code" href="classmolezone.html#a49a86bc44599abacd2eb714471ca464d">den</a>);</div>
<div class="line"><a name="l00334"></a><span class="lineno"> 334</span>  <a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a9f73720f209b1536b1d32300b52a9845">xIonDense</a>[<a class="code" href="cddefines_8h.html#a3103755d21f14edff23629e64424dcfa">ipCARBON</a>][0] += (<a class="code" href="cddefines_8h.html#a9aeda5ccf905f7d5241c0fe35434c820">realnum</a>) (<a class="code" href="mole_8h.html#aaa8c58e96a89149454224f87acefcf90">findspecieslocal</a>(<span class="stringliteral">"CO"</span>)-><a class="code" href="classmolezone.html#a49a86bc44599abacd2eb714471ca464d">den</a>);</div>
<div class="line"><a name="l00335"></a><span class="lineno"> 335</span> </div>
<div class="line"><a name="l00336"></a><span class="lineno"> 336</span>  <span class="comment">/* following loop adds standard opacities for first 30 elements </span></div>
<div class="line"><a name="l00337"></a><span class="lineno"> 337</span> <span class="comment"> * most heavy element opacity added here */</span></div>
<div class="line"><a name="l00338"></a><span class="lineno"> 338</span>  <span class="keywordflow">for</span>( nelem=<a class="code" href="cddefines_8h.html#ad230dc2b848c4445597e35b10e37bb74">ipHYDROGEN</a>; nelem < <a class="code" href="cddefines_8h.html#a625741fe64429312469751842aab8216">LIMELM</a>; nelem++ )</div>
<div class="line"><a name="l00339"></a><span class="lineno"> 339</span>  {</div>
<div class="line"><a name="l00340"></a><span class="lineno"> 340</span>  <span class="comment">/* this element may be turned off */</span></div>
<div class="line"><a name="l00341"></a><span class="lineno"> 341</span>  <span class="keywordflow">if</span>( <a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a25e609b78edbf673f25bc6b68a1c7af1">lgElmtOn</a>[nelem] )</div>
<div class="line"><a name="l00342"></a><span class="lineno"> 342</span>  { </div>
<div class="line"><a name="l00343"></a><span class="lineno"> 343</span>  <a class="code" href="opacity_8h.html#ab7e78d694a0ada3e9a7dad5b6d553359">OpacityAdd1Element</a>(nelem);</div>
<div class="line"><a name="l00344"></a><span class="lineno"> 344</span>  }</div>
<div class="line"><a name="l00345"></a><span class="lineno"> 345</span>  }</div>
<div class="line"><a name="l00346"></a><span class="lineno"> 346</span> </div>
<div class="line"><a name="l00347"></a><span class="lineno"> 347</span>  <span class="comment">/* now reset the abundances */</span></div>
<div class="line"><a name="l00348"></a><span class="lineno"> 348</span>  <a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a9f73720f209b1536b1d32300b52a9845">xIonDense</a>[<a class="code" href="cddefines_8h.html#a395d4c16b35561b0c4805467a7d9f605">ipOXYGEN</a>][0] = SaveOxygen1;</div>
<div class="line"><a name="l00349"></a><span class="lineno"> 349</span>  <a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a9f73720f209b1536b1d32300b52a9845">xIonDense</a>[<a class="code" href="cddefines_8h.html#a3103755d21f14edff23629e64424dcfa">ipCARBON</a>][0] = SaveCarbon1;</div>
<div class="line"><a name="l00350"></a><span class="lineno"> 350</span> </div>
<div class="line"><a name="l00351"></a><span class="lineno"> 351</span>  <span class="comment">/* following are opacities due to specific excited levels */</span></div>
<div class="line"><a name="l00352"></a><span class="lineno"> 352</span> </div>
<div class="line"><a name="l00353"></a><span class="lineno"> 353</span>  <span class="comment">/* nitrogen opacity</span></div>
<div class="line"><a name="l00354"></a><span class="lineno"> 354</span> <span class="comment"> * excited level of N+ */</span></div>
<div class="line"><a name="l00355"></a><span class="lineno"> 355</span>  <a class="code" href="opacity_8h.html#ad23d4cd39b5a583c0fcb2f84dba06671">OpacityAdd1Subshell</a>(<a class="code" href="opacity_8cpp.html#a26e033ebfaf72894ebadbe8a4b0d85c9">opac</a>.<a class="code" href="structt__opac.html#addee82e65d31cb4f6517422d05b7b5ac">in1</a>[2],<a class="code" href="opacity_8cpp.html#a26e033ebfaf72894ebadbe8a4b0d85c9">opac</a>.<a class="code" href="structt__opac.html#addee82e65d31cb4f6517422d05b7b5ac">in1</a>[0],<a class="code" href="opacity_8cpp.html#a26e033ebfaf72894ebadbe8a4b0d85c9">opac</a>.<a class="code" href="structt__opac.html#addee82e65d31cb4f6517422d05b7b5ac">in1</a>[1],</div>
<div class="line"><a name="l00356"></a><span class="lineno"> 356</span>  <a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a9f73720f209b1536b1d32300b52a9845">xIonDense</a>[<a class="code" href="cddefines_8h.html#a20d695fc47a08766dbf4bd20c138a9f5">ipNITROGEN</a>][0]*<a class="code" href="atoms_8cpp.html#a7eb6de657f28e8be348c77a33a59e768">atoms</a>.<a class="code" href="structt__atoms.html#a3a9a3924617b4a8a9fbf69653aeb8f4a">p2nit</a> , <span class="charliteral">'v'</span> );</div>
<div class="line"><a name="l00357"></a><span class="lineno"> 357</span> </div>
<div class="line"><a name="l00358"></a><span class="lineno"> 358</span>  <span class="comment">/* oxygen opacity</span></div>
<div class="line"><a name="l00359"></a><span class="lineno"> 359</span> <span class="comment"> * excited level of Oo */</span></div>
<div class="line"><a name="l00360"></a><span class="lineno"> 360</span>  <a class="code" href="opacity_8h.html#ad23d4cd39b5a583c0fcb2f84dba06671">OpacityAdd1Subshell</a>(<a class="code" href="opacity_8cpp.html#a26e033ebfaf72894ebadbe8a4b0d85c9">opac</a>.<a class="code" href="structt__opac.html#a73439483830c8a5f4050efc6a38f883f">ipo1exc</a>[2],<a class="code" href="opacity_8cpp.html#a26e033ebfaf72894ebadbe8a4b0d85c9">opac</a>.<a class="code" href="structt__opac.html#a73439483830c8a5f4050efc6a38f883f">ipo1exc</a>[0],<a class="code" href="opacity_8cpp.html#a26e033ebfaf72894ebadbe8a4b0d85c9">opac</a>.<a class="code" href="structt__opac.html#a73439483830c8a5f4050efc6a38f883f">ipo1exc</a>[1],</div>
<div class="line"><a name="l00361"></a><span class="lineno"> 361</span>  <a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a9f73720f209b1536b1d32300b52a9845">xIonDense</a>[<a class="code" href="cddefines_8h.html#a395d4c16b35561b0c4805467a7d9f605">ipOXYGEN</a>][0]*<a class="code" href="oxy_8cpp.html#a75e93f94e63545b5d0800a5ec8d7eec1">oxy</a>.<a class="code" href="structt__oxy.html#ae66deb31745f8821d23aa18b6b69b578">poiexc</a>,<span class="charliteral">'v'</span>);</div>
<div class="line"><a name="l00362"></a><span class="lineno"> 362</span> </div>
<div class="line"><a name="l00363"></a><span class="lineno"> 363</span>  <span class="comment">/* O2+ excited states */</span></div>
<div class="line"><a name="l00364"></a><span class="lineno"> 364</span>  <a class="code" href="opacity_8h.html#ad23d4cd39b5a583c0fcb2f84dba06671">OpacityAdd1Subshell</a>(<a class="code" href="opacity_8cpp.html#a26e033ebfaf72894ebadbe8a4b0d85c9">opac</a>.<a class="code" href="structt__opac.html#a5b63b5ec71b5c4d7e71295967536af65">ipo3exc</a>[2],<a class="code" href="opacity_8cpp.html#a26e033ebfaf72894ebadbe8a4b0d85c9">opac</a>.<a class="code" href="structt__opac.html#a5b63b5ec71b5c4d7e71295967536af65">ipo3exc</a>[0],<a class="code" href="opacity_8cpp.html#a26e033ebfaf72894ebadbe8a4b0d85c9">opac</a>.<a class="code" href="structt__opac.html#a5b63b5ec71b5c4d7e71295967536af65">ipo3exc</a>[1],</div>
<div class="line"><a name="l00365"></a><span class="lineno"> 365</span>  <a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a9f73720f209b1536b1d32300b52a9845">xIonDense</a>[<a class="code" href="cddefines_8h.html#a395d4c16b35561b0c4805467a7d9f605">ipOXYGEN</a>][2]*<a class="code" href="oxy_8cpp.html#a75e93f94e63545b5d0800a5ec8d7eec1">oxy</a>.<a class="code" href="structt__oxy.html#a748a384900878a63dab24920dfbea2f4">poiii2</a>,<span class="charliteral">'v'</span>);</div>
<div class="line"><a name="l00366"></a><span class="lineno"> 366</span> </div>
<div class="line"><a name="l00367"></a><span class="lineno"> 367</span>  <a class="code" href="opacity_8h.html#ad23d4cd39b5a583c0fcb2f84dba06671">OpacityAdd1Subshell</a>(<a class="code" href="opacity_8cpp.html#a26e033ebfaf72894ebadbe8a4b0d85c9">opac</a>.<a class="code" href="structt__opac.html#a1a906a676ec79e3fdf22d80f1f81747b">ipo3exc3</a>[2],<a class="code" href="opacity_8cpp.html#a26e033ebfaf72894ebadbe8a4b0d85c9">opac</a>.<a class="code" href="structt__opac.html#a1a906a676ec79e3fdf22d80f1f81747b">ipo3exc3</a>[0],<a class="code" href="opacity_8cpp.html#a26e033ebfaf72894ebadbe8a4b0d85c9">opac</a>.<a class="code" href="structt__opac.html#a1a906a676ec79e3fdf22d80f1f81747b">ipo3exc3</a>[1],</div>
<div class="line"><a name="l00368"></a><span class="lineno"> 368</span>  <a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a9f73720f209b1536b1d32300b52a9845">xIonDense</a>[<a class="code" href="cddefines_8h.html#a395d4c16b35561b0c4805467a7d9f605">ipOXYGEN</a>][2]*<a class="code" href="oxy_8cpp.html#a75e93f94e63545b5d0800a5ec8d7eec1">oxy</a>.<a class="code" href="structt__oxy.html#a47365b83c8d69ab795285b6942375791">poiii3</a>,<span class="charliteral">'v'</span>);</div>
<div class="line"><a name="l00369"></a><span class="lineno"> 369</span> </div>
<div class="line"><a name="l00370"></a><span class="lineno"> 370</span>  <span class="comment">/* magnesium opacity</span></div>
<div class="line"><a name="l00371"></a><span class="lineno"> 371</span> <span class="comment"> * excited level of Mg+ */</span></div>
<div class="line"><a name="l00372"></a><span class="lineno"> 372</span>  <a class="code" href="opacity_8h.html#ad23d4cd39b5a583c0fcb2f84dba06671">OpacityAdd1Subshell</a>(<a class="code" href="opacity_8cpp.html#a26e033ebfaf72894ebadbe8a4b0d85c9">opac</a>.<a class="code" href="structt__opac.html#abc4ce81e425adcaf71f125df7c13fceb">ipOpMgEx</a>,<a class="code" href="opacity_8cpp.html#a26e033ebfaf72894ebadbe8a4b0d85c9">opac</a>.<a class="code" href="structt__opac.html#a4e5c6c0fade41a1dc45218f1581c580a">ipmgex</a>,<a class="code" href="iso_8cpp.html#ab57c2051ee65e0236231a59103b5e80c">iso_sp</a>[<a class="code" href="iso_8h.html#ac9adcc2e25a84dbcfaf67a9753504f29">ipH_LIKE</a>][<a class="code" href="cddefines_8h.html#ad230dc2b848c4445597e35b10e37bb74">ipHYDROGEN</a>].<a class="code" href="classt__iso__sp.html#a49b0d99041ca89e13275cc33d326defd">fb</a>[<a class="code" href="iso_8h.html#a1c4a2ccd8a77c449fcf2ec2eb4561c22">ipH1s</a>].ipIsoLevNIonCon,</div>
<div class="line"><a name="l00373"></a><span class="lineno"> 373</span>  <a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a9f73720f209b1536b1d32300b52a9845">xIonDense</a>[<a class="code" href="cddefines_8h.html#a728c0c756433c31d113f4a21fef181f3">ipMAGNESIUM</a>][1]* <a class="code" href="atoms_8cpp.html#a7eb6de657f28e8be348c77a33a59e768">atoms</a>.<a class="code" href="structt__atoms.html#a840dac94edbfd2a1ac33ee8412ce9fe3">popmg2</a>,<span class="charliteral">'v'</span>);</div>
<div class="line"><a name="l00374"></a><span class="lineno"> 374</span> </div>
<div class="line"><a name="l00375"></a><span class="lineno"> 375</span>  <span class="comment">/* calcium opacity</span></div>
<div class="line"><a name="l00376"></a><span class="lineno"> 376</span> <span class="comment"> * photoionization of excited levels of Ca+ */</span></div>
<div class="line"><a name="l00377"></a><span class="lineno"> 377</span>  <a class="code" href="opacity_8h.html#ad23d4cd39b5a583c0fcb2f84dba06671">OpacityAdd1Subshell</a>(<a class="code" href="opacity_8cpp.html#a26e033ebfaf72894ebadbe8a4b0d85c9">opac</a>.<a class="code" href="structt__opac.html#a4bd293b8d19d0c3ddf416687cfca4c32">ica2op</a>,<a class="code" href="opacity_8cpp.html#a26e033ebfaf72894ebadbe8a4b0d85c9">opac</a>.<a class="code" href="structt__opac.html#a0f168375d05ae39e749321590d064776">ica2ex</a>[0],<a class="code" href="opacity_8cpp.html#a26e033ebfaf72894ebadbe8a4b0d85c9">opac</a>.<a class="code" href="structt__opac.html#a0f168375d05ae39e749321590d064776">ica2ex</a>[1],</div>
<div class="line"><a name="l00378"></a><span class="lineno"> 378</span>  <a class="code" href="ca_8cpp.html#a8a051a95b5db49811d7600ff4ad3df44">ca</a>.<a class="code" href="structt__ca.html#a6a357ba279a502a5c7585d76d1814c56">popca2ex</a>,<span class="charliteral">'v'</span>);</div>
<div class="line"><a name="l00379"></a><span class="lineno"> 379</span> </div>
<div class="line"><a name="l00380"></a><span class="lineno"> 380</span>  <span class="comment">/*******************************************************************</span></div>
<div class="line"><a name="l00381"></a><span class="lineno"> 381</span> <span class="comment"> *</span></div>
<div class="line"><a name="l00382"></a><span class="lineno"> 382</span> <span class="comment"> * complete evaluation of total opacity by adding in the static part and grains</span></div>
<div class="line"><a name="l00383"></a><span class="lineno"> 383</span> <span class="comment"> *</span></div>
<div class="line"><a name="l00384"></a><span class="lineno"> 384</span> <span class="comment"> *******************************************************************/</span></div>
<div class="line"><a name="l00385"></a><span class="lineno"> 385</span> </div>
<div class="line"><a name="l00386"></a><span class="lineno"> 386</span>  <span class="comment">/* this loop defines the variable iso_sp[ipH_LIKE][nelem].fb[n].ConOpacRatio,</span></div>
<div class="line"><a name="l00387"></a><span class="lineno"> 387</span> <span class="comment"> * the ratio of not H to Hydrogen opacity. for grain free environments</span></div>
<div class="line"><a name="l00388"></a><span class="lineno"> 388</span> <span class="comment"> * at low densities this is nearly zero. The correction includes </span></div>
<div class="line"><a name="l00389"></a><span class="lineno"> 389</span> <span class="comment"> * stimulated emission correction */</span></div>
<div class="line"><a name="l00390"></a><span class="lineno"> 390</span>  <span class="keywordflow">for</span>( ipISO=<a class="code" href="iso_8h.html#ac9adcc2e25a84dbcfaf67a9753504f29">ipH_LIKE</a>; ipISO<<a class="code" href="cddefines_8h.html#a9386366f72568a2cb6ca627b91c6a63f">NISO</a>; ++ipISO )</div>
<div class="line"><a name="l00391"></a><span class="lineno"> 391</span>  {</div>
<div class="line"><a name="l00392"></a><span class="lineno"> 392</span>  <span class="keywordflow">for</span>( nelem=ipISO; nelem < <a class="code" href="cddefines_8h.html#a625741fe64429312469751842aab8216">LIMELM</a>; nelem++ )</div>
<div class="line"><a name="l00393"></a><span class="lineno"> 393</span>  {</div>
<div class="line"><a name="l00394"></a><span class="lineno"> 394</span>  <span class="comment">/* this element may be turned off */</span></div>
<div class="line"><a name="l00395"></a><span class="lineno"> 395</span>  <span class="keywordflow">if</span>( <a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#a25e609b78edbf673f25bc6b68a1c7af1">lgElmtOn</a>[nelem] )</div>
<div class="line"><a name="l00396"></a><span class="lineno"> 396</span>  { </div>
<div class="line"><a name="l00397"></a><span class="lineno"> 397</span>  <span class="comment">/* this branch is for startup only */</span></div>
<div class="line"><a name="l00398"></a><span class="lineno"> 398</span>  <span class="keywordflow">if</span>( <a class="code" href="cddefines_8cpp.html#a138c2d35a9db547dc6017c3ab69d3989">nzone</a> < 1 )</div>
<div class="line"><a name="l00399"></a><span class="lineno"> 399</span>  {</div>
<div class="line"><a name="l00400"></a><span class="lineno"> 400</span>  <span class="comment">/* >>chng 06 aug 17, should go to numLevels_local instead of _max */</span></div>
<div class="line"><a name="l00401"></a><span class="lineno"> 401</span>  <span class="keywordflow">for</span>( n=0; n < <a class="code" href="iso_8cpp.html#ab57c2051ee65e0236231a59103b5e80c">iso_sp</a>[ipISO][nelem].<a class="code" href="classt__iso__sp.html#a7051e8642df97b9bab5b72fcbdc297aa">numLevels_local</a>; n++ )</div>
<div class="line"><a name="l00402"></a><span class="lineno"> 402</span>  {</div>
<div class="line"><a name="l00403"></a><span class="lineno"> 403</span>  <span class="keywordflow">if</span>(<a class="code" href="iso_8cpp.html#ab57c2051ee65e0236231a59103b5e80c">iso_sp</a>[ipISO][nelem].fb[n].ipIsoLevNIonCon < <a class="code" href="rfield_8cpp.html#ae577590833d90679b27a7e2b237ee667">rfield</a>.<a class="code" href="structt__rfield.html#aa61dca00b142fadf1b2013c670c6184c">nflux</a> )</div>
<div class="line"><a name="l00404"></a><span class="lineno"> 404</span>  {</div>
<div class="line"><a name="l00405"></a><span class="lineno"> 405</span>  <span class="comment">/*>>chng 04 dec 12, had tested against 1e-30, set to zero if not</span></div>
<div class="line"><a name="l00406"></a><span class="lineno"> 406</span> <span class="comment"> * greater than this - caused oscillations as opacity fell below</span></div>
<div class="line"><a name="l00407"></a><span class="lineno"> 407</span> <span class="comment"> * and around this value - change to greater than 0 */</span></div>
<div class="line"><a name="l00408"></a><span class="lineno"> 408</span>  <span class="comment">/*if( opac.opacity_abs[iso_sp[ipISO][nelem].fb[n].ipIsoLevNIonCon-1] > 1e-30 )*/</span></div>
<div class="line"><a name="l00409"></a><span class="lineno"> 409</span>  <span class="keywordflow">if</span>( <a class="code" href="opacity_8cpp.html#a26e033ebfaf72894ebadbe8a4b0d85c9">opac</a>.<a class="code" href="structt__opac.html#a7dd3774041d210c156a5734dc7b95ce7">opacity_abs</a>[<a class="code" href="iso_8cpp.html#ab57c2051ee65e0236231a59103b5e80c">iso_sp</a>[ipISO][nelem].<a class="code" href="classt__iso__sp.html#a49b0d99041ca89e13275cc33d326defd">fb</a>[n].ipIsoLevNIonCon-1] > 0. )</div>
<div class="line"><a name="l00410"></a><span class="lineno"> 410</span>  {</div>
<div class="line"><a name="l00411"></a><span class="lineno"> 411</span>  <span class="comment">/* >>chng 02 may 06, use general form of threshold cs */</span></div>
<div class="line"><a name="l00412"></a><span class="lineno"> 412</span>  <span class="comment">/*double t1 = atmdat_sth(n)/(POW2(nelem+1.-ipISO));*/</span></div>
<div class="line"><a name="l00413"></a><span class="lineno"> 413</span>  <span class="keywordtype">long</span> <span class="keywordtype">int</span> ip = <a class="code" href="iso_8cpp.html#ab57c2051ee65e0236231a59103b5e80c">iso_sp</a>[ipISO][nelem].<a class="code" href="classt__iso__sp.html#a49b0d99041ca89e13275cc33d326defd">fb</a>[n].ipIsoLevNIonCon;</div>
<div class="line"><a name="l00414"></a><span class="lineno"> 414</span>  <span class="keywordtype">double</span> t2 = <a class="code" href="cddefines_8h.html#a017f14ae326d77fc4c2ba77293ac75aa">csphot</a>(</div>
<div class="line"><a name="l00415"></a><span class="lineno"> 415</span>  ip ,</div>
<div class="line"><a name="l00416"></a><span class="lineno"> 416</span>  ip ,</div>
<div class="line"><a name="l00417"></a><span class="lineno"> 417</span>  <a class="code" href="iso_8cpp.html#ab57c2051ee65e0236231a59103b5e80c">iso_sp</a>[ipISO][nelem].fb[n].ipOpac );</div>
<div class="line"><a name="l00418"></a><span class="lineno"> 418</span> </div>
<div class="line"><a name="l00419"></a><span class="lineno"> 419</span>  <a class="code" href="iso_8cpp.html#ab57c2051ee65e0236231a59103b5e80c">iso_sp</a>[ipISO][nelem].<a class="code" href="classt__iso__sp.html#a49b0d99041ca89e13275cc33d326defd">fb</a>[n].ConOpacRatio = 1.-</div>
<div class="line"><a name="l00420"></a><span class="lineno"> 420</span>  (<a class="code" href="iso_8cpp.html#ab57c2051ee65e0236231a59103b5e80c">iso_sp</a>[ipISO][nelem].<a class="code" href="classt__iso__sp.html#abed262ca9c3408aadb4a4e3e0c902172">st</a>[n].Pop()*t2)/</div>
<div class="line"><a name="l00421"></a><span class="lineno"> 421</span>  <a class="code" href="opacity_8cpp.html#a26e033ebfaf72894ebadbe8a4b0d85c9">opac</a>.<a class="code" href="structt__opac.html#a7dd3774041d210c156a5734dc7b95ce7">opacity_abs</a>[ip-1];</div>
<div class="line"><a name="l00422"></a><span class="lineno"> 422</span>  }</div>
<div class="line"><a name="l00423"></a><span class="lineno"> 423</span>  <span class="keywordflow">else</span></div>
<div class="line"><a name="l00424"></a><span class="lineno"> 424</span>  {</div>
<div class="line"><a name="l00425"></a><span class="lineno"> 425</span>  <a class="code" href="iso_8cpp.html#ab57c2051ee65e0236231a59103b5e80c">iso_sp</a>[ipISO][nelem].<a class="code" href="classt__iso__sp.html#a49b0d99041ca89e13275cc33d326defd">fb</a>[n].ConOpacRatio = 0.;</div>
<div class="line"><a name="l00426"></a><span class="lineno"> 426</span>  }</div>
<div class="line"><a name="l00427"></a><span class="lineno"> 427</span>  }</div>
<div class="line"><a name="l00428"></a><span class="lineno"> 428</span>  }</div>
<div class="line"><a name="l00429"></a><span class="lineno"> 429</span>  }</div>
<div class="line"><a name="l00430"></a><span class="lineno"> 430</span>  <span class="comment">/* end branch for startup only, start branch for all zones including startup */</span></div>
<div class="line"><a name="l00431"></a><span class="lineno"> 431</span>  <span class="comment">/* >>chng 06 aug 17, should go to numLevels_local instead of _max */</span></div>
<div class="line"><a name="l00432"></a><span class="lineno"> 432</span>  <span class="keywordflow">for</span>( n=0; n < <a class="code" href="iso_8cpp.html#ab57c2051ee65e0236231a59103b5e80c">iso_sp</a>[ipISO][nelem].<a class="code" href="classt__iso__sp.html#a7051e8642df97b9bab5b72fcbdc297aa">numLevels_local</a>; n++ )</div>
<div class="line"><a name="l00433"></a><span class="lineno"> 433</span>  {</div>
<div class="line"><a name="l00434"></a><span class="lineno"> 434</span>  <span class="comment">/* ratios of other to total opacity for continua of all atoms done with iso model */</span></div>
<div class="line"><a name="l00435"></a><span class="lineno"> 435</span>  <span class="keywordflow">if</span>(<a class="code" href="iso_8cpp.html#ab57c2051ee65e0236231a59103b5e80c">iso_sp</a>[ipISO][nelem].fb[n].ipIsoLevNIonCon < <a class="code" href="rfield_8cpp.html#ae577590833d90679b27a7e2b237ee667">rfield</a>.<a class="code" href="structt__rfield.html#aa61dca00b142fadf1b2013c670c6184c">nflux</a> )</div>
<div class="line"><a name="l00436"></a><span class="lineno"> 436</span>  {</div>
<div class="line"><a name="l00437"></a><span class="lineno"> 437</span>  <span class="comment">/*>>chng 04 dec 12, had tested against 1e-30, set to zero if not</span></div>
<div class="line"><a name="l00438"></a><span class="lineno"> 438</span> <span class="comment"> * greater than this - caused oscillations as opacity fell below</span></div>
<div class="line"><a name="l00439"></a><span class="lineno"> 439</span> <span class="comment"> * and around this value - change to greater than 0 */</span></div>
<div class="line"><a name="l00440"></a><span class="lineno"> 440</span>  <span class="comment">/*if( opac.opacity_abs[iso_sp[ipISO][nelem].fb[n].ipIsoLevNIonCon-1] > 1e-30 )*/</span></div>
<div class="line"><a name="l00441"></a><span class="lineno"> 441</span>  <span class="keywordflow">if</span>( <a class="code" href="opacity_8cpp.html#a26e033ebfaf72894ebadbe8a4b0d85c9">opac</a>.<a class="code" href="structt__opac.html#a7dd3774041d210c156a5734dc7b95ce7">opacity_abs</a>[<a class="code" href="iso_8cpp.html#ab57c2051ee65e0236231a59103b5e80c">iso_sp</a>[ipISO][nelem].<a class="code" href="classt__iso__sp.html#a49b0d99041ca89e13275cc33d326defd">fb</a>[n].ipIsoLevNIonCon-1] > 0. )</div>
<div class="line"><a name="l00442"></a><span class="lineno"> 442</span>  {</div>
<div class="line"><a name="l00443"></a><span class="lineno"> 443</span>  <span class="comment">/* first get departure coef */</span></div>
<div class="line"><a name="l00444"></a><span class="lineno"> 444</span>  <span class="keywordflow">if</span>( <a class="code" href="iso_8cpp.html#ab57c2051ee65e0236231a59103b5e80c">iso_sp</a>[ipISO][nelem].fb[n].DepartCoef > 1e-30 && (!<a class="code" href="conv_8cpp.html#a02aae728cb00079244fd6d41fefdc959">conv</a>.<a class="code" href="structt__conv.html#af927d37582560e64e2a55704f18aab0b">lgSearch</a> ) )</div>
<div class="line"><a name="l00445"></a><span class="lineno"> 445</span>  {</div>
<div class="line"><a name="l00446"></a><span class="lineno"> 446</span>  <span class="comment">/* this is the usual case, use inverse of departure coef */</span></div>
<div class="line"><a name="l00447"></a><span class="lineno"> 447</span>  fac = 1./<a class="code" href="iso_8cpp.html#ab57c2051ee65e0236231a59103b5e80c">iso_sp</a>[ipISO][nelem].<a class="code" href="classt__iso__sp.html#a49b0d99041ca89e13275cc33d326defd">fb</a>[n].DepartCoef;</div>
<div class="line"><a name="l00448"></a><span class="lineno"> 448</span>  }</div>
<div class="line"><a name="l00449"></a><span class="lineno"> 449</span>  <span class="keywordflow">else</span> <span class="keywordflow">if</span>( <a class="code" href="conv_8cpp.html#a02aae728cb00079244fd6d41fefdc959">conv</a>.<a class="code" href="structt__conv.html#af927d37582560e64e2a55704f18aab0b">lgSearch</a> )</div>
<div class="line"><a name="l00450"></a><span class="lineno"> 450</span>  {</div>
<div class="line"><a name="l00451"></a><span class="lineno"> 451</span>  <span class="comment">/* do not make correction for stim emission during search</span></div>
<div class="line"><a name="l00452"></a><span class="lineno"> 452</span> <span class="comment"> * for initial temperature solution, since trys are very non-equil */</span></div>
<div class="line"><a name="l00453"></a><span class="lineno"> 453</span>  fac = 0.;</div>
<div class="line"><a name="l00454"></a><span class="lineno"> 454</span>  }</div>
<div class="line"><a name="l00455"></a><span class="lineno"> 455</span>  <span class="keywordflow">else</span></div>
<div class="line"><a name="l00456"></a><span class="lineno"> 456</span>  {</div>
<div class="line"><a name="l00457"></a><span class="lineno"> 457</span>  fac = 1.;</div>
<div class="line"><a name="l00458"></a><span class="lineno"> 458</span>  }</div>
<div class="line"><a name="l00459"></a><span class="lineno"> 459</span> </div>
<div class="line"><a name="l00462"></a><span class="lineno"> 462</span>  <span class="comment">/* now get opaicty ratio with correction for stimulated emission */</span></div>
<div class="line"><a name="l00463"></a><span class="lineno"> 463</span>  <span class="comment">/*>>chng 04 dec 12, had tested against 1e-30, set to zero if not</span></div>
<div class="line"><a name="l00464"></a><span class="lineno"> 464</span> <span class="comment"> * greater than this - caused oscillations as opacity fell below</span></div>
<div class="line"><a name="l00465"></a><span class="lineno"> 465</span> <span class="comment"> * and around this value - change to greater than 0 */</span></div>
<div class="line"><a name="l00466"></a><span class="lineno"> 466</span>  <span class="comment">/*if( opac.opacity_abs[iso_sp[ipISO][nelem].fb[n].ipIsoLevNIonCon-1] > 1e-30 )*/</span></div>
<div class="line"><a name="l00467"></a><span class="lineno"> 467</span>  <span class="keywordflow">if</span>( <a class="code" href="opacity_8cpp.html#a26e033ebfaf72894ebadbe8a4b0d85c9">opac</a>.<a class="code" href="structt__opac.html#a7dd3774041d210c156a5734dc7b95ce7">opacity_abs</a>[<a class="code" href="iso_8cpp.html#ab57c2051ee65e0236231a59103b5e80c">iso_sp</a>[ipISO][nelem].<a class="code" href="classt__iso__sp.html#a49b0d99041ca89e13275cc33d326defd">fb</a>[n].ipIsoLevNIonCon-1] > 0. )</div>
<div class="line"><a name="l00468"></a><span class="lineno"> 468</span>  {</div>
<div class="line"><a name="l00469"></a><span class="lineno"> 469</span>  <span class="comment">/* >>chng 02 may 06, use general form of threshold cs */</span></div>
<div class="line"><a name="l00470"></a><span class="lineno"> 470</span>  <span class="keywordtype">long</span> <span class="keywordtype">int</span> ip = <a class="code" href="iso_8cpp.html#ab57c2051ee65e0236231a59103b5e80c">iso_sp</a>[ipISO][nelem].<a class="code" href="classt__iso__sp.html#a49b0d99041ca89e13275cc33d326defd">fb</a>[n].ipIsoLevNIonCon;</div>
<div class="line"><a name="l00471"></a><span class="lineno"> 471</span> </div>
<div class="line"><a name="l00472"></a><span class="lineno"> 472</span>  <span class="keywordtype">double</span> t2 = <a class="code" href="cddefines_8h.html#a017f14ae326d77fc4c2ba77293ac75aa">csphot</a>(</div>
<div class="line"><a name="l00473"></a><span class="lineno"> 473</span>  ip ,</div>
<div class="line"><a name="l00474"></a><span class="lineno"> 474</span>  ip ,</div>
<div class="line"><a name="l00475"></a><span class="lineno"> 475</span>  <a class="code" href="iso_8cpp.html#ab57c2051ee65e0236231a59103b5e80c">iso_sp</a>[ipISO][nelem].fb[n].ipOpac );</div>
<div class="line"><a name="l00476"></a><span class="lineno"> 476</span> </div>
<div class="line"><a name="l00477"></a><span class="lineno"> 477</span>  <span class="keywordtype">double</span> opacity_this_species = </div>
<div class="line"><a name="l00478"></a><span class="lineno"> 478</span>  <a class="code" href="iso_8cpp.html#ab57c2051ee65e0236231a59103b5e80c">iso_sp</a>[ipISO][nelem].<a class="code" href="classt__iso__sp.html#abed262ca9c3408aadb4a4e3e0c902172">st</a>[n].Pop()*t2*</div>
<div class="line"><a name="l00479"></a><span class="lineno"> 479</span>  (1. - fac*<a class="code" href="rfield_8cpp.html#ae577590833d90679b27a7e2b237ee667">rfield</a>.<a class="code" href="structt__rfield.html#ac936125b75f9726c50fa0b11ccb6ea19">ContBoltz</a>[ip-1]);</div>
<div class="line"><a name="l00480"></a><span class="lineno"> 480</span> </div>
<div class="line"><a name="l00481"></a><span class="lineno"> 481</span>  <span class="keywordtype">double</span> opacity_fraction = 1. - opacity_this_species / <a class="code" href="opacity_8cpp.html#a26e033ebfaf72894ebadbe8a4b0d85c9">opac</a>.<a class="code" href="structt__opac.html#a7dd3774041d210c156a5734dc7b95ce7">opacity_abs</a>[ip-1];</div>
<div class="line"><a name="l00482"></a><span class="lineno"> 482</span>  <span class="keywordflow">if</span>(opacity_fraction < 0)</div>
<div class="line"><a name="l00483"></a><span class="lineno"> 483</span>  opacity_fraction = 0.;</div>
<div class="line"><a name="l00484"></a><span class="lineno"> 484</span> </div>
<div class="line"><a name="l00485"></a><span class="lineno"> 485</span>  <span class="comment">/* use mean of old and new ratios */</span></div>
<div class="line"><a name="l00486"></a><span class="lineno"> 486</span>  <a class="code" href="iso_8cpp.html#ab57c2051ee65e0236231a59103b5e80c">iso_sp</a>[ipISO][nelem].<a class="code" href="classt__iso__sp.html#a49b0d99041ca89e13275cc33d326defd">fb</a>[n].ConOpacRatio = </div>
<div class="line"><a name="l00487"></a><span class="lineno"> 487</span>  <a class="code" href="iso_8cpp.html#ab57c2051ee65e0236231a59103b5e80c">iso_sp</a>[ipISO][nelem].<a class="code" href="classt__iso__sp.html#a49b0d99041ca89e13275cc33d326defd">fb</a>[n].ConOpacRatio* 0.75 + 0.25*opacity_fraction;</div>
<div class="line"><a name="l00488"></a><span class="lineno"> 488</span> </div>
<div class="line"><a name="l00489"></a><span class="lineno"> 489</span>  <span class="keywordflow">if</span>(<a class="code" href="iso_8cpp.html#ab57c2051ee65e0236231a59103b5e80c">iso_sp</a>[ipISO][nelem].fb[n].ConOpacRatio < 0.)</div>
<div class="line"><a name="l00490"></a><span class="lineno"> 490</span>  <a class="code" href="iso_8cpp.html#ab57c2051ee65e0236231a59103b5e80c">iso_sp</a>[ipISO][nelem].<a class="code" href="classt__iso__sp.html#a49b0d99041ca89e13275cc33d326defd">fb</a>[n].ConOpacRatio = 0.;</div>
<div class="line"><a name="l00491"></a><span class="lineno"> 491</span>  }</div>
<div class="line"><a name="l00492"></a><span class="lineno"> 492</span>  <span class="keywordflow">else</span></div>
<div class="line"><a name="l00493"></a><span class="lineno"> 493</span>  {</div>
<div class="line"><a name="l00494"></a><span class="lineno"> 494</span>  <a class="code" href="iso_8cpp.html#ab57c2051ee65e0236231a59103b5e80c">iso_sp</a>[ipISO][nelem].<a class="code" href="classt__iso__sp.html#a49b0d99041ca89e13275cc33d326defd">fb</a>[n].ConOpacRatio = 0.;</div>
<div class="line"><a name="l00495"></a><span class="lineno"> 495</span>  }</div>
<div class="line"><a name="l00496"></a><span class="lineno"> 496</span>  }</div>
<div class="line"><a name="l00497"></a><span class="lineno"> 497</span>  <span class="keywordflow">else</span></div>
<div class="line"><a name="l00498"></a><span class="lineno"> 498</span>  {</div>
<div class="line"><a name="l00499"></a><span class="lineno"> 499</span>  <a class="code" href="iso_8cpp.html#ab57c2051ee65e0236231a59103b5e80c">iso_sp</a>[ipISO][nelem].<a class="code" href="classt__iso__sp.html#a49b0d99041ca89e13275cc33d326defd">fb</a>[n].ConOpacRatio = 0.;</div>
<div class="line"><a name="l00500"></a><span class="lineno"> 500</span>  }</div>
<div class="line"><a name="l00501"></a><span class="lineno"> 501</span>  }</div>
<div class="line"><a name="l00502"></a><span class="lineno"> 502</span>  <span class="keywordflow">else</span></div>
<div class="line"><a name="l00503"></a><span class="lineno"> 503</span>  {</div>
<div class="line"><a name="l00504"></a><span class="lineno"> 504</span>  <a class="code" href="iso_8cpp.html#ab57c2051ee65e0236231a59103b5e80c">iso_sp</a>[ipISO][nelem].<a class="code" href="classt__iso__sp.html#a49b0d99041ca89e13275cc33d326defd">fb</a>[n].ConOpacRatio = 0.;</div>
<div class="line"><a name="l00505"></a><span class="lineno"> 505</span>  }</div>
<div class="line"><a name="l00506"></a><span class="lineno"> 506</span>  }</div>
<div class="line"><a name="l00507"></a><span class="lineno"> 507</span>  }</div>
<div class="line"><a name="l00508"></a><span class="lineno"> 508</span>  }</div>
<div class="line"><a name="l00509"></a><span class="lineno"> 509</span>  }</div>
<div class="line"><a name="l00510"></a><span class="lineno"> 510</span> </div>
<div class="line"><a name="l00511"></a><span class="lineno"> 511</span>  <span class="comment">/* add dust grain opacity if dust present */</span></div>
<div class="line"><a name="l00512"></a><span class="lineno"> 512</span>  <span class="keywordflow">if</span>( <a class="code" href="grainvar_8cpp.html#aa3d184f120b9ea3390c44f009e9c74f6">gv</a>.<a class="code" href="class_grain_var.html#ab75fb260b945f4855c1d95ae9f18e3a4">lgDustOn</a>() )</div>
<div class="line"><a name="l00513"></a><span class="lineno"> 513</span>  {</div>
<div class="line"><a name="l00514"></a><span class="lineno"> 514</span>  <span class="comment">/* generate current grain opacities since may be function of depth */</span></div>
<div class="line"><a name="l00515"></a><span class="lineno"> 515</span>  <span class="comment">/* >>chng 01 may 11, removed code to update grain opacities, already done by GrainChargeTemp */</span></div>
<div class="line"><a name="l00516"></a><span class="lineno"> 516</span>  <span class="keywordflow">for</span>( i=0; i < <a class="code" href="rfield_8cpp.html#ae577590833d90679b27a7e2b237ee667">rfield</a>.<a class="code" href="structt__rfield.html#aa61dca00b142fadf1b2013c670c6184c">nflux</a>; i++ )</div>
<div class="line"><a name="l00517"></a><span class="lineno"> 517</span>  {</div>
<div class="line"><a name="l00518"></a><span class="lineno"> 518</span>  <span class="comment">/* units cm-1 */</span></div>
<div class="line"><a name="l00519"></a><span class="lineno"> 519</span>  <a class="code" href="opacity_8cpp.html#a26e033ebfaf72894ebadbe8a4b0d85c9">opac</a>.<a class="code" href="structt__opac.html#a664caf74d574f41ddcb953f008803b80">opacity_sct</a>[i] += <a class="code" href="grainvar_8cpp.html#aa3d184f120b9ea3390c44f009e9c74f6">gv</a>.<a class="code" href="class_grain_var.html#a3dd47adcce59052c2093266d3aa16b75">dstsc</a>[i]*<a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#ac3103e7dcf065b405339072b2c833328">gas_phase</a>[<a class="code" href="cddefines_8h.html#ad230dc2b848c4445597e35b10e37bb74">ipHYDROGEN</a>];</div>
<div class="line"><a name="l00520"></a><span class="lineno"> 520</span>  <a class="code" href="opacity_8cpp.html#a26e033ebfaf72894ebadbe8a4b0d85c9">opac</a>.<a class="code" href="structt__opac.html#a7dd3774041d210c156a5734dc7b95ce7">opacity_abs</a>[i] += <a class="code" href="grainvar_8cpp.html#aa3d184f120b9ea3390c44f009e9c74f6">gv</a>.<a class="code" href="class_grain_var.html#aaaf8fe203f0c15b848d7ca50aa538165">dstab</a>[i]*<a class="code" href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a>.<a class="code" href="structt__dense.html#ac3103e7dcf065b405339072b2c833328">gas_phase</a>[<a class="code" href="cddefines_8h.html#ad230dc2b848c4445597e35b10e37bb74">ipHYDROGEN</a>];</div>
<div class="line"><a name="l00521"></a><span class="lineno"> 521</span>  }</div>
<div class="line"><a name="l00522"></a><span class="lineno"> 522</span>  }</div>
<div class="line"><a name="l00523"></a><span class="lineno"> 523</span> </div>
<div class="line"><a name="l00524"></a><span class="lineno"> 524</span>  <span class="comment">/* check that opacity is sane */</span></div>
<div class="line"><a name="l00525"></a><span class="lineno"> 525</span>  <span class="keywordflow">for</span>( i=0; i < <a class="code" href="rfield_8cpp.html#ae577590833d90679b27a7e2b237ee667">rfield</a>.<a class="code" href="structt__rfield.html#aa61dca00b142fadf1b2013c670c6184c">nflux</a>; i++ )</div>
<div class="line"><a name="l00526"></a><span class="lineno"> 526</span>  {</div>
<div class="line"><a name="l00527"></a><span class="lineno"> 527</span>  <span class="comment">/* OpacStatic was zeroed in OpacityZero, incremented in opacityadd1subshell */</span></div>
<div class="line"><a name="l00528"></a><span class="lineno"> 528</span>  <a class="code" href="opacity_8cpp.html#a26e033ebfaf72894ebadbe8a4b0d85c9">opac</a>.<a class="code" href="structt__opac.html#a7dd3774041d210c156a5734dc7b95ce7">opacity_abs</a>[i] += <a class="code" href="opacity_8cpp.html#a26e033ebfaf72894ebadbe8a4b0d85c9">opac</a>.<a class="code" href="structt__opac.html#a5413ce60d24ada2db2107c86dd7a128a">OpacStatic</a>[i];</div>
<div class="line"><a name="l00529"></a><span class="lineno"> 529</span>  <span class="comment">/* make sure that opacity is positive */</span></div>
<div class="line"><a name="l00530"></a><span class="lineno"> 530</span>  <span class="comment">/*ASSERT( opac.opacity_abs[i] > 0. );*/</span></div>
<div class="line"><a name="l00531"></a><span class="lineno"> 531</span>  }</div>
<div class="line"><a name="l00532"></a><span class="lineno"> 532</span> </div>
<div class="line"><a name="l00533"></a><span class="lineno"> 533</span>  <span class="comment">/* compute gas albedo here */</span></div>
<div class="line"><a name="l00534"></a><span class="lineno"> 534</span>  <span class="keywordflow">for</span>( i=0; i < <a class="code" href="rfield_8cpp.html#ae577590833d90679b27a7e2b237ee667">rfield</a>.<a class="code" href="structt__rfield.html#aa61dca00b142fadf1b2013c670c6184c">nflux</a>; i++ )</div>
<div class="line"><a name="l00535"></a><span class="lineno"> 535</span>  {</div>
<div class="line"><a name="l00536"></a><span class="lineno"> 536</span>  <a class="code" href="opacity_8cpp.html#a26e033ebfaf72894ebadbe8a4b0d85c9">opac</a>.<a class="code" href="structt__opac.html#abf0de6f2558ae5a9b1ee044c2b18029f">albedo</a>[i] = <a class="code" href="opacity_8cpp.html#a26e033ebfaf72894ebadbe8a4b0d85c9">opac</a>.<a class="code" href="structt__opac.html#a664caf74d574f41ddcb953f008803b80">opacity_sct</a>[i]/</div>
<div class="line"><a name="l00537"></a><span class="lineno"> 537</span>  (<a class="code" href="opacity_8cpp.html#a26e033ebfaf72894ebadbe8a4b0d85c9">opac</a>.<a class="code" href="structt__opac.html#a664caf74d574f41ddcb953f008803b80">opacity_sct</a>[i] + <a class="code" href="opacity_8cpp.html#a26e033ebfaf72894ebadbe8a4b0d85c9">opac</a>.<a class="code" href="structt__opac.html#a7dd3774041d210c156a5734dc7b95ce7">opacity_abs</a>[i]);</div>
<div class="line"><a name="l00538"></a><span class="lineno"> 538</span>  }</div>
<div class="line"><a name="l00539"></a><span class="lineno"> 539</span> </div>
<div class="line"><a name="l00540"></a><span class="lineno"> 540</span>  <span class="comment">/* during search phase set old opacity array to current value */</span></div>
<div class="line"><a name="l00541"></a><span class="lineno"> 541</span>  <span class="keywordflow">if</span>( <a class="code" href="conv_8cpp.html#a02aae728cb00079244fd6d41fefdc959">conv</a>.<a class="code" href="structt__conv.html#af927d37582560e64e2a55704f18aab0b">lgSearch</a> )</div>
<div class="line"><a name="l00542"></a><span class="lineno"> 542</span>  <a class="code" href="opacity_8h.html#afbd4726aca948ee46517cb437c3efe0c">OpacityZeroOld</a>();</div>
<div class="line"><a name="l00543"></a><span class="lineno"> 543</span> </div>
<div class="line"><a name="l00544"></a><span class="lineno"> 544</span>  <span class="keywordflow">if</span>( <a class="code" href="trace_8cpp.html#a093b5dbeadd21d8c1a95fe9d23ab5b72">trace</a>.<a class="code" href="structt__trace.html#a8dda16a4d173d21317786ab5b9f440db">lgTrace</a> )</div>
<div class="line"><a name="l00545"></a><span class="lineno"> 545</span>  {</div>
<div class="line"><a name="l00546"></a><span class="lineno"> 546</span>  fprintf( <a class="code" href="cddefines_8cpp.html#a94bc49f6569c17375ac7fbf6a66f6dd0">ioQQQ</a>, <span class="stringliteral">" OpacityAddTotal returns; grd rec eff (opac) for Hn=1,4%10.2e%10.2e%10.2e%10.2e%10.2e%10.2e%10.2e%10.2e%10.2e%10.2e HeI,II:%10.2e%10.2e\n"</span>, </div>
<div class="line"><a name="l00547"></a><span class="lineno"> 547</span>  <a class="code" href="iso_8cpp.html#ab57c2051ee65e0236231a59103b5e80c">iso_sp</a>[<a class="code" href="iso_8h.html#ac9adcc2e25a84dbcfaf67a9753504f29">ipH_LIKE</a>][<a class="code" href="cddefines_8h.html#ad230dc2b848c4445597e35b10e37bb74">ipHYDROGEN</a>].fb[ipH1s].ConOpacRatio, </div>
<div class="line"><a name="l00548"></a><span class="lineno"> 548</span>  <a class="code" href="iso_8cpp.html#ab57c2051ee65e0236231a59103b5e80c">iso_sp</a>[<a class="code" href="iso_8h.html#ac9adcc2e25a84dbcfaf67a9753504f29">ipH_LIKE</a>][<a class="code" href="cddefines_8h.html#ad230dc2b848c4445597e35b10e37bb74">ipHYDROGEN</a>].fb[<a class="code" href="iso_8h.html#ac423e56cf6f601b2e248c16bafac9ba4">ipH2s</a>].ConOpacRatio, </div>
<div class="line"><a name="l00549"></a><span class="lineno"> 549</span>  <a class="code" href="iso_8cpp.html#ab57c2051ee65e0236231a59103b5e80c">iso_sp</a>[<a class="code" href="iso_8h.html#ac9adcc2e25a84dbcfaf67a9753504f29">ipH_LIKE</a>][<a class="code" href="cddefines_8h.html#ad230dc2b848c4445597e35b10e37bb74">ipHYDROGEN</a>].fb[<a class="code" href="iso_8h.html#a63acd79d87d47a44d38d8cc1b4239c48">ipH2p</a>].ConOpacRatio, </div>
<div class="line"><a name="l00550"></a><span class="lineno"> 550</span>  <a class="code" href="iso_8cpp.html#ab57c2051ee65e0236231a59103b5e80c">iso_sp</a>[<a class="code" href="iso_8h.html#ac9adcc2e25a84dbcfaf67a9753504f29">ipH_LIKE</a>][<a class="code" href="cddefines_8h.html#ad230dc2b848c4445597e35b10e37bb74">ipHYDROGEN</a>].fb[<a class="code" href="iso_8h.html#a4767af59d78503d388ecd1014e2e1cc1">ipH3s</a>].ConOpacRatio, </div>
<div class="line"><a name="l00551"></a><span class="lineno"> 551</span>  <a class="code" href="iso_8cpp.html#ab57c2051ee65e0236231a59103b5e80c">iso_sp</a>[<a class="code" href="iso_8h.html#ac9adcc2e25a84dbcfaf67a9753504f29">ipH_LIKE</a>][<a class="code" href="cddefines_8h.html#ad230dc2b848c4445597e35b10e37bb74">ipHYDROGEN</a>].fb[<a class="code" href="iso_8h.html#a0ed40aad8c7e38f118e1fac6063aef66">ipH3p</a>].ConOpacRatio, </div>
<div class="line"><a name="l00552"></a><span class="lineno"> 552</span>  <a class="code" href="iso_8cpp.html#ab57c2051ee65e0236231a59103b5e80c">iso_sp</a>[<a class="code" href="iso_8h.html#ac9adcc2e25a84dbcfaf67a9753504f29">ipH_LIKE</a>][<a class="code" href="cddefines_8h.html#ad230dc2b848c4445597e35b10e37bb74">ipHYDROGEN</a>].fb[<a class="code" href="iso_8h.html#abc58c6fefd4cd5445c917adbbcd9c5b0">ipH3d</a>].ConOpacRatio, </div>
<div class="line"><a name="l00553"></a><span class="lineno"> 553</span>  <a class="code" href="iso_8cpp.html#ab57c2051ee65e0236231a59103b5e80c">iso_sp</a>[<a class="code" href="iso_8h.html#ac9adcc2e25a84dbcfaf67a9753504f29">ipH_LIKE</a>][<a class="code" href="cddefines_8h.html#ad230dc2b848c4445597e35b10e37bb74">ipHYDROGEN</a>].fb[<a class="code" href="iso_8h.html#a85c550a686f23a5012e9da00bb59f2de">ipH4s</a>].ConOpacRatio, </div>
<div class="line"><a name="l00554"></a><span class="lineno"> 554</span>  <a class="code" href="iso_8cpp.html#ab57c2051ee65e0236231a59103b5e80c">iso_sp</a>[<a class="code" href="iso_8h.html#ac9adcc2e25a84dbcfaf67a9753504f29">ipH_LIKE</a>][<a class="code" href="cddefines_8h.html#ad230dc2b848c4445597e35b10e37bb74">ipHYDROGEN</a>].fb[<a class="code" href="iso_8h.html#a31f2f60d7eada9b7b14e1cb90c26069f">ipH4p</a>].ConOpacRatio, </div>
<div class="line"><a name="l00555"></a><span class="lineno"> 555</span>  <a class="code" href="iso_8cpp.html#ab57c2051ee65e0236231a59103b5e80c">iso_sp</a>[<a class="code" href="iso_8h.html#ac9adcc2e25a84dbcfaf67a9753504f29">ipH_LIKE</a>][<a class="code" href="cddefines_8h.html#ad230dc2b848c4445597e35b10e37bb74">ipHYDROGEN</a>].fb[<a class="code" href="iso_8h.html#a50d753d45a4c10d555c12ebad8edc90c">ipH4d</a>].ConOpacRatio, </div>
<div class="line"><a name="l00556"></a><span class="lineno"> 556</span>  <a class="code" href="iso_8cpp.html#ab57c2051ee65e0236231a59103b5e80c">iso_sp</a>[<a class="code" href="iso_8h.html#ac9adcc2e25a84dbcfaf67a9753504f29">ipH_LIKE</a>][<a class="code" href="cddefines_8h.html#ad230dc2b848c4445597e35b10e37bb74">ipHYDROGEN</a>].fb[<a class="code" href="iso_8h.html#aa921e0e059cb9306bb2db94a308de043">ipH4f</a>].ConOpacRatio,</div>
<div class="line"><a name="l00557"></a><span class="lineno"> 557</span>  <a class="code" href="iso_8cpp.html#ab57c2051ee65e0236231a59103b5e80c">iso_sp</a>[<a class="code" href="iso_8h.html#a40dba8bba653792c64e61ce10683217f">ipHE_LIKE</a>][<a class="code" href="cddefines_8h.html#a998e102b7d6537d3ef5200647c4b8559">ipHELIUM</a>].fb[<a class="code" href="iso_8h.html#a05145858be8bbb74930ebd32eb157bd4">ipHe1s1S</a>].ConOpacRatio,</div>
<div class="line"><a name="l00558"></a><span class="lineno"> 558</span>  <a class="code" href="iso_8cpp.html#ab57c2051ee65e0236231a59103b5e80c">iso_sp</a>[<a class="code" href="iso_8h.html#ac9adcc2e25a84dbcfaf67a9753504f29">ipH_LIKE</a>][<a class="code" href="cddefines_8h.html#a998e102b7d6537d3ef5200647c4b8559">ipHELIUM</a>].fb[ipH1s].ConOpacRatio );</div>
<div class="line"><a name="l00559"></a><span class="lineno"> 559</span>  }</div>
<div class="line"><a name="l00560"></a><span class="lineno"> 560</span> </div>
<div class="line"><a name="l00561"></a><span class="lineno"> 561</span>  {</div>
<div class="line"><a name="l00562"></a><span class="lineno"> 562</span>  <span class="comment">/* following should be set true to print strongest ots contributors */</span></div>
<div class="line"><a name="l00563"></a><span class="lineno"> 563</span>  <span class="keyword">enum</span> {DEBUG_LOC=<span class="keyword">false</span>};</div>
<div class="line"><a name="l00564"></a><span class="lineno"> 564</span>  <span class="keywordflow">if</span>( DEBUG_LOC && (<a class="code" href="cddefines_8cpp.html#a138c2d35a9db547dc6017c3ab69d3989">nzone</a>>=378) )</div>
<div class="line"><a name="l00565"></a><span class="lineno"> 565</span>  {</div>
<div class="line"><a name="l00566"></a><span class="lineno"> 566</span>  <span class="keywordflow">if</span>( <a class="code" href="cddefines_8cpp.html#a138c2d35a9db547dc6017c3ab69d3989">nzone</a> > 380 ) </div>
<div class="line"><a name="l00567"></a><span class="lineno"> 567</span>  <a class="code" href="cddefines_8h.html#a937636e18a3a517d1aeb2c111adb5160">cdEXIT</a>( <a class="code" href="cddefines_8h.html#a73efe787c131b385070f25d18b7c9aa4">EXIT_FAILURE</a> );</div>
<div class="line"><a name="l00568"></a><span class="lineno"> 568</span>  <span class="keywordflow">for</span>( i=0; i<<a class="code" href="rfield_8cpp.html#ae577590833d90679b27a7e2b237ee667">rfield</a>.<a class="code" href="structt__rfield.html#aa61dca00b142fadf1b2013c670c6184c">nflux</a>; ++i )</div>
<div class="line"><a name="l00569"></a><span class="lineno"> 569</span>  {</div>
<div class="line"><a name="l00570"></a><span class="lineno"> 570</span>  fprintf(<a class="code" href="cddefines_8cpp.html#a94bc49f6569c17375ac7fbf6a66f6dd0">ioQQQ</a>,<span class="stringliteral">"rtotsbugggg\t%li\t%.3e\t%.3e\t%.3e\t%.3e\n"</span>,</div>
<div class="line"><a name="l00571"></a><span class="lineno"> 571</span>  <a class="code" href="conv_8cpp.html#a02aae728cb00079244fd6d41fefdc959">conv</a>.<a class="code" href="structt__conv.html#a76e51cc29029953ab465d03b07364c7d">nPres2Ioniz</a>,</div>
<div class="line"><a name="l00572"></a><span class="lineno"> 572</span>  <a class="code" href="rfield_8cpp.html#ae577590833d90679b27a7e2b237ee667">rfield</a>.<a class="code" href="structt__rfield.html#ab80ba75cc614c2e11602c627ccb068a5">anu</a>[i],</div>
<div class="line"><a name="l00573"></a><span class="lineno"> 573</span>  <a class="code" href="opacity_8cpp.html#a26e033ebfaf72894ebadbe8a4b0d85c9">opac</a>.<a class="code" href="structt__opac.html#a7dd3774041d210c156a5734dc7b95ce7">opacity_abs</a>[i],</div>
<div class="line"><a name="l00574"></a><span class="lineno"> 574</span>  <a class="code" href="rfield_8cpp.html#ae577590833d90679b27a7e2b237ee667">rfield</a>.<a class="code" href="structt__rfield.html#a735b29ffacb54591ae2c8ca8bccff1b6">otscon</a>[i],</div>
<div class="line"><a name="l00575"></a><span class="lineno"> 575</span>  <a class="code" href="rfield_8cpp.html#ae577590833d90679b27a7e2b237ee667">rfield</a>.<a class="code" href="structt__rfield.html#a829624ca3f688f0e4217bb4b9a44d514">otslin</a>[i]);</div>
<div class="line"><a name="l00576"></a><span class="lineno"> 576</span>  }</div>
<div class="line"><a name="l00577"></a><span class="lineno"> 577</span>  }</div>
<div class="line"><a name="l00578"></a><span class="lineno"> 578</span>  }</div>
<div class="line"><a name="l00579"></a><span class="lineno"> 579</span>  <span class="keywordflow">return</span>;</div>
<div class="line"><a name="l00580"></a><span class="lineno"> 580</span> }</div>
<div class="ttc" id="opacity_8h_html_ab7e78d694a0ada3e9a7dad5b6d553359"><div class="ttname"><a href="opacity_8h.html#ab7e78d694a0ada3e9a7dad5b6d553359">OpacityAdd1Element</a></div><div class="ttdeci">void OpacityAdd1Element(long int ipZ)</div><div class="ttdef"><b>Definition:</b> <a href="opacity__add1element_8cpp_source.html#l00012">opacity_add1element.cpp:12</a></div></div>
<div class="ttc" id="structt__ca_html_a6a357ba279a502a5c7585d76d1814c56"><div class="ttname"><a href="structt__ca.html#a6a357ba279a502a5c7585d76d1814c56">t_ca::popca2ex</a></div><div class="ttdeci">realnum popca2ex</div><div class="ttdef"><b>Definition:</b> <a href="ca_8h_source.html#l00034">ca.h:34</a></div></div>
<div class="ttc" id="cddefines_8h_html_a393053491edc087c17e89d597b6e16f5"><div class="ttname"><a href="cddefines_8h.html#a393053491edc087c17e89d597b6e16f5">MIN2</a></div><div class="ttdeci">#define MIN2</div><div class="ttdef"><b>Definition:</b> <a href="cddefines_8h_source.html#l00765">cddefines.h:765</a></div></div>
<div class="ttc" id="structt__hmi_html_aa3b0d4a7544a935bc96b228f277f9e8d"><div class="ttname"><a href="structt__hmi.html#aa3b0d4a7544a935bc96b228f277f9e8d">t_hmi::iphmin</a></div><div class="ttdeci">long int iphmin</div><div class="ttdef"><b>Definition:</b> <a href="hmi_8h_source.html#l00117">hmi.h:117</a></div></div>
<div class="ttc" id="h2_8h_html"><div class="ttname"><a href="h2_8h.html">h2.h</a></div></div>
<div class="ttc" id="structt__rfield_html_a7e78b9610ff90cb0d463adb28b62a38f"><div class="ttname"><a href="structt__rfield.html#a7e78b9610ff90cb0d463adb28b62a38f">t_rfield::gff</a></div><div class="ttdeci">realnum ** gff</div><div class="ttdef"><b>Definition:</b> <a href="rfield_8h_source.html#l00227">rfield.h:227</a></div></div>
<div class="ttc" id="mole_8cpp_html_a31d5a7dde43a2027f9257ef2d3577556"><div class="ttname"><a href="mole_8cpp.html#a31d5a7dde43a2027f9257ef2d3577556">mole_global</a></div><div class="ttdeci">t_mole_global mole_global</div><div class="ttdef"><b>Definition:</b> <a href="mole_8cpp_source.html#l00006">mole.cpp:6</a></div></div>
<div class="ttc" id="classt__mole__global_html_aa389984a72137427404a01d109811516"><div class="ttname"><a href="classt__mole__global.html#aa389984a72137427404a01d109811516">t_mole_global::lgStancil</a></div><div class="ttdeci">bool lgStancil</div><div class="ttdef"><b>Definition:</b> <a href="mole_8h_source.html#l00289">mole.h:289</a></div></div>
<div class="ttc" id="class_grain_var_html_aaaf8fe203f0c15b848d7ca50aa538165"><div class="ttname"><a href="class_grain_var.html#aaaf8fe203f0c15b848d7ca50aa538165">GrainVar::dstab</a></div><div class="ttdeci">vector< double > dstab</div><div class="ttdef"><b>Definition:</b> <a href="grainvar_8h_source.html#l00524">grainvar.h:524</a></div></div>
<div class="ttc" id="atoms_8h_html"><div class="ttname"><a href="atoms_8h.html">atoms.h</a></div></div>
<div class="ttc" id="structt__opac_html_a03b998153c6a5789c90c42b949bfe16a"><div class="ttname"><a href="structt__opac.html#a03b998153c6a5789c90c42b949bfe16a">t_opac::ipRayScat</a></div><div class="ttdeci">long int ipRayScat</div><div class="ttdef"><b>Definition:</b> <a href="opacity_8h_source.html#l00210">opacity.h:210</a></div></div>
<div class="ttc" id="classt__ionbal_html_adb9cd2258f325f3393e179d2867da33c"><div class="ttname"><a href="classt__ionbal.html#adb9cd2258f325f3393e179d2867da33c">t_ionbal::nCompRecoilElec</a></div><div class="ttdeci">long int nCompRecoilElec[LIMELM]</div><div class="ttdef"><b>Definition:</b> <a href="ionbal_8h_source.html#l00188">ionbal.h:188</a></div></div>
<div class="ttc" id="trace_8h_html"><div class="ttname"><a href="trace_8h.html">trace.h</a></div></div>
<div class="ttc" id="iso_8h_html_a50d753d45a4c10d555c12ebad8edc90c"><div class="ttname"><a href="iso_8h.html#a50d753d45a4c10d555c12ebad8edc90c">ipH4d</a></div><div class="ttdeci">const int ipH4d</div><div class="ttdef"><b>Definition:</b> <a href="iso_8h_source.html#l00035">iso.h:35</a></div></div>
<div class="ttc" id="cddefines_8h_html_a728c0c756433c31d113f4a21fef181f3"><div class="ttname"><a href="cddefines_8h.html#a728c0c756433c31d113f4a21fef181f3">ipMAGNESIUM</a></div><div class="ttdeci">const int ipMAGNESIUM</div><div class="ttdef"><b>Definition:</b> <a href="cddefines_8h_source.html#l00320">cddefines.h:320</a></div></div>
<div class="ttc" id="structt__opac_html_a1fc82277384d5b9fc3f9bc7baef259b9"><div class="ttname"><a href="structt__opac.html#a1fc82277384d5b9fc3f9bc7baef259b9">t_opac::OpacStack</a></div><div class="ttdeci">double * OpacStack</div><div class="ttdef"><b>Definition:</b> <a href="opacity_8h_source.html#l00151">opacity.h:151</a></div></div>
<div class="ttc" id="structt__opac_html_a7dd3774041d210c156a5734dc7b95ce7"><div class="ttname"><a href="structt__opac.html#a7dd3774041d210c156a5734dc7b95ce7">t_opac::opacity_abs</a></div><div class="ttdeci">double * opacity_abs</div><div class="ttdef"><b>Definition:</b> <a href="opacity_8h_source.html#l00095">opacity.h:95</a></div></div>
<div class="ttc" id="classt__iso__sp_html_abed262ca9c3408aadb4a4e3e0c902172"><div class="ttname"><a href="classt__iso__sp.html#abed262ca9c3408aadb4a4e3e0c902172">t_iso_sp::st</a></div><div class="ttdeci">qList st</div><div class="ttdef"><b>Definition:</b> <a href="iso_8h_source.html#l00453">iso.h:453</a></div></div>
<div class="ttc" id="structt__opac_html_abf0de6f2558ae5a9b1ee044c2b18029f"><div class="ttname"><a href="structt__opac.html#abf0de6f2558ae5a9b1ee044c2b18029f">t_opac::albedo</a></div><div class="ttdeci">double * albedo</div><div class="ttdef"><b>Definition:</b> <a href="opacity_8h_source.html#l00104">opacity.h:104</a></div></div>
<div class="ttc" id="iso_8h_html_a40dba8bba653792c64e61ce10683217f"><div class="ttname"><a href="iso_8h.html#a40dba8bba653792c64e61ce10683217f">ipHE_LIKE</a></div><div class="ttdeci">const int ipHE_LIKE</div><div class="ttdef"><b>Definition:</b> <a href="iso_8h_source.html#l00063">iso.h:63</a></div></div>
<div class="ttc" id="oxy_8h_html"><div class="ttname"><a href="oxy_8h.html">oxy.h</a></div></div>
<div class="ttc" id="opacity_8cpp_html_a26e033ebfaf72894ebadbe8a4b0d85c9"><div class="ttname"><a href="opacity_8cpp.html#a26e033ebfaf72894ebadbe8a4b0d85c9">opac</a></div><div class="ttdeci">t_opac opac</div><div class="ttdef"><b>Definition:</b> <a href="opacity_8cpp_source.html#l00005">opacity.cpp:5</a></div></div>
<div class="ttc" id="classt__mole__global_html_ad164119341e844ce567c2978441cad0f"><div class="ttname"><a href="classt__mole__global.html#ad164119341e844ce567c2978441cad0f">t_mole_global::num_calc</a></div><div class="ttdeci">int num_calc</div><div class="ttdef"><b>Definition:</b> <a href="mole_8h_source.html#l00314">mole.h:314</a></div></div>
<div class="ttc" id="ca_8h_html"><div class="ttname"><a href="ca_8h.html">ca.h</a></div></div>
<div class="ttc" id="classdiatomics_html_abb8b2b1314fed846f0368e8f2135a138"><div class="ttname"><a href="classdiatomics.html#abb8b2b1314fed846f0368e8f2135a138">diatomics::ip_photo_opac_thresh</a></div><div class="ttdeci">long ip_photo_opac_thresh</div><div class="ttdef"><b>Definition:</b> <a href="h2__priv_8h_source.html#l00310">h2_priv.h:310</a></div></div>
<div class="ttc" id="structt__opac_html_a5413ce60d24ada2db2107c86dd7a128a"><div class="ttname"><a href="structt__opac.html#a5413ce60d24ada2db2107c86dd7a128a">t_opac::OpacStatic</a></div><div class="ttdeci">double * OpacStatic</div><div class="ttdef"><b>Definition:</b> <a href="opacity_8h_source.html#l00114">opacity.h:114</a></div></div>
<div class="ttc" id="cpu_8h_html_af1d998d79044c9644b48f8d5647d57b6"><div class="ttname"><a href="cpu_8h.html#af1d998d79044c9644b48f8d5647d57b6">SMALLFLOAT</a></div><div class="ttdeci">const realnum SMALLFLOAT</div><div class="ttdef"><b>Definition:</b> <a href="cpu_8h_source.html#l00178">cpu.h:178</a></div></div>
<div class="ttc" id="cddefines_8h_html_a9386366f72568a2cb6ca627b91c6a63f"><div class="ttname"><a href="cddefines_8h.html#a9386366f72568a2cb6ca627b91c6a63f">NISO</a></div><div class="ttdeci">const int NISO</div><div class="ttdef"><b>Definition:</b> <a href="cddefines_8h_source.html#l00265">cddefines.h:265</a></div></div>
<div class="ttc" id="structt__opac_html_a73439483830c8a5f4050efc6a38f883f"><div class="ttname"><a href="structt__opac.html#a73439483830c8a5f4050efc6a38f883f">t_opac::ipo1exc</a></div><div class="ttdeci">long int ipo1exc[3]</div><div class="ttdef"><b>Definition:</b> <a href="opacity_8h_source.html#l00210">opacity.h:210</a></div></div>
<div class="ttc" id="cddefines_8h_html_a395d4c16b35561b0c4805467a7d9f605"><div class="ttname"><a href="cddefines_8h.html#a395d4c16b35561b0c4805467a7d9f605">ipOXYGEN</a></div><div class="ttdeci">const int ipOXYGEN</div><div class="ttdef"><b>Definition:</b> <a href="cddefines_8h_source.html#l00316">cddefines.h:316</a></div></div>
<div class="ttc" id="conv_8cpp_html_a02aae728cb00079244fd6d41fefdc959"><div class="ttname"><a href="conv_8cpp.html#a02aae728cb00079244fd6d41fefdc959">conv</a></div><div class="ttdeci">t_conv conv</div><div class="ttdef"><b>Definition:</b> <a href="conv_8cpp_source.html#l00005">conv.cpp:5</a></div></div>
<div class="ttc" id="phycon_8cpp_html_a58e7356b28193ac2b0ee8b08f06939ba"><div class="ttname"><a href="phycon_8cpp.html#a58e7356b28193ac2b0ee8b08f06939ba">phycon</a></div><div class="ttdeci">t_phycon phycon</div><div class="ttdef"><b>Definition:</b> <a href="phycon_8cpp_source.html#l00006">phycon.cpp:6</a></div></div>
<div class="ttc" id="structt__opac_html_a9c0e964e1d4b47f2b141a935bec0d31d"><div class="ttname"><a href="structt__opac.html#a9c0e964e1d4b47f2b141a935bec0d31d">t_opac::ih2pof</a></div><div class="ttdeci">long int ih2pof</div><div class="ttdef"><b>Definition:</b> <a href="opacity_8h_source.html#l00210">opacity.h:210</a></div></div>
<div class="ttc" id="dense_8cpp_html_a61a760c32a26242e4eb24e230b3d5c57"><div class="ttname"><a href="dense_8cpp.html#a61a760c32a26242e4eb24e230b3d5c57">dense</a></div><div class="ttdeci">t_dense dense</div><div class="ttdef"><b>Definition:</b> <a href="dense_8cpp_source.html#l00024">dense.cpp:24</a></div></div>
<div class="ttc" id="structt__opac_html_a904de84993988ee5b8b4df0d9077a1b8"><div class="ttname"><a href="structt__opac.html#a904de84993988ee5b8b4df0d9077a1b8">t_opac::stimax</a></div><div class="ttdeci">realnum stimax[2]</div><div class="ttdef"><b>Definition:</b> <a href="opacity_8h_source.html#l00297">opacity.h:297</a></div></div>
<div class="ttc" id="phycon_8h_html"><div class="ttname"><a href="phycon_8h.html">phycon.h</a></div></div>
<div class="ttc" id="structt__opac_html_a5b63b5ec71b5c4d7e71295967536af65"><div class="ttname"><a href="structt__opac.html#a5b63b5ec71b5c4d7e71295967536af65">t_opac::ipo3exc</a></div><div class="ttdeci">long int ipo3exc[3]</div><div class="ttdef"><b>Definition:</b> <a href="opacity_8h_source.html#l00210">opacity.h:210</a></div></div>
<div class="ttc" id="cddefines_8cpp_html_a94bc49f6569c17375ac7fbf6a66f6dd0"><div class="ttname"><a href="cddefines_8cpp.html#a94bc49f6569c17375ac7fbf6a66f6dd0">ioQQQ</a></div><div class="ttdeci">FILE * ioQQQ</div><div class="ttdef"><b>Definition:</b> <a href="cddefines_8cpp_source.html#l00007">cddefines.cpp:7</a></div></div>
<div class="ttc" id="dense_8h_html"><div class="ttname"><a href="dense_8h.html">dense.h</a></div></div>
<div class="ttc" id="structt__opac_html_a664caf74d574f41ddcb953f008803b80"><div class="ttname"><a href="structt__opac.html#a664caf74d574f41ddcb953f008803b80">t_opac::opacity_sct</a></div><div class="ttdeci">double * opacity_sct</div><div class="ttdef"><b>Definition:</b> <a href="opacity_8h_source.html#l00098">opacity.h:98</a></div></div>
<div class="ttc" id="mole_8h_html_aaa8c58e96a89149454224f87acefcf90"><div class="ttname"><a href="mole_8h.html#aaa8c58e96a89149454224f87acefcf90">findspecieslocal</a></div><div class="ttdeci">molezone * findspecieslocal(const char buf[])</div><div class="ttdef"><b>Definition:</b> <a href="mole__species_8cpp_source.html#l00832">mole_species.cpp:832</a></div></div>
<div class="ttc" id="cddefines_8cpp_html_a138c2d35a9db547dc6017c3ab69d3989"><div class="ttname"><a href="cddefines_8cpp.html#a138c2d35a9db547dc6017c3ab69d3989">nzone</a></div><div class="ttdeci">long int nzone</div><div class="ttdef"><b>Definition:</b> <a href="cddefines_8cpp_source.html#l00014">cddefines.cpp:14</a></div></div>
<div class="ttc" id="iso_8h_html_a05145858be8bbb74930ebd32eb157bd4"><div class="ttname"><a href="iso_8h.html#a05145858be8bbb74930ebd32eb157bd4">ipHe1s1S</a></div><div class="ttdeci">const int ipHe1s1S</div><div class="ttdef"><b>Definition:</b> <a href="iso_8h_source.html#l00041">iso.h:41</a></div></div>
<div class="ttc" id="opacity_8h_html"><div class="ttname"><a href="opacity_8h.html">opacity.h</a></div></div>
<div class="ttc" id="classmolezone_html"><div class="ttname"><a href="classmolezone.html">molezone</a></div><div class="ttdef"><b>Definition:</b> <a href="mole_8h_source.html#l00364">mole.h:364</a></div></div>
<div class="ttc" id="opacity_8h_html_ad23d4cd39b5a583c0fcb2f84dba06671"><div class="ttname"><a href="opacity_8h.html#ad23d4cd39b5a583c0fcb2f84dba06671">OpacityAdd1Subshell</a></div><div class="ttdeci">void OpacityAdd1Subshell(long int ipOpac, long int ipLowLim, long int ipUpLim, realnum abundance, char chStat)</div><div class="ttdef"><b>Definition:</b> <a href="opacity__add1subshell_8cpp_source.html#l00010">opacity_add1subshell.cpp:10</a></div></div>
<div class="ttc" id="structt__opac_html_ad41da16dc1a68d150949bd12bab88e6f"><div class="ttname"><a href="structt__opac.html#ad41da16dc1a68d150949bd12bab88e6f">t_opac::ipBrems</a></div><div class="ttdeci">long int ipBrems</div><div class="ttdef"><b>Definition:</b> <a href="opacity_8h_source.html#l00210">opacity.h:210</a></div></div>
<div class="ttc" id="classt__iso__sp_html_a49b0d99041ca89e13275cc33d326defd"><div class="ttname"><a href="classt__iso__sp.html#a49b0d99041ca89e13275cc33d326defd">t_iso_sp::fb</a></div><div class="ttdeci">vector< freeBound > fb</div><div class="ttdef"><b>Definition:</b> <a href="iso_8h_source.html#l00452">iso.h:452</a></div></div>
<div class="ttc" id="structt__opac_html_a4bd293b8d19d0c3ddf416687cfca4c32"><div class="ttname"><a href="structt__opac.html#a4bd293b8d19d0c3ddf416687cfca4c32">t_opac::ica2op</a></div><div class="ttdeci">long int ica2op</div><div class="ttdef"><b>Definition:</b> <a href="opacity_8h_source.html#l00210">opacity.h:210</a></div></div>
<div class="ttc" id="structt__dense_html_a9f73720f209b1536b1d32300b52a9845"><div class="ttname"><a href="structt__dense.html#a9f73720f209b1536b1d32300b52a9845">t_dense::xIonDense</a></div><div class="ttdeci">double xIonDense[LIMELM][LIMELM+1]</div><div class="ttdef"><b>Definition:</b> <a href="dense_8h_source.html#l00125">dense.h:125</a></div></div>
<div class="ttc" id="structt__opac_html_afabd1dcea7e40cf8470f15cf207eb935"><div class="ttname"><a href="structt__opac.html#afabd1dcea7e40cf8470f15cf207eb935">t_opac::iphmra</a></div><div class="ttdeci">long int iphmra</div><div class="ttdef"><b>Definition:</b> <a href="opacity_8h_source.html#l00210">opacity.h:210</a></div></div>
<div class="ttc" id="ipoint_8h_html"><div class="ttname"><a href="ipoint_8h.html">ipoint.h</a></div></div>
<div class="ttc" id="ca_8cpp_html_a8a051a95b5db49811d7600ff4ad3df44"><div class="ttname"><a href="ca_8cpp.html#a8a051a95b5db49811d7600ff4ad3df44">ca</a></div><div class="ttdeci">t_ca ca</div><div class="ttdef"><b>Definition:</b> <a href="ca_8cpp_source.html#l00005">ca.cpp:5</a></div></div>
<div class="ttc" id="structt__opac_html_a4e5c6c0fade41a1dc45218f1581c580a"><div class="ttname"><a href="structt__opac.html#a4e5c6c0fade41a1dc45218f1581c580a">t_opac::ipmgex</a></div><div class="ttdeci">long int ipmgex</div><div class="ttdef"><b>Definition:</b> <a href="opacity_8h_source.html#l00210">opacity.h:210</a></div></div>
<div class="ttc" id="iso_8cpp_html_ab57c2051ee65e0236231a59103b5e80c"><div class="ttname"><a href="iso_8cpp.html#ab57c2051ee65e0236231a59103b5e80c">iso_sp</a></div><div class="ttdeci">t_iso_sp iso_sp[NISO][LIMELM]</div><div class="ttdef"><b>Definition:</b> <a href="iso_8cpp_source.html#l00008">iso.cpp:8</a></div></div>
<div class="ttc" id="class_grain_var_html_a3dd47adcce59052c2093266d3aa16b75"><div class="ttname"><a href="class_grain_var.html#a3dd47adcce59052c2093266d3aa16b75">GrainVar::dstsc</a></div><div class="ttdeci">vector< double > dstsc</div><div class="ttdef"><b>Definition:</b> <a href="grainvar_8h_source.html#l00525">grainvar.h:525</a></div></div>
<div class="ttc" id="structt__rfield_html_a57a59f4332c3c102a7b5bb7daad314f8"><div class="ttname"><a href="structt__rfield.html#a57a59f4332c3c102a7b5bb7daad314f8">t_rfield::nupper</a></div><div class="ttdeci">long int nupper</div><div class="ttdef"><b>Definition:</b> <a href="rfield_8h_source.html#l00046">rfield.h:46</a></div></div>
<div class="ttc" id="structt__opac_html_a0f168375d05ae39e749321590d064776"><div class="ttname"><a href="structt__opac.html#a0f168375d05ae39e749321590d064776">t_opac::ica2ex</a></div><div class="ttdeci">long int ica2ex[2]</div><div class="ttdef"><b>Definition:</b> <a href="opacity_8h_source.html#l00210">opacity.h:210</a></div></div>
<div class="ttc" id="structt__rfield_html_a829624ca3f688f0e4217bb4b9a44d514"><div class="ttname"><a href="structt__rfield.html#a829624ca3f688f0e4217bb4b9a44d514">t_rfield::otslin</a></div><div class="ttdeci">realnum * otslin</div><div class="ttdef"><b>Definition:</b> <a href="rfield_8h_source.html#l00193">rfield.h:193</a></div></div>
<div class="ttc" id="structt__conv_html_af927d37582560e64e2a55704f18aab0b"><div class="ttname"><a href="structt__conv.html#af927d37582560e64e2a55704f18aab0b">t_conv::lgSearch</a></div><div class="ttdeci">bool lgSearch</div><div class="ttdef"><b>Definition:</b> <a href="conv_8h_source.html#l00175">conv.h:175</a></div></div>
<div class="ttc" id="trace_8cpp_html_a093b5dbeadd21d8c1a95fe9d23ab5b72"><div class="ttname"><a href="trace_8cpp.html#a093b5dbeadd21d8c1a95fe9d23ab5b72">trace</a></div><div class="ttdeci">t_trace trace</div><div class="ttdef"><b>Definition:</b> <a href="trace_8cpp_source.html#l00005">trace.cpp:5</a></div></div>
<div class="ttc" id="cddefines_8h_html_a39581ccdcc8104b3f1b7cd4c51b33866"><div class="ttname"><a href="cddefines_8h.html#a39581ccdcc8104b3f1b7cd4c51b33866">MALLOC</a></div><div class="ttdeci">#define MALLOC(exp)</div><div class="ttdef"><b>Definition:</b> <a href="cddefines_8h_source.html#l00505">cddefines.h:505</a></div></div>
<div class="ttc" id="taulines_8h_html"><div class="ttname"><a href="taulines_8h.html">taulines.h</a></div></div>
<div class="ttc" id="ionbal_8cpp_html_a360ea90b4c4f87f220b366907da0a2be"><div class="ttname"><a href="ionbal_8cpp.html#a360ea90b4c4f87f220b366907da0a2be">ionbal</a></div><div class="ttdeci">t_ionbal ionbal</div><div class="ttdef"><b>Definition:</b> <a href="ionbal_8cpp_source.html#l00005">ionbal.cpp:5</a></div></div>
<div class="ttc" id="cont__ipoint_8cpp_html_a5aa9a7bebc355f0cbceb7b411280d6dd"><div class="ttname"><a href="cont__ipoint_8cpp.html#a5aa9a7bebc355f0cbceb7b411280d6dd">ipoint</a></div><div class="ttdeci">long ipoint(double energy_ryd)</div><div class="ttdef"><b>Definition:</b> <a href="cont__ipoint_8cpp_source.html#l00016">cont_ipoint.cpp:16</a></div></div>
<div class="ttc" id="structt__oxy_html_a47365b83c8d69ab795285b6942375791"><div class="ttname"><a href="structt__oxy.html#a47365b83c8d69ab795285b6942375791">t_oxy::poiii3</a></div><div class="ttdeci">realnum poiii3</div><div class="ttdef"><b>Definition:</b> <a href="oxy_8h_source.html#l00009">oxy.h:9</a></div></div>
<div class="ttc" id="cddefines_8h_html_a640dbf4a86409e02d9103d713bd54936"><div class="ttname"><a href="cddefines_8h.html#a640dbf4a86409e02d9103d713bd54936">POW2</a></div><div class="ttdeci">#define POW2</div><div class="ttdef"><b>Definition:</b> <a href="cddefines_8h_source.html#l00933">cddefines.h:933</a></div></div>
<div class="ttc" id="iso_8h_html_a1c4a2ccd8a77c449fcf2ec2eb4561c22"><div class="ttname"><a href="iso_8h.html#a1c4a2ccd8a77c449fcf2ec2eb4561c22">ipH1s</a></div><div class="ttdeci">const int ipH1s</div><div class="ttdef"><b>Definition:</b> <a href="iso_8h_source.html#l00027">iso.h:27</a></div></div>
<div class="ttc" id="structt__conv_html_a76e51cc29029953ab465d03b07364c7d"><div class="ttname"><a href="structt__conv.html#a76e51cc29029953ab465d03b07364c7d">t_conv::nPres2Ioniz</a></div><div class="ttdeci">long int nPres2Ioniz</div><div class="ttdef"><b>Definition:</b> <a href="conv_8h_source.html#l00152">conv.h:152</a></div></div>
<div class="ttc" id="structt__trace_html_a8dda16a4d173d21317786ab5b9f440db"><div class="ttname"><a href="structt__trace.html#a8dda16a4d173d21317786ab5b9f440db">t_trace::lgTrace</a></div><div class="ttdeci">bool lgTrace</div><div class="ttdef"><b>Definition:</b> <a href="trace_8h_source.html#l00012">trace.h:12</a></div></div>
<div class="ttc" id="opacity_8h_html_afbd4726aca948ee46517cb437c3efe0c"><div class="ttname"><a href="opacity_8h.html#afbd4726aca948ee46517cb437c3efe0c">OpacityZeroOld</a></div><div class="ttdeci">void OpacityZeroOld(void)</div><div class="ttdef"><b>Definition:</b> <a href="opacity__zero_8cpp_source.html#l00037">opacity_zero.cpp:37</a></div></div>
<div class="ttc" id="iso_8h_html"><div class="ttname"><a href="iso_8h.html">iso.h</a></div></div>
<div class="ttc" id="mole_8cpp_html_a90c9c6b26e8a16663379c335308e6c6a"><div class="ttname"><a href="mole_8cpp.html#a90c9c6b26e8a16663379c335308e6c6a">mole</a></div><div class="ttdeci">t_mole_local mole</div><div class="ttdef"><b>Definition:</b> <a href="mole_8cpp_source.html#l00007">mole.cpp:7</a></div></div>
<div class="ttc" id="rfield_8cpp_html_ae577590833d90679b27a7e2b237ee667"><div class="ttname"><a href="rfield_8cpp.html#ae577590833d90679b27a7e2b237ee667">rfield</a></div><div class="ttdeci">t_rfield rfield</div><div class="ttdef"><b>Definition:</b> <a href="rfield_8cpp_source.html#l00008">rfield.cpp:8</a></div></div>
<div class="ttc" id="opacity_8h_html_a8e27634bc5c92104307c7e94ec0e0dc6"><div class="ttname"><a href="opacity_8h.html#a8e27634bc5c92104307c7e94ec0e0dc6">OpacityAddTotal</a></div><div class="ttdeci">void OpacityAddTotal(void)</div><div class="ttdef"><b>Definition:</b> <a href="opacity__addtotal_8cpp_source.html#l00027">opacity_addtotal.cpp:27</a></div></div>
<div class="ttc" id="atoms_8cpp_html_a7eb6de657f28e8be348c77a33a59e768"><div class="ttname"><a href="atoms_8cpp.html#a7eb6de657f28e8be348c77a33a59e768">atoms</a></div><div class="ttdeci">t_atoms atoms</div><div class="ttdef"><b>Definition:</b> <a href="atoms_8cpp_source.html#l00005">atoms.cpp:5</a></div></div>
<div class="ttc" id="h2__priv_8h_html"><div class="ttname"><a href="h2__priv_8h.html">h2_priv.h</a></div></div>
<div class="ttc" id="cddefines_8h_html_a9aeda5ccf905f7d5241c0fe35434c820"><div class="ttname"><a href="cddefines_8h.html#a9aeda5ccf905f7d5241c0fe35434c820">realnum</a></div><div class="ttdeci">float realnum</div><div class="ttdef"><b>Definition:</b> <a href="cddefines_8h_source.html#l00107">cddefines.h:107</a></div></div>
<div class="ttc" id="classt__mole__local_html_abe569d0d6105cb9c956783709b969307"><div class="ttname"><a href="classt__mole__local.html#abe569d0d6105cb9c956783709b969307">t_mole_local::species</a></div><div class="ttdeci">valarray< class molezone > species</div><div class="ttdef"><b>Definition:</b> <a href="mole_8h_source.html#l00355">mole.h:355</a></div></div>
<div class="ttc" id="cddefines_8h_html_a73efe787c131b385070f25d18b7c9aa4"><div class="ttname"><a href="cddefines_8h.html#a73efe787c131b385070f25d18b7c9aa4">EXIT_FAILURE</a></div><div class="ttdeci">#define EXIT_FAILURE</div><div class="ttdef"><b>Definition:</b> <a href="cddefines_8h_source.html#l00144">cddefines.h:144</a></div></div>
<div class="ttc" id="grainvar_8h_html"><div class="ttname"><a href="grainvar_8h.html">grainvar.h</a></div></div>
<div class="ttc" id="iso_8h_html_a31f2f60d7eada9b7b14e1cb90c26069f"><div class="ttname"><a href="iso_8h.html#a31f2f60d7eada9b7b14e1cb90c26069f">ipH4p</a></div><div class="ttdeci">const int ipH4p</div><div class="ttdef"><b>Definition:</b> <a href="iso_8h_source.html#l00034">iso.h:34</a></div></div>
<div class="ttc" id="structt__opac_html_a92e316b4ce53196cf579a0d66bc0ffea"><div class="ttname"><a href="structt__opac.html#a92e316b4ce53196cf579a0d66bc0ffea">t_opac::iopcom</a></div><div class="ttdeci">long int iopcom</div><div class="ttdef"><b>Definition:</b> <a href="opacity_8h_source.html#l00210">opacity.h:210</a></div></div>
<div class="ttc" id="h2_8cpp_html_acebab186cf3c20150eb67c5505c4433e"><div class="ttname"><a href="h2_8cpp.html#acebab186cf3c20150eb67c5505c4433e">diatoms</a></div><div class="ttdeci">vector< diatomics * > diatoms</div><div class="ttdef"><b>Definition:</b> <a href="h2_8cpp_source.html#l00008">h2.cpp:8</a></div></div>
<div class="ttc" id="structt__dense_html_a25e609b78edbf673f25bc6b68a1c7af1"><div class="ttname"><a href="structt__dense.html#a25e609b78edbf673f25bc6b68a1c7af1">t_dense::lgElmtOn</a></div><div class="ttdeci">bool lgElmtOn[LIMELM]</div><div class="ttdef"><b>Definition:</b> <a href="dense_8h_source.html#l00146">dense.h:146</a></div></div>
<div class="ttc" id="hydrogenic_8cpp_html_a6d5e2db5bdac5086ba42a060287d6b5e"><div class="ttname"><a href="hydrogenic_8cpp.html#a6d5e2db5bdac5086ba42a060287d6b5e">hydro</a></div><div class="ttdeci">t_hydro hydro</div><div class="ttdef"><b>Definition:</b> <a href="hydrogenic_8cpp_source.html#l00005">hydrogenic.cpp:5</a></div></div>
<div class="ttc" id="structt__rfield_html_a735b29ffacb54591ae2c8ca8bccff1b6"><div class="ttname"><a href="structt__rfield.html#a735b29ffacb54591ae2c8ca8bccff1b6">t_rfield::otscon</a></div><div class="ttdeci">realnum * otscon</div><div class="ttdef"><b>Definition:</b> <a href="rfield_8h_source.html#l00193">rfield.h:193</a></div></div>
<div class="ttc" id="cddefines_8h_html_a937636e18a3a517d1aeb2c111adb5160"><div class="ttname"><a href="cddefines_8h.html#a937636e18a3a517d1aeb2c111adb5160">cdEXIT</a></div><div class="ttdeci">#define cdEXIT(FAIL)</div><div class="ttdef"><b>Definition:</b> <a href="cddefines_8h_source.html#l00438">cddefines.h:438</a></div></div>
<div class="ttc" id="classdiatomics_html_a287f3b9f271bb04b66d84506daca29ab"><div class="ttname"><a href="classdiatomics.html#a287f3b9f271bb04b66d84506daca29ab">diatomics::ip_photo_opac_offset</a></div><div class="ttdeci">long ip_photo_opac_offset</div><div class="ttdef"><b>Definition:</b> <a href="h2__priv_8h_source.html#l00311">h2_priv.h:311</a></div></div>
<div class="ttc" id="conv_8h_html"><div class="ttname"><a href="conv_8h.html">conv.h</a></div></div>
<div class="ttc" id="structt__rfield_html_ac936125b75f9726c50fa0b11ccb6ea19"><div class="ttname"><a href="structt__rfield.html#ac936125b75f9726c50fa0b11ccb6ea19">t_rfield::ContBoltz</a></div><div class="ttdeci">double * ContBoltz</div><div class="ttdef"><b>Definition:</b> <a href="rfield_8h_source.html#l00145">rfield.h:145</a></div></div>
<div class="ttc" id="ionbal_8h_html"><div class="ttname"><a href="ionbal_8h.html">ionbal.h</a></div></div>
<div class="ttc" id="h2_8cpp_html_abdb9830c1e377d61cfc1cf1f73169ffe"><div class="ttname"><a href="h2_8cpp.html#abdb9830c1e377d61cfc1cf1f73169ffe">h2</a></div><div class="ttdeci">diatomics h2("h2", 4100.,&hmi.H2_total, Yan_H2_CS)</div></div>
<div class="ttc" id="iso_8h_html_a4767af59d78503d388ecd1014e2e1cc1"><div class="ttname"><a href="iso_8h.html#a4767af59d78503d388ecd1014e2e1cc1">ipH3s</a></div><div class="ttdeci">const int ipH3s</div><div class="ttdef"><b>Definition:</b> <a href="iso_8h_source.html#l00030">iso.h:30</a></div></div>
<div class="ttc" id="structt__opac_html_a8fea432c23f0624ca935f7a7913ebf05"><div class="ttname"><a href="structt__opac.html#a8fea432c23f0624ca935f7a7913ebf05">t_opac::iphmop</a></div><div class="ttdeci">long int iphmop</div><div class="ttdef"><b>Definition:</b> <a href="opacity_8h_source.html#l00210">opacity.h:210</a></div></div>
<div class="ttc" id="iso_8h_html_abc58c6fefd4cd5445c917adbbcd9c5b0"><div class="ttname"><a href="iso_8h.html#abc58c6fefd4cd5445c917adbbcd9c5b0">ipH3d</a></div><div class="ttdeci">const int ipH3d</div><div class="ttdef"><b>Definition:</b> <a href="iso_8h_source.html#l00032">iso.h:32</a></div></div>
<div class="ttc" id="structt__opac_html_a09fb5ca4cea902a5dfa2e2309c8579d2"><div class="ttname"><a href="structt__opac.html#a09fb5ca4cea902a5dfa2e2309c8579d2">t_opac::ioppr</a></div><div class="ttdeci">long int ioppr</div><div class="ttdef"><b>Definition:</b> <a href="opacity_8h_source.html#l00210">opacity.h:210</a></div></div>
<div class="ttc" id="hmi_8h_html"><div class="ttname"><a href="hmi_8h.html">hmi.h</a></div></div>
<div class="ttc" id="structt__dense_html_ac3103e7dcf065b405339072b2c833328"><div class="ttname"><a href="structt__dense.html#ac3103e7dcf065b405339072b2c833328">t_dense::gas_phase</a></div><div class="ttdeci">realnum gas_phase[LIMELM]</div><div class="ttdef"><b>Definition:</b> <a href="dense_8h_source.html#l00071">dense.h:71</a></div></div>
<div class="ttc" id="iso_8h_html_a63acd79d87d47a44d38d8cc1b4239c48"><div class="ttname"><a href="iso_8h.html#a63acd79d87d47a44d38d8cc1b4239c48">ipH2p</a></div><div class="ttdeci">const int ipH2p</div><div class="ttdef"><b>Definition:</b> <a href="iso_8h_source.html#l00029">iso.h:29</a></div></div>
<div class="ttc" id="structt__opac_html_abc4ce81e425adcaf71f125df7c13fceb"><div class="ttname"><a href="structt__opac.html#abc4ce81e425adcaf71f125df7c13fceb">t_opac::ipOpMgEx</a></div><div class="ttdeci">long int ipOpMgEx</div><div class="ttdef"><b>Definition:</b> <a href="opacity_8h_source.html#l00210">opacity.h:210</a></div></div>
<div class="ttc" id="structt__opac_html_a1a906a676ec79e3fdf22d80f1f81747b"><div class="ttname"><a href="structt__opac.html#a1a906a676ec79e3fdf22d80f1f81747b">t_opac::ipo3exc3</a></div><div class="ttdeci">long int ipo3exc3[3]</div><div class="ttdef"><b>Definition:</b> <a href="opacity_8h_source.html#l00210">opacity.h:210</a></div></div>
<div class="ttc" id="cddefines_8h_html_a092bd7bb2cb7fd9f483b6995cee61bc0"><div class="ttname"><a href="cddefines_8h.html#a092bd7bb2cb7fd9f483b6995cee61bc0">ASSERT</a></div><div class="ttdeci">#define ASSERT(exp)</div><div class="ttdef"><b>Definition:</b> <a href="cddefines_8h_source.html#l00582">cddefines.h:582</a></div></div>
<div class="ttc" id="structt__rfield_html_ab80ba75cc614c2e11602c627ccb068a5"><div class="ttname"><a href="structt__rfield.html#ab80ba75cc614c2e11602c627ccb068a5">t_rfield::anu</a></div><div class="ttdeci">double * anu</div><div class="ttdef"><b>Definition:</b> <a href="rfield_8h_source.html#l00058">rfield.h:58</a></div></div>
<div class="ttc" id="structt__opac_html_ada0f2e0737a757c09b20081b947702cb"><div class="ttname"><a href="structt__opac.html#ada0f2e0737a757c09b20081b947702cb">t_opac::ippr</a></div><div class="ttdeci">long int ippr</div><div class="ttdef"><b>Definition:</b> <a href="opacity_8h_source.html#l00210">opacity.h:210</a></div></div>
<div class="ttc" id="iso_8h_html_ac423e56cf6f601b2e248c16bafac9ba4"><div class="ttname"><a href="iso_8h.html#ac423e56cf6f601b2e248c16bafac9ba4">ipH2s</a></div><div class="ttdeci">const int ipH2s</div><div class="ttdef"><b>Definition:</b> <a href="iso_8h_source.html#l00028">iso.h:28</a></div></div>
<div class="ttc" id="structt__atoms_html_a3a9a3924617b4a8a9fbf69653aeb8f4a"><div class="ttname"><a href="structt__atoms.html#a3a9a3924617b4a8a9fbf69653aeb8f4a">t_atoms::p2nit</a></div><div class="ttdeci">realnum p2nit</div><div class="ttdef"><b>Definition:</b> <a href="atoms_8h_source.html#l00242">atoms.h:242</a></div></div>
<div class="ttc" id="cddefines_8h_html_a20d695fc47a08766dbf4bd20c138a9f5"><div class="ttname"><a href="cddefines_8h.html#a20d695fc47a08766dbf4bd20c138a9f5">ipNITROGEN</a></div><div class="ttdeci">const int ipNITROGEN</div><div class="ttdef"><b>Definition:</b> <a href="cddefines_8h_source.html#l00315">cddefines.h:315</a></div></div>
<div class="ttc" id="iso_8h_html_ac9adcc2e25a84dbcfaf67a9753504f29"><div class="ttname"><a href="iso_8h.html#ac9adcc2e25a84dbcfaf67a9753504f29">ipH_LIKE</a></div><div class="ttdeci">const int ipH_LIKE</div><div class="ttdef"><b>Definition:</b> <a href="iso_8h_source.html#l00062">iso.h:62</a></div></div>
<div class="ttc" id="cddefines_8h_html_a017f14ae326d77fc4c2ba77293ac75aa"><div class="ttname"><a href="cddefines_8h.html#a017f14ae326d77fc4c2ba77293ac75aa">csphot</a></div><div class="ttdeci">double csphot(long int inu, long int ithr, long int iofset)</div><div class="ttdef"><b>Definition:</b> <a href="service_8cpp_source.html#l01602">service.cpp:1602</a></div></div>
<div class="ttc" id="cddefines_8h_html"><div class="ttname"><a href="cddefines_8h.html">cddefines.h</a></div></div>
<div class="ttc" id="cddefines_8h_html_a625741fe64429312469751842aab8216"><div class="ttname"><a href="cddefines_8h.html#a625741fe64429312469751842aab8216">LIMELM</a></div><div class="ttdeci">const int LIMELM</div><div class="ttdef"><b>Definition:</b> <a href="cddefines_8h_source.html#l00262">cddefines.h:262</a></div></div>
<div class="ttc" id="structt__oxy_html_a748a384900878a63dab24920dfbea2f4"><div class="ttname"><a href="structt__oxy.html#a748a384900878a63dab24920dfbea2f4">t_oxy::poiii2</a></div><div class="ttdeci">realnum poiii2</div><div class="ttdef"><b>Definition:</b> <a href="oxy_8h_source.html#l00009">oxy.h:9</a></div></div>
<div class="ttc" id="structt__hmi_html_a81e13835fd7dab29ea45e9b42213f82a"><div class="ttname"><a href="structt__hmi.html#a81e13835fd7dab29ea45e9b42213f82a">t_hmi::hmidep</a></div><div class="ttdeci">double hmidep</div><div class="ttdef"><b>Definition:</b> <a href="hmi_8h_source.html#l00033">hmi.h:33</a></div></div>
<div class="ttc" id="structt__atoms_html_a840dac94edbfd2a1ac33ee8412ce9fe3"><div class="ttname"><a href="structt__atoms.html#a840dac94edbfd2a1ac33ee8412ce9fe3">t_atoms::popmg2</a></div><div class="ttdeci">realnum popmg2</div><div class="ttdef"><b>Definition:</b> <a href="atoms_8h_source.html#l00260">atoms.h:260</a></div></div>
<div class="ttc" id="classmolezone_html_a49a86bc44599abacd2eb714471ca464d"><div class="ttname"><a href="classmolezone.html#a49a86bc44599abacd2eb714471ca464d">molezone::den</a></div><div class="ttdeci">double den</div><div class="ttdef"><b>Definition:</b> <a href="mole_8h_source.html#l00396">mole.h:396</a></div></div>
<div class="ttc" id="structt__oxy_html_ae66deb31745f8821d23aa18b6b69b578"><div class="ttname"><a href="structt__oxy.html#ae66deb31745f8821d23aa18b6b69b578">t_oxy::poiexc</a></div><div class="ttdeci">realnum poiexc</div><div class="ttdef"><b>Definition:</b> <a href="oxy_8h_source.html#l00009">oxy.h:9</a></div></div>
<div class="ttc" id="cddefines_8h_html_ada0cfa6927ba3683adc971d17643f2e5"><div class="ttname"><a href="cddefines_8h.html#ada0cfa6927ba3683adc971d17643f2e5">DEBUG_ENTRY</a></div><div class="ttdeci">#define DEBUG_ENTRY(funcname)</div><div class="ttdef"><b>Definition:</b> <a href="cddefines_8h_source.html#l00688">cddefines.h:688</a></div></div>
<div class="ttc" id="cddefines_8h_html_a075c8459d7e501109174c1a2fdc5cd7e"><div class="ttname"><a href="cddefines_8h.html#a075c8459d7e501109174c1a2fdc5cd7e">isnan</a></div><div class="ttdeci">#define isnan</div><div class="ttdef"><b>Definition:</b> <a href="cddefines_8h_source.html#l00624">cddefines.h:624</a></div></div>
<div class="ttc" id="cddefines_8h_html_a998e102b7d6537d3ef5200647c4b8559"><div class="ttname"><a href="cddefines_8h.html#a998e102b7d6537d3ef5200647c4b8559">ipHELIUM</a></div><div class="ttdeci">const int ipHELIUM</div><div class="ttdef"><b>Definition:</b> <a href="cddefines_8h_source.html#l00310">cddefines.h:310</a></div></div>
<div class="ttc" id="structt__opac_html_ab8b4162939ba02ba2ad298f8e087107c"><div class="ttname"><a href="structt__opac.html#ab8b4162939ba02ba2ad298f8e087107c">t_opac::FreeFreeOpacity</a></div><div class="ttdeci">double * FreeFreeOpacity</div><div class="ttdef"><b>Definition:</b> <a href="opacity_8h_source.html#l00117">opacity.h:117</a></div></div>
<div class="ttc" id="structt__opac_html_addee82e65d31cb4f6517422d05b7b5ac"><div class="ttname"><a href="structt__opac.html#addee82e65d31cb4f6517422d05b7b5ac">t_opac::in1</a></div><div class="ttdeci">long int in1[3]</div><div class="ttdef"><b>Definition:</b> <a href="opacity_8h_source.html#l00210">opacity.h:210</a></div></div>
<div class="ttc" id="structt__hmi_html_a779920c75e30c622fc3924c51148bae2"><div class="ttname"><a href="structt__hmi.html#a779920c75e30c622fc3924c51148bae2">t_hmi::H2_total</a></div><div class="ttdeci">double H2_total</div><div class="ttdef"><b>Definition:</b> <a href="hmi_8h_source.html#l00016">hmi.h:16</a></div></div>
<div class="ttc" id="structt__dense_html_a1adb121fb092a05193c82bccf4f47bb7"><div class="ttname"><a href="structt__dense.html#a1adb121fb092a05193c82bccf4f47bb7">t_dense::eden</a></div><div class="ttdeci">double eden</div><div class="ttdef"><b>Definition:</b> <a href="dense_8h_source.html#l00190">dense.h:190</a></div></div>
<div class="ttc" id="oxy_8cpp_html_a75e93f94e63545b5d0800a5ec8d7eec1"><div class="ttname"><a href="oxy_8cpp.html#a75e93f94e63545b5d0800a5ec8d7eec1">oxy</a></div><div class="ttdeci">t_oxy oxy</div><div class="ttdef"><b>Definition:</b> <a href="oxy_8cpp_source.html#l00005">oxy.cpp:5</a></div></div>
<div class="ttc" id="mole_8h_html"><div class="ttname"><a href="mole_8h.html">mole.h</a></div></div>
<div class="ttc" id="classt__mole__global_html_ac95a58f6eb8ca5e805a47b7ebe1915fb"><div class="ttname"><a href="classt__mole__global.html#ac95a58f6eb8ca5e805a47b7ebe1915fb">t_mole_global::list</a></div><div class="ttdeci">MoleculeList list</div><div class="ttdef"><b>Definition:</b> <a href="mole_8h_source.html#l00317">mole.h:317</a></div></div>
<div class="ttc" id="iso_8h_html_a85c550a686f23a5012e9da00bb59f2de"><div class="ttname"><a href="iso_8h.html#a85c550a686f23a5012e9da00bb59f2de">ipH4s</a></div><div class="ttdeci">const int ipH4s</div><div class="ttdef"><b>Definition:</b> <a href="iso_8h_source.html#l00033">iso.h:33</a></div></div>
<div class="ttc" id="cddefines_8h_html_a3103755d21f14edff23629e64424dcfa"><div class="ttname"><a href="cddefines_8h.html#a3103755d21f14edff23629e64424dcfa">ipCARBON</a></div><div class="ttdeci">const int ipCARBON</div><div class="ttdef"><b>Definition:</b> <a href="cddefines_8h_source.html#l00314">cddefines.h:314</a></div></div>
<div class="ttc" id="structt__phycon_html_a83c3efba125ab61bce8a10180c7ff839"><div class="ttname"><a href="structt__phycon.html#a83c3efba125ab61bce8a10180c7ff839">t_phycon::sqrte</a></div><div class="ttdeci">double sqrte</div><div class="ttdef"><b>Definition:</b> <a href="phycon_8h_source.html#l00048">phycon.h:48</a></div></div>
<div class="ttc" id="structt__opac_html_aae73709f2f5655524acd6e764141aae4"><div class="ttname"><a href="structt__opac.html#aae73709f2f5655524acd6e764141aae4">t_opac::ih2pnt</a></div><div class="ttdeci">long int ih2pnt[2]</div><div class="ttdef"><b>Definition:</b> <a href="opacity_8h_source.html#l00210">opacity.h:210</a></div></div>
<div class="ttc" id="rfield_8h_html"><div class="ttname"><a href="rfield_8h.html">rfield.h</a></div></div>
<div class="ttc" id="grainvar_8cpp_html_aa3d184f120b9ea3390c44f009e9c74f6"><div class="ttname"><a href="grainvar_8cpp.html#aa3d184f120b9ea3390c44f009e9c74f6">gv</a></div><div class="ttdeci">GrainVar gv</div><div class="ttdef"><b>Definition:</b> <a href="grainvar_8cpp_source.html#l00005">grainvar.cpp:5</a></div></div>
<div class="ttc" id="hmi_8cpp_html_a79a7316378697465da74ad5093bdb950"><div class="ttname"><a href="hmi_8cpp.html#a79a7316378697465da74ad5093bdb950">hmi</a></div><div class="ttdeci">t_hmi hmi</div><div class="ttdef"><b>Definition:</b> <a href="hmi_8cpp_source.html#l00005">hmi.cpp:5</a></div></div>
<div class="ttc" id="physconst_8h_html"><div class="ttname"><a href="physconst_8h.html">physconst.h</a></div></div>
<div class="ttc" id="structt__phycon_html_a38484680d6075e5c0ba33fab1e514fee"><div class="ttname"><a href="structt__phycon.html#a38484680d6075e5c0ba33fab1e514fee">t_phycon::te</a></div><div class="ttdeci">double te</div><div class="ttdef"><b>Definition:</b> <a href="phycon_8h_source.html#l00011">phycon.h:11</a></div></div>
<div class="ttc" id="class_grain_var_html_ab75fb260b945f4855c1d95ae9f18e3a4"><div class="ttname"><a href="class_grain_var.html#ab75fb260b945f4855c1d95ae9f18e3a4">GrainVar::lgDustOn</a></div><div class="ttdeci">bool lgDustOn() const </div><div class="ttdef"><b>Definition:</b> <a href="grainvar_8h_source.html#l00471">grainvar.h:471</a></div></div>
<div class="ttc" id="cddefines_8h_html_ad230dc2b848c4445597e35b10e37bb74"><div class="ttname"><a href="cddefines_8h.html#ad230dc2b848c4445597e35b10e37bb74">ipHYDROGEN</a></div><div class="ttdeci">const int ipHYDROGEN</div><div class="ttdef"><b>Definition:</b> <a href="cddefines_8h_source.html#l00309">cddefines.h:309</a></div></div>
<div class="ttc" id="cddefines_8h_html_af99f8430a8e7473900be47771ebf7ae8"><div class="ttname"><a href="cddefines_8h.html#af99f8430a8e7473900be47771ebf7ae8">fixit</a></div><div class="ttdeci">void fixit(void)</div><div class="ttdef"><b>Definition:</b> <a href="service_8cpp_source.html#l00991">service.cpp:991</a></div></div>
<div class="ttc" id="structt__rfield_html_aa61dca00b142fadf1b2013c670c6184c"><div class="ttname"><a href="structt__rfield.html#aa61dca00b142fadf1b2013c670c6184c">t_rfield::nflux</a></div><div class="ttdeci">long int nflux</div><div class="ttdef"><b>Definition:</b> <a href="rfield_8h_source.html#l00043">rfield.h:43</a></div></div>
<div class="ttc" id="iso_8h_html_a0ed40aad8c7e38f118e1fac6063aef66"><div class="ttname"><a href="iso_8h.html#a0ed40aad8c7e38f118e1fac6063aef66">ipH3p</a></div><div class="ttdeci">const int ipH3p</div><div class="ttdef"><b>Definition:</b> <a href="iso_8h_source.html#l00031">iso.h:31</a></div></div>
<div class="ttc" id="classt__iso__sp_html_a7051e8642df97b9bab5b72fcbdc297aa"><div class="ttname"><a href="classt__iso__sp.html#a7051e8642df97b9bab5b72fcbdc297aa">t_iso_sp::numLevels_local</a></div><div class="ttdeci">long int numLevels_local</div><div class="ttdef"><b>Definition:</b> <a href="iso_8h_source.html#l00498">iso.h:498</a></div></div>
<div class="ttc" id="iso_8h_html_aa921e0e059cb9306bb2db94a308de043"><div class="ttname"><a href="iso_8h.html#aa921e0e059cb9306bb2db94a308de043">ipH4f</a></div><div class="ttdeci">const int ipH4f</div><div class="ttdef"><b>Definition:</b> <a href="iso_8h_source.html#l00036">iso.h:36</a></div></div>
<div class="ttc" id="h2_8h_html_a476b56dd515f2d3617e28dc0bc6b2992"><div class="ttname"><a href="h2_8h.html#a476b56dd515f2d3617e28dc0bc6b2992">diatom_iter</a></div><div class="ttdeci">vector< diatomics * >::iterator diatom_iter</div><div class="ttdef"><b>Definition:</b> <a href="h2_8h_source.html#l00013">h2.h:13</a></div></div>
<div class="ttc" id="opacity_8h_html_a74fb058042e605311c90f0af8d623455"><div class="ttname"><a href="opacity_8h.html#a74fb058042e605311c90f0af8d623455">OpacityZero</a></div><div class="ttdeci">void OpacityZero(void)</div><div class="ttdef"><b>Definition:</b> <a href="opacity__zero_8cpp_source.html#l00008">opacity_zero.cpp:8</a></div></div>
<div class="ttc" id="classt__ionbal_html_a4a2d81dfba8c762010f839275de46b6a"><div class="ttname"><a href="classt__ionbal.html#a4a2d81dfba8c762010f839275de46b6a">t_ionbal::ipCompRecoil</a></div><div class="ttdeci">long int ** ipCompRecoil</div><div class="ttdef"><b>Definition:</b> <a href="ionbal_8h_source.html#l00155">ionbal.h:155</a></div></div>
<div class="ttc" id="physconst_8h_html_a0db3a0b9c80b92a0efc50282f0a813a0"><div class="ttname"><a href="physconst_8h.html#a0db3a0b9c80b92a0efc50282f0a813a0">TE1RYD</a></div><div class="ttdeci">const double TE1RYD</div><div class="ttdef"><b>Definition:</b> <a href="physconst_8h_source.html#l00183">physconst.h:183</a></div></div>
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