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<div class="title">optimize_func.cpp</div> </div>
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<a href="optimize__func_8cpp.html">Go to the documentation of this file.</a><div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno"> 1</span> <span class="comment">/* This file is part of Cloudy and is copyright (C)1978-2013 by Gary J. Ferland and</span></div>
<div class="line"><a name="l00002"></a><span class="lineno"> 2</span> <span class="comment"> * others. For conditions of distribution and use see copyright notice in license.txt */</span></div>
<div class="line"><a name="l00003"></a><span class="lineno"> 3</span> <span class="comment">/*optimize_func actual function called during evaluation of optimization run */</span></div>
<div class="line"><a name="l00004"></a><span class="lineno"> 4</span> <span class="preprocessor">#include "<a class="code" href="cddefines_8h.html">cddefines.h</a>"</span></div>
<div class="line"><a name="l00005"></a><span class="lineno"> 5</span> <span class="preprocessor">#include "<a class="code" href="init_8h.html">init.h</a>"</span></div>
<div class="line"><a name="l00006"></a><span class="lineno"> 6</span> <span class="preprocessor">#include "<a class="code" href="lines_8h.html">lines.h</a>"</span></div>
<div class="line"><a name="l00007"></a><span class="lineno"> 7</span> <span class="preprocessor">#include "<a class="code" href="prt_8h.html">prt.h</a>"</span></div>
<div class="line"><a name="l00008"></a><span class="lineno"> 8</span> <span class="preprocessor">#include "<a class="code" href="called_8h.html">called.h</a>"</span></div>
<div class="line"><a name="l00009"></a><span class="lineno"> 9</span> <span class="preprocessor">#include "<a class="code" href="predcont_8h.html">predcont.h</a>"</span></div>
<div class="line"><a name="l00010"></a><span class="lineno"> 10</span> <span class="preprocessor">#include "<a class="code" href="radius_8h.html">radius.h</a>"</span></div>
<div class="line"><a name="l00011"></a><span class="lineno"> 11</span> <span class="preprocessor">#include "<a class="code" href="rfield_8h.html">rfield.h</a>"</span></div>
<div class="line"><a name="l00012"></a><span class="lineno"> 12</span> <span class="preprocessor">#include "<a class="code" href="input_8h.html">input.h</a>"</span></div>
<div class="line"><a name="l00013"></a><span class="lineno"> 13</span> <span class="preprocessor">#include "<a class="code" href="cloudy_8h.html">cloudy.h</a>"</span></div>
<div class="line"><a name="l00014"></a><span class="lineno"> 14</span> <span class="preprocessor">#include "<a class="code" href="cddrive_8h.html">cddrive.h</a>"</span></div>
<div class="line"><a name="l00015"></a><span class="lineno"> 15</span> <span class="preprocessor">#include "<a class="code" href="optimize_8h.html">optimize.h</a>"</span></div>
<div class="line"><a name="l00016"></a><span class="lineno"> 16</span> <span class="preprocessor">#include "<a class="code" href="grid_8h.html">grid.h</a>"</span></div>
<div class="line"><a name="l00017"></a><span class="lineno"> 17</span> <span class="comment">/* used below to derive chi2 */</span></div>
<div class="line"><a name="l00018"></a><span class="lineno"> 18</span> <a class="code" href="cddefines_8h.html#a10b2d890d871e1489bb02b7e70d9bdfb">STATIC</a> <span class="keywordtype">double</span> <a class="code" href="optimize__func_8cpp.html#a7630974ee828b586108aed1f8499337b">chi2_func</a>(<span class="keywordtype">double</span>,<span class="keywordtype">double</span>,<span class="keywordtype">double</span>);</div>
<div class="line"><a name="l00019"></a><span class="lineno"> 19</span> </div>
<div class="line"><a name="l00020"></a><span class="lineno"><a class="line" href="optimize__func_8cpp.html#a9a09240b634559ff33e263cc2207161a"> 20</a></span> <a class="code" href="optimize_8h.html#a5846ad020ddaf38b0a183086a05196bf">chi2_type</a> <a class="code" href="optimize_8h.html#aca3e55fbbb82e671d1786aed89b6c782">optimize_func</a>(<span class="keyword">const</span> <a class="code" href="cddefines_8h.html#a9aeda5ccf905f7d5241c0fe35434c820">realnum</a> param[],</div>
<div class="line"><a name="l00021"></a><span class="lineno"> 21</span>  <span class="keywordtype">int</span> grid_index)</div>
<div class="line"><a name="l00022"></a><span class="lineno"> 22</span> {</div>
<div class="line"><a name="l00023"></a><span class="lineno"> 23</span>  <span class="keyword">const</span> <span class="keywordtype">int</span> MAXCAT = 6;</div>
<div class="line"><a name="l00024"></a><span class="lineno"> 24</span> </div>
<div class="line"><a name="l00025"></a><span class="lineno"> 25</span>  <span class="keyword">static</span> <span class="keyword">const</span> <span class="keywordtype">char</span> name_cat[MAXCAT][13] = </div>
<div class="line"><a name="l00026"></a><span class="lineno"> 26</span>  {</div>
<div class="line"><a name="l00027"></a><span class="lineno"> 27</span>  <span class="stringliteral">"rel flux "</span>,</div>
<div class="line"><a name="l00028"></a><span class="lineno"> 28</span>  <span class="stringliteral">"column dens "</span>,</div>
<div class="line"><a name="l00029"></a><span class="lineno"> 29</span>  <span class="stringliteral">"abs flux "</span>,</div>
<div class="line"><a name="l00030"></a><span class="lineno"> 30</span>  <span class="stringliteral">"mean temp "</span>,</div>
<div class="line"><a name="l00031"></a><span class="lineno"> 31</span>  <span class="stringliteral">"ang diameter"</span>,</div>
<div class="line"><a name="l00032"></a><span class="lineno"> 32</span>  <span class="stringliteral">"photometry "</span></div>
<div class="line"><a name="l00033"></a><span class="lineno"> 33</span>  };</div>
<div class="line"><a name="l00034"></a><span class="lineno"> 34</span> </div>
<div class="line"><a name="l00035"></a><span class="lineno"> 35</span>  <span class="keywordtype">char</span> chFind[5];</div>
<div class="line"><a name="l00036"></a><span class="lineno"> 36</span> </div>
<div class="line"><a name="l00037"></a><span class="lineno"> 37</span>  <span class="keywordtype">bool</span> lgBAD,</div>
<div class="line"><a name="l00038"></a><span class="lineno"> 38</span>  lgLimOK;</div>
<div class="line"><a name="l00039"></a><span class="lineno"> 39</span> </div>
<div class="line"><a name="l00040"></a><span class="lineno"> 40</span>  <span class="keywordtype">long</span> <span class="keywordtype">int</span> cat,</div>
<div class="line"><a name="l00041"></a><span class="lineno"> 41</span>  i, </div>
<div class="line"><a name="l00042"></a><span class="lineno"> 42</span>  j, </div>
<div class="line"><a name="l00043"></a><span class="lineno"> 43</span>  nfound, </div>
<div class="line"><a name="l00044"></a><span class="lineno"> 44</span>  nobs_cat[MAXCAT],</div>
<div class="line"><a name="l00045"></a><span class="lineno"> 45</span>  np;</div>
<div class="line"><a name="l00046"></a><span class="lineno"> 46</span> </div>
<div class="line"><a name="l00047"></a><span class="lineno"> 47</span>  <a class="code" href="optimize_8h.html#a5846ad020ddaf38b0a183086a05196bf">chi2_type</a> chi1, </div>
<div class="line"><a name="l00048"></a><span class="lineno"> 48</span>  chi2_cat[MAXCAT],</div>
<div class="line"><a name="l00049"></a><span class="lineno"> 49</span>  chisq, </div>
<div class="line"><a name="l00050"></a><span class="lineno"> 50</span>  help,</div>
<div class="line"><a name="l00051"></a><span class="lineno"> 51</span>  predin,</div>
<div class="line"><a name="l00052"></a><span class="lineno"> 52</span>  scld,</div>
<div class="line"><a name="l00053"></a><span class="lineno"> 53</span>  snorm,</div>
<div class="line"><a name="l00054"></a><span class="lineno"> 54</span>  theocl,</div>
<div class="line"><a name="l00055"></a><span class="lineno"> 55</span>  temp_theory;</div>
<div class="line"><a name="l00056"></a><span class="lineno"> 56</span> </div>
<div class="line"><a name="l00057"></a><span class="lineno"> 57</span>  <a class="code" href="cddefines_8h.html#ada0cfa6927ba3683adc971d17643f2e5">DEBUG_ENTRY</a>( <span class="stringliteral">"optimize_func()"</span> );</div>
<div class="line"><a name="l00058"></a><span class="lineno"> 58</span> </div>
<div class="line"><a name="l00059"></a><span class="lineno"> 59</span>  <span class="keywordflow">if</span>( grid_index >= 0 )</div>
<div class="line"><a name="l00060"></a><span class="lineno"> 60</span>  <a class="code" href="optimize_8cpp.html#ad9c1c492528e865ade1aeae90a429054">optimize</a>.<a class="code" href="structt__optimize.html#a392f241ceb4d737760f27c75d30de897">nOptimiz</a> = grid_index;</div>
<div class="line"><a name="l00061"></a><span class="lineno"> 61</span> </div>
<div class="line"><a name="l00062"></a><span class="lineno"> 62</span>  <span class="comment">/* This routine is called by optimizer with values of the</span></div>
<div class="line"><a name="l00063"></a><span class="lineno"> 63</span> <span class="comment"> * variable parameters for CLOUDY in the array p(i). It returns</span></div>
<div class="line"><a name="l00064"></a><span class="lineno"> 64</span> <span class="comment"> * the value FUNC = SUM (obs-model)**2/sig**2 for the lines</span></div>
<div class="line"><a name="l00065"></a><span class="lineno"> 65</span> <span class="comment"> * specified in the observational data file, values held in the</span></div>
<div class="line"><a name="l00066"></a><span class="lineno"> 66</span> <span class="comment"> * common blocks /OBSLIN/ & /OBSINT/</span></div>
<div class="line"><a name="l00067"></a><span class="lineno"> 67</span> <span class="comment"> * replacement input strings for CLOUDY READR held in /chCardSav/</span></div>
<div class="line"><a name="l00068"></a><span class="lineno"> 68</span> <span class="comment"> * parameter information for setting chCardSav held in /parmv/</span></div>
<div class="line"><a name="l00069"></a><span class="lineno"> 69</span> <span class="comment"> * additional variables</span></div>
<div class="line"><a name="l00070"></a><span class="lineno"> 70</span> <span class="comment"> * Gary's variables</span></div>
<div class="line"><a name="l00071"></a><span class="lineno"> 71</span> <span class="comment"> */</span></div>
<div class="line"><a name="l00072"></a><span class="lineno"> 72</span> </div>
<div class="line"><a name="l00073"></a><span class="lineno"> 73</span>  <span class="keywordflow">if</span>( <a class="code" href="optimize_8cpp.html#ad9c1c492528e865ade1aeae90a429054">optimize</a>.<a class="code" href="structt__optimize.html#a95aa7de0bd5cd5d7a1b802831f77e08c">lgOptimFlow</a> )</div>
<div class="line"><a name="l00074"></a><span class="lineno"> 74</span>  {</div>
<div class="line"><a name="l00075"></a><span class="lineno"> 75</span>  fprintf( <a class="code" href="cddefines_8cpp.html#a94bc49f6569c17375ac7fbf6a66f6dd0">ioQQQ</a>, <span class="stringliteral">" trace, optimize_func variables"</span> );</div>
<div class="line"><a name="l00076"></a><span class="lineno"> 76</span>  <span class="keywordflow">for</span>( i=0; i < <a class="code" href="optimize_8cpp.html#ad9c1c492528e865ade1aeae90a429054">optimize</a>.<a class="code" href="structt__optimize.html#a5be42c3cf9b64d79ddea853de6d5f10f">nvary</a>; i++ )</div>
<div class="line"><a name="l00077"></a><span class="lineno"> 77</span>  {</div>
<div class="line"><a name="l00078"></a><span class="lineno"> 78</span>  fprintf( <a class="code" href="cddefines_8cpp.html#a94bc49f6569c17375ac7fbf6a66f6dd0">ioQQQ</a>, <span class="stringliteral">"%.2e"</span>, param[i] );</div>
<div class="line"><a name="l00079"></a><span class="lineno"> 79</span>  }</div>
<div class="line"><a name="l00080"></a><span class="lineno"> 80</span>  fprintf( <a class="code" href="cddefines_8cpp.html#a94bc49f6569c17375ac7fbf6a66f6dd0">ioQQQ</a>, <span class="stringliteral">"\n"</span> );</div>
<div class="line"><a name="l00081"></a><span class="lineno"> 81</span>  }</div>
<div class="line"><a name="l00082"></a><span class="lineno"> 82</span> </div>
<div class="line"><a name="l00083"></a><span class="lineno"> 83</span>  <span class="keywordflow">for</span>( i=0; i < <a class="code" href="optimize_8cpp.html#ad9c1c492528e865ade1aeae90a429054">optimize</a>.<a class="code" href="structt__optimize.html#a5be42c3cf9b64d79ddea853de6d5f10f">nvary</a>; i++ )</div>
<div class="line"><a name="l00084"></a><span class="lineno"> 84</span>  {</div>
<div class="line"><a name="l00085"></a><span class="lineno"> 85</span>  <a class="code" href="optimize_8cpp.html#ad9c1c492528e865ade1aeae90a429054">optimize</a>.<a class="code" href="structt__optimize.html#a61fab5b0f2116787dde71f83a323e98f">vparm</a>[0][i] = param[i];</div>
<div class="line"><a name="l00086"></a><span class="lineno"> 86</span>  }</div>
<div class="line"><a name="l00087"></a><span class="lineno"> 87</span> </div>
<div class="line"><a name="l00088"></a><span class="lineno"> 88</span>  <span class="comment">/* call routine to pack variables with appropriate</span></div>
<div class="line"><a name="l00089"></a><span class="lineno"> 89</span> <span class="comment"> * CLOUDY input lines given the array of variable parameters p(i) */</span></div>
<div class="line"><a name="l00090"></a><span class="lineno"> 90</span>  <a class="code" href="optimize_8h.html#ad6dd8ba12350273831a533098cdd4b77">vary_input</a>( &lgLimOK, grid_index );</div>
<div class="line"><a name="l00091"></a><span class="lineno"> 91</span> </div>
<div class="line"><a name="l00092"></a><span class="lineno"> 92</span>  <span class="comment">// nothing more to be done...</span></div>
<div class="line"><a name="l00093"></a><span class="lineno"> 93</span>  <span class="keywordflow">if</span>( strcmp(<a class="code" href="optimize_8cpp.html#ad9c1c492528e865ade1aeae90a429054">optimize</a>.<a class="code" href="structt__optimize.html#aa195ca512625c1a5d4a244ba64ab3054">chOptRtn</a>,<span class="stringliteral">"XSPE"</span>) == 0 )</div>
<div class="line"><a name="l00094"></a><span class="lineno"> 94</span>  <span class="keywordflow">return</span> 0.;</div>
<div class="line"><a name="l00095"></a><span class="lineno"> 95</span> </div>
<div class="line"><a name="l00096"></a><span class="lineno"> 96</span>  <span class="comment">/* zero out lots of variables */</span></div>
<div class="line"><a name="l00097"></a><span class="lineno"> 97</span>  <a class="code" href="init_8h.html#a06ed5713dc14dbeb741b1fec3c81afe8">zero</a>();</div>
<div class="line"><a name="l00098"></a><span class="lineno"> 98</span> </div>
<div class="line"><a name="l00099"></a><span class="lineno"> 99</span>  <span class="keywordflow">for</span>( i=0; i < <a class="code" href="optimize_8cpp.html#ad9c1c492528e865ade1aeae90a429054">optimize</a>.<a class="code" href="structt__optimize.html#a5be42c3cf9b64d79ddea853de6d5f10f">nvary</a>; i++ )</div>
<div class="line"><a name="l00100"></a><span class="lineno"> 100</span>  {</div>
<div class="line"><a name="l00101"></a><span class="lineno"> 101</span>  <a class="code" href="optimize_8cpp.html#ad9c1c492528e865ade1aeae90a429054">optimize</a>.<a class="code" href="structt__optimize.html#a1fbd0f95091419455715057b4d6f375a">varmax</a>[i] = <a class="code" href="cddefines_8h.html#abeecded55c36d9bbddf7109747eacf8e">max</a>(<a class="code" href="optimize_8cpp.html#ad9c1c492528e865ade1aeae90a429054">optimize</a>.<a class="code" href="structt__optimize.html#a1fbd0f95091419455715057b4d6f375a">varmax</a>[i],<a class="code" href="cddefines_8h.html#ae6ecbd79f3ed104df8afd4c7e53a1c06">min</a>(param[i],<a class="code" href="optimize_8cpp.html#ad9c1c492528e865ade1aeae90a429054">optimize</a>.<a class="code" href="structt__optimize.html#aea1f04b029ebc3bc1d4743dae1665378">varang</a>[i][1]));</div>
<div class="line"><a name="l00102"></a><span class="lineno"> 102</span>  <a class="code" href="optimize_8cpp.html#ad9c1c492528e865ade1aeae90a429054">optimize</a>.<a class="code" href="structt__optimize.html#a307cb548866e5040574e935d2d978708">varmin</a>[i] = <a class="code" href="cddefines_8h.html#ae6ecbd79f3ed104df8afd4c7e53a1c06">min</a>(<a class="code" href="optimize_8cpp.html#ad9c1c492528e865ade1aeae90a429054">optimize</a>.<a class="code" href="structt__optimize.html#a307cb548866e5040574e935d2d978708">varmin</a>[i],<a class="code" href="cddefines_8h.html#abeecded55c36d9bbddf7109747eacf8e">max</a>(param[i],<a class="code" href="optimize_8cpp.html#ad9c1c492528e865ade1aeae90a429054">optimize</a>.<a class="code" href="structt__optimize.html#aea1f04b029ebc3bc1d4743dae1665378">varang</a>[i][0]));</div>
<div class="line"><a name="l00103"></a><span class="lineno"> 103</span>  }</div>
<div class="line"><a name="l00104"></a><span class="lineno"> 104</span> </div>
<div class="line"><a name="l00105"></a><span class="lineno"> 105</span>  <span class="keywordflow">if</span>( !lgLimOK )</div>
<div class="line"><a name="l00106"></a><span class="lineno"> 106</span>  {</div>
<div class="line"><a name="l00107"></a><span class="lineno"> 107</span>  <span class="comment">/* these parameters are not within limits of parameter search</span></div>
<div class="line"><a name="l00108"></a><span class="lineno"> 108</span> <span class="comment"> * >>chng 96 apr 26, as per Peter van Hoof comment */</span></div>
<div class="line"><a name="l00109"></a><span class="lineno"> 109</span>  fprintf( <a class="code" href="cddefines_8cpp.html#a94bc49f6569c17375ac7fbf6a66f6dd0">ioQQQ</a>, <span class="stringliteral">" Iteration %ld not within range.\n"</span>, </div>
<div class="line"><a name="l00110"></a><span class="lineno"> 110</span>  <a class="code" href="optimize_8cpp.html#ad9c1c492528e865ade1aeae90a429054">optimize</a>.<a class="code" href="structt__optimize.html#a392f241ceb4d737760f27c75d30de897">nOptimiz</a> );</div>
<div class="line"><a name="l00111"></a><span class="lineno"> 111</span> </div>
<div class="line"><a name="l00112"></a><span class="lineno"> 112</span>  <span class="comment">/* always increment nOptimiz, even if parameters are out of bounds,</span></div>
<div class="line"><a name="l00113"></a><span class="lineno"> 113</span> <span class="comment"> * this prevents optimizer to get stuck in infinite loop */</span></div>
<div class="line"><a name="l00114"></a><span class="lineno"> 114</span>  ++<a class="code" href="optimize_8cpp.html#ad9c1c492528e865ade1aeae90a429054">optimize</a>.<a class="code" href="structt__optimize.html#a392f241ceb4d737760f27c75d30de897">nOptimiz</a>;</div>
<div class="line"><a name="l00115"></a><span class="lineno"> 115</span> </div>
<div class="line"><a name="l00116"></a><span class="lineno"> 116</span>  <span class="comment">/* this is error; very bad since not within range of parameters */</span></div>
<div class="line"><a name="l00117"></a><span class="lineno"> 117</span>  <span class="keywordflow">return</span> <a class="code" href="optimize_8h.html#a80ac847a91c9a7dce079921a5e42e16b">BIG_CHI2</a>;</div>
<div class="line"><a name="l00118"></a><span class="lineno"> 118</span>  }</div>
<div class="line"><a name="l00119"></a><span class="lineno"> 119</span> </div>
<div class="line"><a name="l00120"></a><span class="lineno"> 120</span>  lgBAD = <a class="code" href="cloudy_8cpp.html#a78cb7dc534b1a215439fcba0dbbc1ce2">cloudy</a>();</div>
<div class="line"><a name="l00121"></a><span class="lineno"> 121</span>  <span class="keywordflow">if</span>( lgBAD )</div>
<div class="line"><a name="l00122"></a><span class="lineno"> 122</span>  {</div>
<div class="line"><a name="l00123"></a><span class="lineno"> 123</span>  fprintf( <a class="code" href="cddefines_8cpp.html#a94bc49f6569c17375ac7fbf6a66f6dd0">ioQQQ</a>, <span class="stringliteral">" PROBLEM Cloudy returned error condition - what happened?\n"</span> );</div>
<div class="line"><a name="l00124"></a><span class="lineno"> 124</span>  }</div>
<div class="line"><a name="l00125"></a><span class="lineno"> 125</span> </div>
<div class="line"><a name="l00126"></a><span class="lineno"> 126</span>  <span class="keywordflow">if</span>( <a class="code" href="grid_8cpp.html#ac406de68bde71a8f6eb5674abb0529b9">grid</a>.<a class="code" href="structt__grid.html#a34ce941222843fd76524e95568d4c0cd">lgGrid</a> )</div>
<div class="line"><a name="l00127"></a><span class="lineno"> 127</span>  {</div>
<div class="line"><a name="l00128"></a><span class="lineno"> 128</span>  <span class="comment">/* this is the function's return value */</span></div>
<div class="line"><a name="l00129"></a><span class="lineno"> 129</span>  chisq = 0.;</div>
<div class="line"><a name="l00130"></a><span class="lineno"> 130</span>  }</div>
<div class="line"><a name="l00131"></a><span class="lineno"> 131</span>  <span class="keywordflow">else</span></div>
<div class="line"><a name="l00132"></a><span class="lineno"> 132</span>  {</div>
<div class="line"><a name="l00133"></a><span class="lineno"> 133</span>  <span class="comment">/* this branch optimizing, not grid </span></div>
<div class="line"><a name="l00134"></a><span class="lineno"> 134</span> <span class="comment"> / * extract line fluxes and compare with observations */</span></div>
<div class="line"><a name="l00135"></a><span class="lineno"> 135</span>  chisq = 0.0;</div>
<div class="line"><a name="l00136"></a><span class="lineno"> 136</span>  <span class="keywordflow">for</span>( i=0; i < MAXCAT; i++ )</div>
<div class="line"><a name="l00137"></a><span class="lineno"> 137</span>  {</div>
<div class="line"><a name="l00138"></a><span class="lineno"> 138</span>  nobs_cat[i] = 0;</div>
<div class="line"><a name="l00139"></a><span class="lineno"> 139</span>  chi2_cat[i] = 0.0;</div>
<div class="line"><a name="l00140"></a><span class="lineno"> 140</span>  }</div>
<div class="line"><a name="l00141"></a><span class="lineno"> 141</span> </div>
<div class="line"><a name="l00142"></a><span class="lineno"> 142</span>  <span class="keywordflow">if</span>( <a class="code" href="lines_8cpp.html#ad7cad3c382675e5fe4f38ba797d9de56">LineSave</a>.<a class="code" href="structt___line_save.html#aa7d9b89d8fb659d4ad5309f7982f18d7">ipNormWavL</a> < 0 )</div>
<div class="line"><a name="l00143"></a><span class="lineno"> 143</span>  {</div>
<div class="line"><a name="l00144"></a><span class="lineno"> 144</span>  fprintf( <a class="code" href="cddefines_8cpp.html#a94bc49f6569c17375ac7fbf6a66f6dd0">ioQQQ</a>, </div>
<div class="line"><a name="l00145"></a><span class="lineno"> 145</span>  <span class="stringliteral">" Normalization line array index is bad. What has gone wrong?\n"</span> );</div>
<div class="line"><a name="l00146"></a><span class="lineno"> 146</span>  <a class="code" href="cddefines_8h.html#a937636e18a3a517d1aeb2c111adb5160">cdEXIT</a>(<a class="code" href="cddefines_8h.html#a73efe787c131b385070f25d18b7c9aa4">EXIT_FAILURE</a>);</div>
<div class="line"><a name="l00147"></a><span class="lineno"> 147</span>  }</div>
<div class="line"><a name="l00148"></a><span class="lineno"> 148</span> </div>
<div class="line"><a name="l00149"></a><span class="lineno"> 149</span>  <span class="keywordflow">if</span>( (snorm = <a class="code" href="cdinit_8cpp.html#ae3959fad824c48b8fa4f06a0fb8867f4">LineSv</a>[<a class="code" href="lines_8cpp.html#ad7cad3c382675e5fe4f38ba797d9de56">LineSave</a>.<a class="code" href="structt___line_save.html#aa7d9b89d8fb659d4ad5309f7982f18d7">ipNormWavL</a>].<a class="code" href="structt__tag___line_sv.html#a6abe0103bf53c20ccb5805b0af190a24">SumLine</a>[0]) == 0. )</div>
<div class="line"><a name="l00150"></a><span class="lineno"> 150</span>  {</div>
<div class="line"><a name="l00151"></a><span class="lineno"> 151</span>  fprintf( <a class="code" href="cddefines_8cpp.html#a94bc49f6569c17375ac7fbf6a66f6dd0">ioQQQ</a>, <span class="stringliteral">"\n\n PROBLEM Normalization line has zero intensity. What has gone wrong?\n"</span> );</div>
<div class="line"><a name="l00152"></a><span class="lineno"> 152</span>  fprintf( <a class="code" href="cddefines_8cpp.html#a94bc49f6569c17375ac7fbf6a66f6dd0">ioQQQ</a>, <span class="stringliteral">" Is spectrum normalized to a species that does not exist?\n"</span> );</div>
<div class="line"><a name="l00153"></a><span class="lineno"> 153</span>  <a class="code" href="cddefines_8h.html#a937636e18a3a517d1aeb2c111adb5160">cdEXIT</a>(<a class="code" href="cddefines_8h.html#a73efe787c131b385070f25d18b7c9aa4">EXIT_FAILURE</a>);</div>
<div class="line"><a name="l00154"></a><span class="lineno"> 154</span>  }</div>
<div class="line"><a name="l00155"></a><span class="lineno"> 155</span> </div>
<div class="line"><a name="l00156"></a><span class="lineno"> 156</span>  <span class="comment">/* first print all warnings */</span></div>
<div class="line"><a name="l00157"></a><span class="lineno"> 157</span>  <a class="code" href="cddrive_8cpp.html#abba377f1299e86c11e62bb58d9dac921">cdWarnings</a>(<a class="code" href="cddefines_8cpp.html#a94bc49f6569c17375ac7fbf6a66f6dd0">ioQQQ</a>);</div>
<div class="line"><a name="l00158"></a><span class="lineno"> 158</span> </div>
<div class="line"><a name="l00159"></a><span class="lineno"> 159</span>  <span class="comment">/* print header before any of the individual chi2 values are printed */</span></div>
<div class="line"><a name="l00160"></a><span class="lineno"> 160</span>  <span class="keywordflow">if</span>( <a class="code" href="optimize_8cpp.html#ad9c1c492528e865ade1aeae90a429054">optimize</a>.<a class="code" href="structt__optimize.html#ac57814d75e3b4789a299f0767ab8daad">lgOptimize</a> )</div>
<div class="line"><a name="l00161"></a><span class="lineno"> 161</span>  fprintf( <a class="code" href="cddefines_8cpp.html#a94bc49f6569c17375ac7fbf6a66f6dd0">ioQQQ</a>, <span class="stringliteral">" ID Model Observed error chi**2 Type\n"</span> );</div>
<div class="line"><a name="l00162"></a><span class="lineno"> 162</span>  <span class="keywordflow">else</span></div>
<div class="line"><a name="l00163"></a><span class="lineno"> 163</span>  <a class="code" href="cddefines_8h.html#a092bd7bb2cb7fd9f483b6995cee61bc0">ASSERT</a>( <a class="code" href="grid_8cpp.html#ac406de68bde71a8f6eb5674abb0529b9">grid</a>.<a class="code" href="structt__grid.html#a34ce941222843fd76524e95568d4c0cd">lgGrid</a> );</div>
<div class="line"><a name="l00164"></a><span class="lineno"> 164</span> </div>
<div class="line"><a name="l00165"></a><span class="lineno"> 165</span>  <span class="comment">/* cycle through the observational values */</span></div>
<div class="line"><a name="l00166"></a><span class="lineno"> 166</span>  nfound = 0;</div>
<div class="line"><a name="l00167"></a><span class="lineno"> 167</span> </div>
<div class="line"><a name="l00168"></a><span class="lineno"> 168</span>  <span class="comment">/* first is to optimize relative emission line spectrum */</span></div>
<div class="line"><a name="l00169"></a><span class="lineno"> 169</span>  <span class="keywordflow">if</span>( <a class="code" href="optimize_8cpp.html#ad9c1c492528e865ade1aeae90a429054">optimize</a>.<a class="code" href="structt__optimize.html#a23b45c4139b13836457f37be9b81ded2">xLineInt_Obs</a>.size() > 0 )</div>
<div class="line"><a name="l00170"></a><span class="lineno"> 170</span>  {</div>
<div class="line"><a name="l00171"></a><span class="lineno"> 171</span>  <span class="comment">/* set pointers to all optimized lines if first call */</span></div>
<div class="line"><a name="l00172"></a><span class="lineno"> 172</span>  <span class="keywordflow">if</span>( <a class="code" href="optimize_8cpp.html#ad9c1c492528e865ade1aeae90a429054">optimize</a>.<a class="code" href="structt__optimize.html#afa3e77def5e195306d47e8ded5f3e227">ipobs</a>.size() == 0 )</div>
<div class="line"><a name="l00173"></a><span class="lineno"> 173</span>  {</div>
<div class="line"><a name="l00174"></a><span class="lineno"> 174</span>  <a class="code" href="optimize_8cpp.html#ad9c1c492528e865ade1aeae90a429054">optimize</a>.<a class="code" href="structt__optimize.html#afa3e77def5e195306d47e8ded5f3e227">ipobs</a>.resize( <a class="code" href="optimize_8cpp.html#ad9c1c492528e865ade1aeae90a429054">optimize</a>.<a class="code" href="structt__optimize.html#a23b45c4139b13836457f37be9b81ded2">xLineInt_Obs</a>.size() );</div>
<div class="line"><a name="l00175"></a><span class="lineno"> 175</span>  <span class="keywordtype">bool</span> lgHIT = <span class="keyword">true</span>;</div>
<div class="line"><a name="l00176"></a><span class="lineno"> 176</span>  <span class="keywordflow">for</span>( i=0; i < long(<a class="code" href="optimize_8cpp.html#ad9c1c492528e865ade1aeae90a429054">optimize</a>.<a class="code" href="structt__optimize.html#a23b45c4139b13836457f37be9b81ded2">xLineInt_Obs</a>.size()); i++ )</div>
<div class="line"><a name="l00177"></a><span class="lineno"> 177</span>  {</div>
<div class="line"><a name="l00178"></a><span class="lineno"> 178</span>  <a class="code" href="optimize_8h.html#a5846ad020ddaf38b0a183086a05196bf">chi2_type</a> temp1, temp2;</div>
<div class="line"><a name="l00179"></a><span class="lineno"> 179</span>  <a class="code" href="cddefines_8h.html#a7c3611a138396e34ed974cd065a12943">cap4</a>( chFind, <a class="code" href="optimize_8cpp.html#ad9c1c492528e865ade1aeae90a429054">optimize</a>.<a class="code" href="structt__optimize.html#ab291ec9e542f5295e486d2fb5af8dae5">chLineLabel</a>[i].c_str() );</div>
<div class="line"><a name="l00180"></a><span class="lineno"> 180</span> </div>
<div class="line"><a name="l00181"></a><span class="lineno"> 181</span>  <span class="comment">/* >> chng 06 may 04, use cdLine instead of ad hoc treatment.</span></div>
<div class="line"><a name="l00182"></a><span class="lineno"> 182</span> <span class="comment"> * no need to complain, cdLine will do it automatically. */</span></div>
<div class="line"><a name="l00183"></a><span class="lineno"> 183</span>  <span class="comment">/* this is an intensity, get the line, returns false if could not find it */</span></div>
<div class="line"><a name="l00184"></a><span class="lineno"> 184</span>  j = <a class="code" href="cddrive_8cpp.html#acfa09d7dfc6168a0bd0834dcbcf4e4e3">cdLine</a>( chFind, <a class="code" href="optimize_8cpp.html#ad9c1c492528e865ade1aeae90a429054">optimize</a>.<a class="code" href="structt__optimize.html#aec467a2d5f17d8bd50129b1a5f61aa51">wavelength</a>[i], &temp1, &temp2 );</div>
<div class="line"><a name="l00185"></a><span class="lineno"> 185</span>  <span class="keywordflow">if</span>( j <= 0 )</div>
<div class="line"><a name="l00186"></a><span class="lineno"> 186</span>  {</div>
<div class="line"><a name="l00187"></a><span class="lineno"> 187</span>  fprintf( <a class="code" href="cddefines_8cpp.html#a94bc49f6569c17375ac7fbf6a66f6dd0">ioQQQ</a>, <span class="stringliteral">"\n"</span> );</div>
<div class="line"><a name="l00188"></a><span class="lineno"> 188</span>  lgHIT = <span class="keyword">false</span>;</div>
<div class="line"><a name="l00189"></a><span class="lineno"> 189</span>  }</div>
<div class="line"><a name="l00190"></a><span class="lineno"> 190</span>  <span class="keywordflow">else</span></div>
<div class="line"><a name="l00191"></a><span class="lineno"> 191</span>  {</div>
<div class="line"><a name="l00192"></a><span class="lineno"> 192</span>  <a class="code" href="optimize_8cpp.html#ad9c1c492528e865ade1aeae90a429054">optimize</a>.<a class="code" href="structt__optimize.html#afa3e77def5e195306d47e8ded5f3e227">ipobs</a>[i] = j;</div>
<div class="line"><a name="l00193"></a><span class="lineno"> 193</span>  }</div>
<div class="line"><a name="l00194"></a><span class="lineno"> 194</span>  }</div>
<div class="line"><a name="l00195"></a><span class="lineno"> 195</span> </div>
<div class="line"><a name="l00196"></a><span class="lineno"> 196</span>  <span class="comment">/* we did not find the line */</span></div>
<div class="line"><a name="l00197"></a><span class="lineno"> 197</span>  <span class="keywordflow">if</span>( !lgHIT )</div>
<div class="line"><a name="l00198"></a><span class="lineno"> 198</span>  {</div>
<div class="line"><a name="l00199"></a><span class="lineno"> 199</span>  fprintf( <a class="code" href="cddefines_8cpp.html#a94bc49f6569c17375ac7fbf6a66f6dd0">ioQQQ</a>, <span class="stringliteral">"\n\n Optimizer could not find one or more lines.\n"</span> );</div>
<div class="line"><a name="l00200"></a><span class="lineno"> 200</span>  fprintf( <a class="code" href="cddefines_8cpp.html#a94bc49f6569c17375ac7fbf6a66f6dd0">ioQQQ</a>, <span class="stringliteral">" Sorry.\n"</span>);</div>
<div class="line"><a name="l00201"></a><span class="lineno"> 201</span>  <a class="code" href="cddefines_8h.html#a937636e18a3a517d1aeb2c111adb5160">cdEXIT</a>(<a class="code" href="cddefines_8h.html#a73efe787c131b385070f25d18b7c9aa4">EXIT_FAILURE</a>);</div>
<div class="line"><a name="l00202"></a><span class="lineno"> 202</span>  }</div>
<div class="line"><a name="l00203"></a><span class="lineno"> 203</span>  }</div>
<div class="line"><a name="l00204"></a><span class="lineno"> 204</span> </div>
<div class="line"><a name="l00205"></a><span class="lineno"> 205</span>  <span class="keywordflow">for</span>( i=0; i < 10; i++ )</div>
<div class="line"><a name="l00206"></a><span class="lineno"> 206</span>  {</div>
<div class="line"><a name="l00207"></a><span class="lineno"> 207</span>  <a class="code" href="optimize_8cpp.html#ad9c1c492528e865ade1aeae90a429054">optimize</a>.<a class="code" href="structt__optimize.html#aef03434f73e64472057dff4530860822">SavGenericData</a>[i] = 0.;</div>
<div class="line"><a name="l00208"></a><span class="lineno"> 208</span>  }</div>
<div class="line"><a name="l00209"></a><span class="lineno"> 209</span> </div>
<div class="line"><a name="l00210"></a><span class="lineno"> 210</span>  <span class="keywordflow">for</span>( i=0; i < long(<a class="code" href="optimize_8cpp.html#ad9c1c492528e865ade1aeae90a429054">optimize</a>.<a class="code" href="structt__optimize.html#a23b45c4139b13836457f37be9b81ded2">xLineInt_Obs</a>.size()); i++ )</div>
<div class="line"><a name="l00211"></a><span class="lineno"> 211</span>  {</div>
<div class="line"><a name="l00212"></a><span class="lineno"> 212</span>  <span class="comment">/* and find corresponding model value by straight search */</span></div>
<div class="line"><a name="l00213"></a><span class="lineno"> 213</span>  nfound += 1;</div>
<div class="line"><a name="l00214"></a><span class="lineno"> 214</span>  scld = (<a class="code" href="optimize_8h.html#a5846ad020ddaf38b0a183086a05196bf">chi2_type</a>)<a class="code" href="cdinit_8cpp.html#ae3959fad824c48b8fa4f06a0fb8867f4">LineSv</a>[<a class="code" href="optimize_8cpp.html#ad9c1c492528e865ade1aeae90a429054">optimize</a>.<a class="code" href="structt__optimize.html#afa3e77def5e195306d47e8ded5f3e227">ipobs</a>[i]].<a class="code" href="structt__tag___line_sv.html#a6abe0103bf53c20ccb5805b0af190a24">SumLine</a>[<a class="code" href="optimize_8cpp.html#ad9c1c492528e865ade1aeae90a429054">optimize</a>.<a class="code" href="structt__optimize.html#a899a957dfba149cde9df64984082c152">nEmergent</a>[i]]/</div>
<div class="line"><a name="l00215"></a><span class="lineno"> 215</span>  (<a class="code" href="optimize_8h.html#a5846ad020ddaf38b0a183086a05196bf">chi2_type</a>)snorm*<a class="code" href="lines_8cpp.html#ad7cad3c382675e5fe4f38ba797d9de56">LineSave</a>.<a class="code" href="structt___line_save.html#af233718a78d2f970b01981bfd7d67c20">ScaleNormLine</a>;</div>
<div class="line"><a name="l00216"></a><span class="lineno"> 216</span>  chi1 = <a class="code" href="optimize__func_8cpp.html#a7630974ee828b586108aed1f8499337b">chi2_func</a>(scld,(<a class="code" href="optimize_8h.html#a5846ad020ddaf38b0a183086a05196bf">chi2_type</a>)<a class="code" href="optimize_8cpp.html#ad9c1c492528e865ade1aeae90a429054">optimize</a>.<a class="code" href="structt__optimize.html#a23b45c4139b13836457f37be9b81ded2">xLineInt_Obs</a>[i],</div>
<div class="line"><a name="l00217"></a><span class="lineno"> 217</span>  (<a class="code" href="optimize_8h.html#a5846ad020ddaf38b0a183086a05196bf">chi2_type</a>)<a class="code" href="optimize_8cpp.html#ad9c1c492528e865ade1aeae90a429054">optimize</a>.<a class="code" href="structt__optimize.html#ace0e89de3bc67019a297c99632603423">xLineInt_error</a>[i]);</div>
<div class="line"><a name="l00218"></a><span class="lineno"> 218</span>  cat = 0;</div>
<div class="line"><a name="l00219"></a><span class="lineno"> 219</span>  nobs_cat[cat]++;</div>
<div class="line"><a name="l00220"></a><span class="lineno"> 220</span>  chi2_cat[cat] += chi1;</div>
<div class="line"><a name="l00221"></a><span class="lineno"> 221</span> </div>
<div class="line"><a name="l00222"></a><span class="lineno"> 222</span>  fprintf( <a class="code" href="cddefines_8cpp.html#a94bc49f6569c17375ac7fbf6a66f6dd0">ioQQQ</a>, <span class="stringliteral">" %4.4s "</span>, <a class="code" href="cdinit_8cpp.html#ae3959fad824c48b8fa4f06a0fb8867f4">LineSv</a>[<a class="code" href="optimize_8cpp.html#ad9c1c492528e865ade1aeae90a429054">optimize</a>.<a class="code" href="structt__optimize.html#afa3e77def5e195306d47e8ded5f3e227">ipobs</a>[i]].<a class="code" href="structt__tag___line_sv.html#ab364df22d4ee03d053d35eef3f73573c">chALab</a>);</div>
<div class="line"><a name="l00223"></a><span class="lineno"> 223</span> </div>
<div class="line"><a name="l00224"></a><span class="lineno"> 224</span>  <a class="code" href="prt_8cpp.html#a00df8d844a4afc984dfbd0fff696acb3">prt_wl</a>( <a class="code" href="cddefines_8cpp.html#a94bc49f6569c17375ac7fbf6a66f6dd0">ioQQQ</a>,<a class="code" href="cdinit_8cpp.html#ae3959fad824c48b8fa4f06a0fb8867f4">LineSv</a>[<a class="code" href="optimize_8cpp.html#ad9c1c492528e865ade1aeae90a429054">optimize</a>.<a class="code" href="structt__optimize.html#afa3e77def5e195306d47e8ded5f3e227">ipobs</a>[i]].<a class="code" href="structt__tag___line_sv.html#abd466d899c03e5a9d71032c2e9826591">wavelength</a>);</div>
<div class="line"><a name="l00225"></a><span class="lineno"> 225</span> </div>
<div class="line"><a name="l00226"></a><span class="lineno"> 226</span>  fprintf( <a class="code" href="cddefines_8cpp.html#a94bc49f6569c17375ac7fbf6a66f6dd0">ioQQQ</a>, <span class="stringliteral">"%12.5f%12.5f%12.5f%12.2e Relative intensity"</span>, </div>
<div class="line"><a name="l00227"></a><span class="lineno"> 227</span>  scld, </div>
<div class="line"><a name="l00228"></a><span class="lineno"> 228</span>  <a class="code" href="optimize_8cpp.html#ad9c1c492528e865ade1aeae90a429054">optimize</a>.<a class="code" href="structt__optimize.html#a23b45c4139b13836457f37be9b81ded2">xLineInt_Obs</a>[i], </div>
<div class="line"><a name="l00229"></a><span class="lineno"> 229</span>  <a class="code" href="optimize_8cpp.html#ad9c1c492528e865ade1aeae90a429054">optimize</a>.<a class="code" href="structt__optimize.html#ace0e89de3bc67019a297c99632603423">xLineInt_error</a>[i], </div>
<div class="line"><a name="l00230"></a><span class="lineno"> 230</span>  chi1 );</div>
<div class="line"><a name="l00231"></a><span class="lineno"> 231</span> </div>
<div class="line"><a name="l00232"></a><span class="lineno"> 232</span>  fprintf( <a class="code" href="cddefines_8cpp.html#a94bc49f6569c17375ac7fbf6a66f6dd0">ioQQQ</a>, <span class="stringliteral">"\n"</span> );</div>
<div class="line"><a name="l00233"></a><span class="lineno"> 233</span> </div>
<div class="line"><a name="l00234"></a><span class="lineno"> 234</span>  <span class="keywordflow">if</span>( i<10 )</div>
<div class="line"><a name="l00235"></a><span class="lineno"> 235</span>  {</div>
<div class="line"><a name="l00236"></a><span class="lineno"> 236</span>  <a class="code" href="optimize_8cpp.html#ad9c1c492528e865ade1aeae90a429054">optimize</a>.<a class="code" href="structt__optimize.html#aef03434f73e64472057dff4530860822">SavGenericData</a>[i] = chi1;</div>
<div class="line"><a name="l00237"></a><span class="lineno"> 237</span>  }</div>
<div class="line"><a name="l00238"></a><span class="lineno"> 238</span>  }</div>
<div class="line"><a name="l00239"></a><span class="lineno"> 239</span>  }</div>
<div class="line"><a name="l00240"></a><span class="lineno"> 240</span> </div>
<div class="line"><a name="l00241"></a><span class="lineno"> 241</span>  <span class="comment">/* this is to optimize a mean temperature */</span></div>
<div class="line"><a name="l00242"></a><span class="lineno"> 242</span>  <span class="keywordflow">for</span>( i=0; i < long(<a class="code" href="optimize_8cpp.html#ad9c1c492528e865ade1aeae90a429054">optimize</a>.<a class="code" href="structt__optimize.html#a8c42b89eb12c7f201aa9ac12d8331613">temp_obs</a>.size()); i++ )</div>
<div class="line"><a name="l00243"></a><span class="lineno"> 243</span>  {</div>
<div class="line"><a name="l00244"></a><span class="lineno"> 244</span>  <span class="keywordflow">if</span>( <a class="code" href="cddrive_8cpp.html#ae2794d96dece12d12059f055d9bc58b7">cdTemp</a>( <a class="code" href="optimize_8cpp.html#ad9c1c492528e865ade1aeae90a429054">optimize</a>.<a class="code" href="structt__optimize.html#ad4405cde8407e5d9120671a7d573aa8e">chTempLab</a>[i].c_str(), <a class="code" href="optimize_8cpp.html#ad9c1c492528e865ade1aeae90a429054">optimize</a>.<a class="code" href="structt__optimize.html#a8c53ecdbed38e7acad3463c9246658b8">ionTemp</a>[i],</div>
<div class="line"><a name="l00245"></a><span class="lineno"> 245</span>  &temp_theory, <a class="code" href="optimize_8cpp.html#ad9c1c492528e865ade1aeae90a429054">optimize</a>.<a class="code" href="structt__optimize.html#aec4e99500fb7847044346f7e27534943">chTempWeight</a>[i].c_str()) )</div>
<div class="line"><a name="l00246"></a><span class="lineno"> 246</span>  {</div>
<div class="line"><a name="l00247"></a><span class="lineno"> 247</span>  <span class="comment">/* did not find column density */</span></div>
<div class="line"><a name="l00248"></a><span class="lineno"> 248</span>  fprintf(<a class="code" href="cddefines_8cpp.html#a94bc49f6569c17375ac7fbf6a66f6dd0">ioQQQ</a>,<span class="stringliteral">" optimizer did not find column density %s %li \n"</span>,</div>
<div class="line"><a name="l00249"></a><span class="lineno"> 249</span>  <a class="code" href="optimize_8cpp.html#ad9c1c492528e865ade1aeae90a429054">optimize</a>.<a class="code" href="structt__optimize.html#ad4405cde8407e5d9120671a7d573aa8e">chTempLab</a>[i].c_str(),<a class="code" href="optimize_8cpp.html#ad9c1c492528e865ade1aeae90a429054">optimize</a>.<a class="code" href="structt__optimize.html#a8c53ecdbed38e7acad3463c9246658b8">ionTemp</a>[i] );</div>
<div class="line"><a name="l00250"></a><span class="lineno"> 250</span>  <a class="code" href="cddefines_8h.html#a937636e18a3a517d1aeb2c111adb5160">cdEXIT</a>(<a class="code" href="cddefines_8h.html#a73efe787c131b385070f25d18b7c9aa4">EXIT_FAILURE</a>);</div>
<div class="line"><a name="l00251"></a><span class="lineno"> 251</span>  }</div>
<div class="line"><a name="l00252"></a><span class="lineno"> 252</span>  nfound += 1;</div>
<div class="line"><a name="l00253"></a><span class="lineno"> 253</span>  chi1 = <a class="code" href="optimize__func_8cpp.html#a7630974ee828b586108aed1f8499337b">chi2_func</a>(temp_theory,(<a class="code" href="optimize_8h.html#a5846ad020ddaf38b0a183086a05196bf">chi2_type</a>)<a class="code" href="optimize_8cpp.html#ad9c1c492528e865ade1aeae90a429054">optimize</a>.<a class="code" href="structt__optimize.html#a8c42b89eb12c7f201aa9ac12d8331613">temp_obs</a>[i],</div>
<div class="line"><a name="l00254"></a><span class="lineno"> 254</span>  (<a class="code" href="optimize_8h.html#a5846ad020ddaf38b0a183086a05196bf">chi2_type</a>)<a class="code" href="optimize_8cpp.html#ad9c1c492528e865ade1aeae90a429054">optimize</a>.<a class="code" href="structt__optimize.html#a61f0e654fe0129db127e8f93fbf923f3">temp_error</a>[i]);</div>
<div class="line"><a name="l00255"></a><span class="lineno"> 255</span>  cat = 3;</div>
<div class="line"><a name="l00256"></a><span class="lineno"> 256</span>  nobs_cat[cat]++;</div>
<div class="line"><a name="l00257"></a><span class="lineno"> 257</span>  chi2_cat[cat] += chi1;</div>
<div class="line"><a name="l00258"></a><span class="lineno"> 258</span> </div>
<div class="line"><a name="l00259"></a><span class="lineno"> 259</span>  fprintf( <a class="code" href="cddefines_8cpp.html#a94bc49f6569c17375ac7fbf6a66f6dd0">ioQQQ</a>, <span class="stringliteral">" %4.4s%7ld%12.4e%12.4e%12.5f%12.2e Temperature\n"</span>,</div>
<div class="line"><a name="l00260"></a><span class="lineno"> 260</span>  <a class="code" href="optimize_8cpp.html#ad9c1c492528e865ade1aeae90a429054">optimize</a>.<a class="code" href="structt__optimize.html#ad4405cde8407e5d9120671a7d573aa8e">chTempLab</a>[i].c_str(), <a class="code" href="optimize_8cpp.html#ad9c1c492528e865ade1aeae90a429054">optimize</a>.<a class="code" href="structt__optimize.html#a8c53ecdbed38e7acad3463c9246658b8">ionTemp</a>[i], temp_theory,</div>
<div class="line"><a name="l00261"></a><span class="lineno"> 261</span>  <a class="code" href="optimize_8cpp.html#ad9c1c492528e865ade1aeae90a429054">optimize</a>.<a class="code" href="structt__optimize.html#a8c42b89eb12c7f201aa9ac12d8331613">temp_obs</a>[i], <a class="code" href="optimize_8cpp.html#ad9c1c492528e865ade1aeae90a429054">optimize</a>.<a class="code" href="structt__optimize.html#a61f0e654fe0129db127e8f93fbf923f3">temp_error</a>[i], chi1 );</div>
<div class="line"><a name="l00262"></a><span class="lineno"> 262</span>  }</div>
<div class="line"><a name="l00263"></a><span class="lineno"> 263</span> </div>
<div class="line"><a name="l00264"></a><span class="lineno"> 264</span>  <span class="comment">/* option to optimize column densities */</span></div>
<div class="line"><a name="l00265"></a><span class="lineno"> 265</span>  <span class="keywordflow">for</span>( i=0; i < long(<a class="code" href="optimize_8cpp.html#ad9c1c492528e865ade1aeae90a429054">optimize</a>.<a class="code" href="structt__optimize.html#a32a34975b48cf110cd0405eef6bb6ce4">ColDen_Obs</a>.size()); i++ )</div>
<div class="line"><a name="l00266"></a><span class="lineno"> 266</span>  {</div>
<div class="line"><a name="l00267"></a><span class="lineno"> 267</span>  <span class="keywordflow">if</span>( <a class="code" href="cddrive_8cpp.html#a13d62b4a3532cbca21b0e6249a1d0a0c">cdColm</a>(<a class="code" href="optimize_8cpp.html#ad9c1c492528e865ade1aeae90a429054">optimize</a>.<a class="code" href="structt__optimize.html#a1d435167a437a0a6327d9e002b24881c">chColDen_label</a>[i].c_str(),<a class="code" href="optimize_8cpp.html#ad9c1c492528e865ade1aeae90a429054">optimize</a>.<a class="code" href="structt__optimize.html#afae4f78485c0d91265efe752e58ce0ab">ion_ColDen</a>[i], &theocl) )</div>
<div class="line"><a name="l00268"></a><span class="lineno"> 268</span>  {</div>
<div class="line"><a name="l00269"></a><span class="lineno"> 269</span>  <span class="comment">/* did not find column density */</span></div>
<div class="line"><a name="l00270"></a><span class="lineno"> 270</span>  fprintf(<a class="code" href="cddefines_8cpp.html#a94bc49f6569c17375ac7fbf6a66f6dd0">ioQQQ</a>,<span class="stringliteral">" optimizer did not find column density %s %li \n"</span>,</div>
<div class="line"><a name="l00271"></a><span class="lineno"> 271</span>  <a class="code" href="optimize_8cpp.html#ad9c1c492528e865ade1aeae90a429054">optimize</a>.<a class="code" href="structt__optimize.html#a1d435167a437a0a6327d9e002b24881c">chColDen_label</a>[i].c_str(), <a class="code" href="optimize_8cpp.html#ad9c1c492528e865ade1aeae90a429054">optimize</a>.<a class="code" href="structt__optimize.html#afae4f78485c0d91265efe752e58ce0ab">ion_ColDen</a>[i] );</div>
<div class="line"><a name="l00272"></a><span class="lineno"> 272</span>  <a class="code" href="cddefines_8h.html#a937636e18a3a517d1aeb2c111adb5160">cdEXIT</a>(<a class="code" href="cddefines_8h.html#a73efe787c131b385070f25d18b7c9aa4">EXIT_FAILURE</a>);</div>
<div class="line"><a name="l00273"></a><span class="lineno"> 273</span>  }</div>
<div class="line"><a name="l00274"></a><span class="lineno"> 274</span>  nfound++;</div>
<div class="line"><a name="l00275"></a><span class="lineno"> 275</span>  chi1 = <a class="code" href="optimize__func_8cpp.html#a7630974ee828b586108aed1f8499337b">chi2_func</a>(theocl,(<a class="code" href="optimize_8h.html#a5846ad020ddaf38b0a183086a05196bf">chi2_type</a>)<a class="code" href="optimize_8cpp.html#ad9c1c492528e865ade1aeae90a429054">optimize</a>.<a class="code" href="structt__optimize.html#a32a34975b48cf110cd0405eef6bb6ce4">ColDen_Obs</a>[i],</div>
<div class="line"><a name="l00276"></a><span class="lineno"> 276</span>  (<a class="code" href="optimize_8h.html#a5846ad020ddaf38b0a183086a05196bf">chi2_type</a>)<a class="code" href="optimize_8cpp.html#ad9c1c492528e865ade1aeae90a429054">optimize</a>.<a class="code" href="structt__optimize.html#ad5cc60b6859dd3f37877aa3d6daa19f6">ColDen_error</a>[i]);</div>
<div class="line"><a name="l00277"></a><span class="lineno"> 277</span>  cat = 1;</div>
<div class="line"><a name="l00278"></a><span class="lineno"> 278</span>  nobs_cat[cat]++;</div>
<div class="line"><a name="l00279"></a><span class="lineno"> 279</span>  chi2_cat[cat] += chi1;</div>
<div class="line"><a name="l00280"></a><span class="lineno"> 280</span> </div>
<div class="line"><a name="l00281"></a><span class="lineno"> 281</span>  fprintf( <a class="code" href="cddefines_8cpp.html#a94bc49f6569c17375ac7fbf6a66f6dd0">ioQQQ</a>, <span class="stringliteral">" %4.4s%7ld%12.4e%12.4e%12.5f%12.2e Column density\n"</span>, </div>
<div class="line"><a name="l00282"></a><span class="lineno"> 282</span>  <a class="code" href="optimize_8cpp.html#ad9c1c492528e865ade1aeae90a429054">optimize</a>.<a class="code" href="structt__optimize.html#a1d435167a437a0a6327d9e002b24881c">chColDen_label</a>[i].c_str(), <a class="code" href="optimize_8cpp.html#ad9c1c492528e865ade1aeae90a429054">optimize</a>.<a class="code" href="structt__optimize.html#afae4f78485c0d91265efe752e58ce0ab">ion_ColDen</a>[i], theocl, </div>
<div class="line"><a name="l00283"></a><span class="lineno"> 283</span>  <a class="code" href="optimize_8cpp.html#ad9c1c492528e865ade1aeae90a429054">optimize</a>.<a class="code" href="structt__optimize.html#a32a34975b48cf110cd0405eef6bb6ce4">ColDen_Obs</a>[i], <a class="code" href="optimize_8cpp.html#ad9c1c492528e865ade1aeae90a429054">optimize</a>.<a class="code" href="structt__optimize.html#ad5cc60b6859dd3f37877aa3d6daa19f6">ColDen_error</a>[i], chi1 );</div>
<div class="line"><a name="l00284"></a><span class="lineno"> 284</span>  }</div>
<div class="line"><a name="l00285"></a><span class="lineno"> 285</span> </div>
<div class="line"><a name="l00286"></a><span class="lineno"> 286</span>  <span class="comment">/* option to optimize line flux */</span></div>
<div class="line"><a name="l00287"></a><span class="lineno"> 287</span>  <span class="keywordflow">if</span>( <a class="code" href="optimize_8cpp.html#ad9c1c492528e865ade1aeae90a429054">optimize</a>.<a class="code" href="structt__optimize.html#a28391e155d2eb95eb6358d4ceba2705a">lgOptLum</a> )</div>
<div class="line"><a name="l00288"></a><span class="lineno"> 288</span>  {</div>
<div class="line"><a name="l00289"></a><span class="lineno"> 289</span>  ++nfound;</div>
<div class="line"><a name="l00290"></a><span class="lineno"> 290</span>  <span class="keywordflow">if</span>( <a class="code" href="cdinit_8cpp.html#ae3959fad824c48b8fa4f06a0fb8867f4">LineSv</a>[<a class="code" href="lines_8cpp.html#ad7cad3c382675e5fe4f38ba797d9de56">LineSave</a>.<a class="code" href="structt___line_save.html#aa7d9b89d8fb659d4ad5309f7982f18d7">ipNormWavL</a>].<a class="code" href="structt__tag___line_sv.html#a6abe0103bf53c20ccb5805b0af190a24">SumLine</a>[<a class="code" href="optimize_8cpp.html#ad9c1c492528e865ade1aeae90a429054">optimize</a>.<a class="code" href="structt__optimize.html#a0bb1bafd6acfcf01c7846119118411d0">nOptLum</a>] > 0.f )</div>
<div class="line"><a name="l00291"></a><span class="lineno"> 291</span>  {</div>
<div class="line"><a name="l00292"></a><span class="lineno"> 292</span>  predin = log10(<a class="code" href="cdinit_8cpp.html#ae3959fad824c48b8fa4f06a0fb8867f4">LineSv</a>[<a class="code" href="lines_8cpp.html#ad7cad3c382675e5fe4f38ba797d9de56">LineSave</a>.<a class="code" href="structt___line_save.html#aa7d9b89d8fb659d4ad5309f7982f18d7">ipNormWavL</a>].<a class="code" href="structt__tag___line_sv.html#a6abe0103bf53c20ccb5805b0af190a24">SumLine</a>[<a class="code" href="optimize_8cpp.html#ad9c1c492528e865ade1aeae90a429054">optimize</a>.<a class="code" href="structt__optimize.html#a0bb1bafd6acfcf01c7846119118411d0">nOptLum</a>]) +</div>
<div class="line"><a name="l00293"></a><span class="lineno"> 293</span>  <a class="code" href="radius_8cpp.html#ad57f06f64461f4325506113ba07f29fa">radius</a>.<a class="code" href="structt__radius.html#ab07967bc61c131cffd182759c9ae80ee">Conv2PrtInten</a>;</div>
<div class="line"><a name="l00294"></a><span class="lineno"> 294</span>  help = pow(10.,predin-(<a class="code" href="optimize_8h.html#a5846ad020ddaf38b0a183086a05196bf">chi2_type</a>)<a class="code" href="optimize_8cpp.html#ad9c1c492528e865ade1aeae90a429054">optimize</a>.<a class="code" href="structt__optimize.html#aa7ee30e0d3bc99dba6e39d6dafac78af">optint</a>);</div>
<div class="line"><a name="l00295"></a><span class="lineno"> 295</span>  chi1 = <a class="code" href="optimize__func_8cpp.html#a7630974ee828b586108aed1f8499337b">chi2_func</a>(help,1.,(<a class="code" href="optimize_8h.html#a5846ad020ddaf38b0a183086a05196bf">chi2_type</a>)<a class="code" href="optimize_8cpp.html#ad9c1c492528e865ade1aeae90a429054">optimize</a>.<a class="code" href="structt__optimize.html#aac62945c6097e9dcc1c781fe803a1522">optier</a>);</div>
<div class="line"><a name="l00296"></a><span class="lineno"> 296</span>  }</div>
<div class="line"><a name="l00297"></a><span class="lineno"> 297</span>  <span class="keywordflow">else</span></div>
<div class="line"><a name="l00298"></a><span class="lineno"> 298</span>  {</div>
<div class="line"><a name="l00299"></a><span class="lineno"> 299</span>  predin = -999.99999;</div>
<div class="line"><a name="l00300"></a><span class="lineno"> 300</span>  chi1 = <a class="code" href="optimize_8h.html#a80ac847a91c9a7dce079921a5e42e16b">BIG_CHI2</a>;</div>
<div class="line"><a name="l00301"></a><span class="lineno"> 301</span>  }</div>
<div class="line"><a name="l00302"></a><span class="lineno"> 302</span>  cat = 2;</div>
<div class="line"><a name="l00303"></a><span class="lineno"> 303</span>  nobs_cat[cat]++;</div>
<div class="line"><a name="l00304"></a><span class="lineno"> 304</span>  chi2_cat[cat] += chi1;</div>
<div class="line"><a name="l00305"></a><span class="lineno"> 305</span> </div>
<div class="line"><a name="l00306"></a><span class="lineno"> 306</span>  fprintf( <a class="code" href="cddefines_8cpp.html#a94bc49f6569c17375ac7fbf6a66f6dd0">ioQQQ</a>, <span class="stringliteral">" %4.4s "</span>, </div>
<div class="line"><a name="l00307"></a><span class="lineno"> 307</span>  <a class="code" href="cdinit_8cpp.html#ae3959fad824c48b8fa4f06a0fb8867f4">LineSv</a>[<a class="code" href="lines_8cpp.html#ad7cad3c382675e5fe4f38ba797d9de56">LineSave</a>.<a class="code" href="structt___line_save.html#aa7d9b89d8fb659d4ad5309f7982f18d7">ipNormWavL</a>].<a class="code" href="structt__tag___line_sv.html#ab364df22d4ee03d053d35eef3f73573c">chALab</a> );</div>
<div class="line"><a name="l00308"></a><span class="lineno"> 308</span> </div>
<div class="line"><a name="l00309"></a><span class="lineno"> 309</span>  <a class="code" href="prt_8cpp.html#a00df8d844a4afc984dfbd0fff696acb3">prt_wl</a>( <a class="code" href="cddefines_8cpp.html#a94bc49f6569c17375ac7fbf6a66f6dd0">ioQQQ</a>, <a class="code" href="cdinit_8cpp.html#ae3959fad824c48b8fa4f06a0fb8867f4">LineSv</a>[<a class="code" href="lines_8cpp.html#ad7cad3c382675e5fe4f38ba797d9de56">LineSave</a>.<a class="code" href="structt___line_save.html#aa7d9b89d8fb659d4ad5309f7982f18d7">ipNormWavL</a>].<a class="code" href="structt__tag___line_sv.html#abd466d899c03e5a9d71032c2e9826591">wavelength</a> );</div>
<div class="line"><a name="l00310"></a><span class="lineno"> 310</span> </div>
<div class="line"><a name="l00311"></a><span class="lineno"> 311</span>  fprintf( <a class="code" href="cddefines_8cpp.html#a94bc49f6569c17375ac7fbf6a66f6dd0">ioQQQ</a>, <span class="stringliteral">"%12.5f%12.5f%12.5f%12.2e Line intensity\n"</span>, </div>
<div class="line"><a name="l00312"></a><span class="lineno"> 312</span>  predin, </div>
<div class="line"><a name="l00313"></a><span class="lineno"> 313</span>  <a class="code" href="optimize_8cpp.html#ad9c1c492528e865ade1aeae90a429054">optimize</a>.<a class="code" href="structt__optimize.html#aa7ee30e0d3bc99dba6e39d6dafac78af">optint</a>, </div>
<div class="line"><a name="l00314"></a><span class="lineno"> 314</span>  <a class="code" href="optimize_8cpp.html#ad9c1c492528e865ade1aeae90a429054">optimize</a>.<a class="code" href="structt__optimize.html#aac62945c6097e9dcc1c781fe803a1522">optier</a>, </div>
<div class="line"><a name="l00315"></a><span class="lineno"> 315</span>  chi1 );</div>
<div class="line"><a name="l00316"></a><span class="lineno"> 316</span>  }</div>
<div class="line"><a name="l00317"></a><span class="lineno"> 317</span> </div>
<div class="line"><a name="l00318"></a><span class="lineno"> 318</span>  <span class="comment">/* option to optimize the absolute continuum flux */</span></div>
<div class="line"><a name="l00319"></a><span class="lineno"> 319</span>  <span class="keywordflow">for</span>( <span class="keywordtype">size_t</span> k=0; k < <a class="code" href="optimize_8cpp.html#ad9c1c492528e865ade1aeae90a429054">optimize</a>.<a class="code" href="structt__optimize.html#a5f794f6e77fbfa9ed87e3ce6696d2b47">ContIndex</a>.size(); k++ )</div>
<div class="line"><a name="l00320"></a><span class="lineno"> 320</span>  {</div>
<div class="line"><a name="l00321"></a><span class="lineno"> 321</span>  nfound++;</div>
<div class="line"><a name="l00322"></a><span class="lineno"> 322</span>  <span class="comment">// there are 4 entries for each wavelength: nFnu, nInu, InwT, InwC</span></div>
<div class="line"><a name="l00323"></a><span class="lineno"> 323</span>  <span class="keywordtype">long</span> ind = <a class="code" href="class_singleton.html#a3c8c8b154dbf1701b773eb6a49d72f71">t_PredCont::Inst</a>().offset() + 4*<a class="code" href="optimize_8cpp.html#ad9c1c492528e865ade1aeae90a429054">optimize</a>.<a class="code" href="structt__optimize.html#a5f794f6e77fbfa9ed87e3ce6696d2b47">ContIndex</a>[k];</div>
<div class="line"><a name="l00324"></a><span class="lineno"> 324</span>  <a class="code" href="optimize_8h.html#a5846ad020ddaf38b0a183086a05196bf">chi2_type</a> nFnu_model = 0.;</div>
<div class="line"><a name="l00325"></a><span class="lineno"> 325</span>  <span class="keywordflow">if</span>( <a class="code" href="cdinit_8cpp.html#ae3959fad824c48b8fa4f06a0fb8867f4">LineSv</a>[ind].SumLine[0] > <a class="code" href="cpu_8h.html#af1d998d79044c9644b48f8d5647d57b6">SMALLFLOAT</a> )</div>
<div class="line"><a name="l00326"></a><span class="lineno"> 326</span>  {</div>
<div class="line"><a name="l00327"></a><span class="lineno"> 327</span>  nFnu_model = <a class="code" href="optimize_8h.html#a5846ad020ddaf38b0a183086a05196bf">chi2_type</a>( log10(<a class="code" href="cdinit_8cpp.html#ae3959fad824c48b8fa4f06a0fb8867f4">LineSv</a>[ind].SumLine[0]) + <a class="code" href="radius_8cpp.html#ad57f06f64461f4325506113ba07f29fa">radius</a>.<a class="code" href="structt__radius.html#ab07967bc61c131cffd182759c9ae80ee">Conv2PrtInten</a> );</div>
<div class="line"><a name="l00328"></a><span class="lineno"> 328</span>  nFnu_model = pow(10.,nFnu_model);</div>
<div class="line"><a name="l00329"></a><span class="lineno"> 329</span>  }</div>
<div class="line"><a name="l00330"></a><span class="lineno"> 330</span>  <a class="code" href="class_flux.html">Flux</a> F_model( <a class="code" href="optimize_8cpp.html#ad9c1c492528e865ade1aeae90a429054">optimize</a>.<a class="code" href="structt__optimize.html#a5668b5351f09dba5defb23a154eaf31b">ContNFnu</a>[k].E(), nFnu_model );</div>
<div class="line"><a name="l00331"></a><span class="lineno"> 331</span> </div>
<div class="line"><a name="l00332"></a><span class="lineno"> 332</span>  chi1 = <a class="code" href="optimize__func_8cpp.html#a7630974ee828b586108aed1f8499337b">chi2_func</a>(nFnu_model,<a class="code" href="optimize_8cpp.html#ad9c1c492528e865ade1aeae90a429054">optimize</a>.<a class="code" href="structt__optimize.html#a5668b5351f09dba5defb23a154eaf31b">ContNFnu</a>[k].get(<span class="stringliteral">"erg/s/cm2"</span>),<a class="code" href="optimize_8cpp.html#ad9c1c492528e865ade1aeae90a429054">optimize</a>.<a class="code" href="structt__optimize.html#ab81140e20c08913108dacf4ef590996a">ContNFnuErr</a>[k]);</div>
<div class="line"><a name="l00333"></a><span class="lineno"> 333</span>  <span class="keyword">const</span> <span class="keywordtype">char</span>* catstr;</div>
<div class="line"><a name="l00334"></a><span class="lineno"> 334</span>  <span class="comment">// treat radio continuum flux as absolute flux so that it can be used</span></div>
<div class="line"><a name="l00335"></a><span class="lineno"> 335</span>  <span class="comment">// as a more accurate replacement of the normalization line intensity</span></div>
<div class="line"><a name="l00336"></a><span class="lineno"> 336</span>  <span class="keywordflow">if</span>( <a class="code" href="optimize_8cpp.html#ad9c1c492528e865ade1aeae90a429054">optimize</a>.<a class="code" href="structt__optimize.html#ae2b5ffcbd11ec4e496426f8c03888ebb">ContEner</a>[k].mm() <= 1. )</div>
<div class="line"><a name="l00337"></a><span class="lineno"> 337</span>  {</div>
<div class="line"><a name="l00338"></a><span class="lineno"> 338</span>  cat = 5;</div>
<div class="line"><a name="l00339"></a><span class="lineno"> 339</span>  catstr = <span class="stringliteral">"Photometry"</span>;</div>
<div class="line"><a name="l00340"></a><span class="lineno"> 340</span>  }</div>
<div class="line"><a name="l00341"></a><span class="lineno"> 341</span>  <span class="keywordflow">else</span></div>
<div class="line"><a name="l00342"></a><span class="lineno"> 342</span>  {</div>
<div class="line"><a name="l00343"></a><span class="lineno"> 343</span>  cat = 2;</div>
<div class="line"><a name="l00344"></a><span class="lineno"> 344</span>  catstr = <span class="stringliteral">"Radio intensity"</span>;</div>
<div class="line"><a name="l00345"></a><span class="lineno"> 345</span>  }</div>
<div class="line"><a name="l00346"></a><span class="lineno"> 346</span>  nobs_cat[cat]++;</div>
<div class="line"><a name="l00347"></a><span class="lineno"> 347</span>  chi2_cat[cat] += chi1;</div>
<div class="line"><a name="l00348"></a><span class="lineno"> 348</span> </div>
<div class="line"><a name="l00349"></a><span class="lineno"> 349</span>  fprintf( <a class="code" href="cddefines_8cpp.html#a94bc49f6569c17375ac7fbf6a66f6dd0">ioQQQ</a>, <span class="stringliteral">" %4.4s "</span>, <a class="code" href="cdinit_8cpp.html#ae3959fad824c48b8fa4f06a0fb8867f4">LineSv</a>[ind].chALab);</div>
<div class="line"><a name="l00350"></a><span class="lineno"> 350</span>  <a class="code" href="prt_8cpp.html#a00df8d844a4afc984dfbd0fff696acb3">prt_wl</a>( <a class="code" href="cddefines_8cpp.html#a94bc49f6569c17375ac7fbf6a66f6dd0">ioQQQ</a>,<a class="code" href="cdinit_8cpp.html#ae3959fad824c48b8fa4f06a0fb8867f4">LineSv</a>[ind].<a class="code" href="monitor__results_8cpp.html#a7629028bdcaca41fec58cbd3baa8147a">wavelength</a>);</div>
<div class="line"><a name="l00351"></a><span class="lineno"> 351</span>  <span class="keywordtype">string</span> unit = <a class="code" href="optimize_8cpp.html#ad9c1c492528e865ade1aeae90a429054">optimize</a>.<a class="code" href="structt__optimize.html#a5668b5351f09dba5defb23a154eaf31b">ContNFnu</a>[k].uu();</div>
<div class="line"><a name="l00352"></a><span class="lineno"> 352</span>  fprintf( <a class="code" href="cddefines_8cpp.html#a94bc49f6569c17375ac7fbf6a66f6dd0">ioQQQ</a>, <span class="stringliteral">"%12.4g%12.4g%12.5f%12.2e %s [%s]\n"</span>, </div>
<div class="line"><a name="l00353"></a><span class="lineno"> 353</span>  F_model.get(unit),</div>
<div class="line"><a name="l00354"></a><span class="lineno"> 354</span>  <a class="code" href="optimize_8cpp.html#ad9c1c492528e865ade1aeae90a429054">optimize</a>.<a class="code" href="structt__optimize.html#a5668b5351f09dba5defb23a154eaf31b">ContNFnu</a>[k].get(unit),</div>
<div class="line"><a name="l00355"></a><span class="lineno"> 355</span>  <a class="code" href="optimize_8cpp.html#ad9c1c492528e865ade1aeae90a429054">optimize</a>.<a class="code" href="structt__optimize.html#ab81140e20c08913108dacf4ef590996a">ContNFnuErr</a>[k], chi1,</div>
<div class="line"><a name="l00356"></a><span class="lineno"> 356</span>  catstr, unit.c_str() );</div>
<div class="line"><a name="l00357"></a><span class="lineno"> 357</span>  }</div>
<div class="line"><a name="l00358"></a><span class="lineno"> 358</span> </div>
<div class="line"><a name="l00359"></a><span class="lineno"> 359</span>  <span class="comment">/* option to optimize angular diamater */</span></div>
<div class="line"><a name="l00360"></a><span class="lineno"> 360</span>  <span class="keywordflow">if</span>( <a class="code" href="optimize_8cpp.html#ad9c1c492528e865ade1aeae90a429054">optimize</a>.<a class="code" href="structt__optimize.html#a33c8400b89b41c753ce60b262440525f">lgOptDiam</a> )</div>
<div class="line"><a name="l00361"></a><span class="lineno"> 361</span>  {</div>
<div class="line"><a name="l00362"></a><span class="lineno"> 362</span>  nfound++;</div>
<div class="line"><a name="l00363"></a><span class="lineno"> 363</span>  <a class="code" href="optimize_8h.html#a5846ad020ddaf38b0a183086a05196bf">chi2_type</a> diam_model;</div>
<div class="line"><a name="l00364"></a><span class="lineno"> 364</span>  <span class="comment">// get diameter in cm</span></div>
<div class="line"><a name="l00365"></a><span class="lineno"> 365</span>  <span class="keywordflow">if</span>( <a class="code" href="rfield_8cpp.html#ae577590833d90679b27a7e2b237ee667">rfield</a>.<a class="code" href="structt__rfield.html#a1ef47acedddeaa42a3747f1353549005">lgUSphON</a> )</div>
<div class="line"><a name="l00366"></a><span class="lineno"> 366</span>  diam_model = 2.*<a class="code" href="rfield_8cpp.html#ae577590833d90679b27a7e2b237ee667">rfield</a>.<a class="code" href="structt__rfield.html#afa5ca1424cfa35f5a933aacfd69dd4de">rstrom</a>; <span class="comment">// ionization bounded -> use Stroemgren radius</span></div>
<div class="line"><a name="l00367"></a><span class="lineno"> 367</span>  <span class="keywordflow">else</span></div>
<div class="line"><a name="l00368"></a><span class="lineno"> 368</span>  diam_model = 2.*<a class="code" href="radius_8cpp.html#ad57f06f64461f4325506113ba07f29fa">radius</a>.<a class="code" href="structt__radius.html#af333bba77be0c400d735bf3fb0ce5f52">Radius</a>; <span class="comment">// density bounded -> use outer radius</span></div>
<div class="line"><a name="l00369"></a><span class="lineno"> 369</span>  <span class="comment">// now convert to arcsec if necessary</span></div>
<div class="line"><a name="l00370"></a><span class="lineno"> 370</span>  <span class="keywordflow">if</span>( !<a class="code" href="optimize_8cpp.html#ad9c1c492528e865ade1aeae90a429054">optimize</a>.<a class="code" href="structt__optimize.html#aa81e6b305b6f40fc1de77d7e1cda69ab">lgDiamInCM</a> && <a class="code" href="radius_8cpp.html#ad57f06f64461f4325506113ba07f29fa">radius</a>.<a class="code" href="structt__radius.html#add9394be9b6a7419684b1c8da1a1d092">distance</a> > 0. )</div>
<div class="line"><a name="l00371"></a><span class="lineno"> 371</span>  diam_model *= <a class="code" href="physconst_8h.html#ab314a6d31265b17ea7833f0bbb5d5951">AS1RAD</a>/<a class="code" href="radius_8cpp.html#ad57f06f64461f4325506113ba07f29fa">radius</a>.<a class="code" href="structt__radius.html#add9394be9b6a7419684b1c8da1a1d092">distance</a>;</div>
<div class="line"><a name="l00372"></a><span class="lineno"> 372</span> </div>
<div class="line"><a name="l00373"></a><span class="lineno"> 373</span>  chi1 = <a class="code" href="optimize__func_8cpp.html#a7630974ee828b586108aed1f8499337b">chi2_func</a>(diam_model,<a class="code" href="optimize_8cpp.html#ad9c1c492528e865ade1aeae90a429054">optimize</a>.<a class="code" href="structt__optimize.html#aabb92adc1c3fe5167cf2cf9a7c6b3a2b">optDiam</a>,<a class="code" href="optimize_8cpp.html#ad9c1c492528e865ade1aeae90a429054">optimize</a>.<a class="code" href="structt__optimize.html#a90dccece22770aea48900ccaea4449a6">optDiamErr</a>);</div>
<div class="line"><a name="l00374"></a><span class="lineno"> 374</span>  cat = 4;</div>
<div class="line"><a name="l00375"></a><span class="lineno"> 375</span>  nobs_cat[cat]++;</div>
<div class="line"><a name="l00376"></a><span class="lineno"> 376</span>  chi2_cat[cat] += chi1;</div>
<div class="line"><a name="l00377"></a><span class="lineno"> 377</span> </div>
<div class="line"><a name="l00378"></a><span class="lineno"> 378</span>  fprintf( <a class="code" href="cddefines_8cpp.html#a94bc49f6569c17375ac7fbf6a66f6dd0">ioQQQ</a>, <span class="stringliteral">" %12.4g%12.4g%12.5f%12.2e Angular diameter\n"</span>, </div>
<div class="line"><a name="l00379"></a><span class="lineno"> 379</span>  diam_model, <a class="code" href="optimize_8cpp.html#ad9c1c492528e865ade1aeae90a429054">optimize</a>.<a class="code" href="structt__optimize.html#aabb92adc1c3fe5167cf2cf9a7c6b3a2b">optDiam</a>, <a class="code" href="optimize_8cpp.html#ad9c1c492528e865ade1aeae90a429054">optimize</a>.<a class="code" href="structt__optimize.html#a90dccece22770aea48900ccaea4449a6">optDiamErr</a>, chi1 );</div>
<div class="line"><a name="l00380"></a><span class="lineno"> 380</span>  }</div>
<div class="line"><a name="l00381"></a><span class="lineno"> 381</span> </div>
<div class="line"><a name="l00382"></a><span class="lineno"> 382</span>  <span class="comment">/* do not have to have line matches if doing grid. */</span></div>
<div class="line"><a name="l00383"></a><span class="lineno"> 383</span>  <span class="keywordflow">if</span>( nfound <= 0 && !<a class="code" href="grid_8cpp.html#ac406de68bde71a8f6eb5674abb0529b9">grid</a>.<a class="code" href="structt__grid.html#a34ce941222843fd76524e95568d4c0cd">lgGrid</a> )</div>
<div class="line"><a name="l00384"></a><span class="lineno"> 384</span>  {</div>
<div class="line"><a name="l00385"></a><span class="lineno"> 385</span>  fprintf( <a class="code" href="cddefines_8cpp.html#a94bc49f6569c17375ac7fbf6a66f6dd0">ioQQQ</a>, <span class="stringliteral">" WARNING; no line matches found\n"</span> );</div>
<div class="line"><a name="l00386"></a><span class="lineno"> 386</span>  <a class="code" href="cddefines_8h.html#a937636e18a3a517d1aeb2c111adb5160">cdEXIT</a>(<a class="code" href="cddefines_8h.html#a73efe787c131b385070f25d18b7c9aa4">EXIT_FAILURE</a>);</div>
<div class="line"><a name="l00387"></a><span class="lineno"> 387</span>  }</div>
<div class="line"><a name="l00388"></a><span class="lineno"> 388</span> </div>
<div class="line"><a name="l00389"></a><span class="lineno"> 389</span>  <span class="comment">/* write out chisquared for this iteration */</span></div>
<div class="line"><a name="l00390"></a><span class="lineno"> 390</span>  fprintf( <a class="code" href="cddefines_8cpp.html#a94bc49f6569c17375ac7fbf6a66f6dd0">ioQQQ</a>, <span class="stringliteral">"\n"</span> );</div>
<div class="line"><a name="l00391"></a><span class="lineno"> 391</span>  <span class="keywordflow">for</span>( i=0; i < MAXCAT; i++ )</div>
<div class="line"><a name="l00392"></a><span class="lineno"> 392</span>  {</div>
<div class="line"><a name="l00393"></a><span class="lineno"> 393</span>  <span class="keywordflow">if</span>( nobs_cat[i] > 0 )</div>
<div class="line"><a name="l00394"></a><span class="lineno"> 394</span>  {</div>
<div class="line"><a name="l00395"></a><span class="lineno"> 395</span>  chisq += chi2_cat[i]/nobs_cat[i];</div>
<div class="line"><a name="l00396"></a><span class="lineno"> 396</span>  fprintf( <a class="code" href="cddefines_8cpp.html#a94bc49f6569c17375ac7fbf6a66f6dd0">ioQQQ</a>, <span class="stringliteral">" Category %s #obs.%3ld Total Chi**2%11.3e Average Chi**2%11.3e\n"</span>,</div>
<div class="line"><a name="l00397"></a><span class="lineno"> 397</span>  name_cat[i],nobs_cat[i],chi2_cat[i],chi2_cat[i]/nobs_cat[i] );</div>
<div class="line"><a name="l00398"></a><span class="lineno"> 398</span>  }</div>
<div class="line"><a name="l00399"></a><span class="lineno"> 399</span>  }</div>
<div class="line"><a name="l00400"></a><span class="lineno"> 400</span>  <span class="keywordflow">if</span>( nfound )</div>
<div class="line"><a name="l00401"></a><span class="lineno"> 401</span>  {</div>
<div class="line"><a name="l00402"></a><span class="lineno"> 402</span>  fprintf( <a class="code" href="cddefines_8cpp.html#a94bc49f6569c17375ac7fbf6a66f6dd0">ioQQQ</a>, <span class="stringliteral">"\n Iteration%4ld Chisq=%13.5e\n"</span>, <a class="code" href="optimize_8cpp.html#ad9c1c492528e865ade1aeae90a429054">optimize</a>.<a class="code" href="structt__optimize.html#a392f241ceb4d737760f27c75d30de897">nOptimiz</a>, chisq );</div>
<div class="line"><a name="l00403"></a><span class="lineno"> 403</span>  }</div>
<div class="line"><a name="l00404"></a><span class="lineno"> 404</span>  }</div>
<div class="line"><a name="l00405"></a><span class="lineno"> 405</span> </div>
<div class="line"><a name="l00406"></a><span class="lineno"> 406</span>  <span class="comment">/* increment nOptimiz, the grid / optimizer counter */</span></div>
<div class="line"><a name="l00407"></a><span class="lineno"> 407</span>  ++<a class="code" href="optimize_8cpp.html#ad9c1c492528e865ade1aeae90a429054">optimize</a>.<a class="code" href="structt__optimize.html#a392f241ceb4d737760f27c75d30de897">nOptimiz</a>;</div>
<div class="line"><a name="l00408"></a><span class="lineno"> 408</span> </div>
<div class="line"><a name="l00409"></a><span class="lineno"> 409</span>  <span class="comment">/* only print this if output has been turned on */</span></div>
<div class="line"><a name="l00410"></a><span class="lineno"> 410</span>  <span class="keywordflow">if</span>( <a class="code" href="called_8cpp.html#aee8b9d066c56b63ee5195666abd874f3">called</a>.<a class="code" href="structt__called.html#a637dca49e1651bde0439e7da1e74d155">lgTalk</a> )</div>
<div class="line"><a name="l00411"></a><span class="lineno"> 411</span>  {</div>
<div class="line"><a name="l00412"></a><span class="lineno"> 412</span>  fprintf( <a class="code" href="cddefines_8cpp.html#a94bc49f6569c17375ac7fbf6a66f6dd0">ioQQQ</a>, <span class="stringliteral">"\n"</span> );</div>
<div class="line"><a name="l00413"></a><span class="lineno"> 413</span>  <span class="keywordflow">for</span>( i=0; i < <a class="code" href="optimize_8cpp.html#ad9c1c492528e865ade1aeae90a429054">optimize</a>.<a class="code" href="structt__optimize.html#a5be42c3cf9b64d79ddea853de6d5f10f">nvary</a>; i++ )</div>
<div class="line"><a name="l00414"></a><span class="lineno"> 414</span>  {</div>
<div class="line"><a name="l00415"></a><span class="lineno"> 415</span>  np = <a class="code" href="optimize_8cpp.html#ad9c1c492528e865ade1aeae90a429054">optimize</a>.<a class="code" href="structt__optimize.html#aeb3b28d6646039bf4960d15ce4774e24">nvfpnt</a>[i];</div>
<div class="line"><a name="l00416"></a><span class="lineno"> 416</span> </div>
<div class="line"><a name="l00417"></a><span class="lineno"> 417</span>  <span class="comment">/* now generate the actual command with parameter,</span></div>
<div class="line"><a name="l00418"></a><span class="lineno"> 418</span> <span class="comment"> * there will be from 1 to 3 numbers on the line */</span></div>
<div class="line"><a name="l00419"></a><span class="lineno"> 419</span>  <span class="keywordflow">if</span>( <a class="code" href="optimize_8cpp.html#ad9c1c492528e865ade1aeae90a429054">optimize</a>.<a class="code" href="structt__optimize.html#a967997b4c7075c5ae851e43cd22be93e">nvarxt</a>[i] == 1 )</div>
<div class="line"><a name="l00420"></a><span class="lineno"> 420</span>  {</div>
<div class="line"><a name="l00421"></a><span class="lineno"> 421</span>  <span class="comment">/* case with 1 parameter */</span></div>
<div class="line"><a name="l00422"></a><span class="lineno"> 422</span>  sprintf( <a class="code" href="input_8cpp.html#a79ef9860d57798efe65aeb1e7ff8ea01">input</a>.<a class="code" href="structt__input.html#ae1282ce92a528597572b8ad0f8216382">chCardSav</a>[np], <a class="code" href="optimize_8cpp.html#ad9c1c492528e865ade1aeae90a429054">optimize</a>.<a class="code" href="structt__optimize.html#aad77d2eede243752d675904e31677f2b">chVarFmt</a>[i], <a class="code" href="optimize_8cpp.html#ad9c1c492528e865ade1aeae90a429054">optimize</a>.<a class="code" href="structt__optimize.html#a61fab5b0f2116787dde71f83a323e98f">vparm</a>[0][i] );</div>
<div class="line"><a name="l00423"></a><span class="lineno"> 423</span>  }</div>
<div class="line"><a name="l00424"></a><span class="lineno"> 424</span> </div>
<div class="line"><a name="l00425"></a><span class="lineno"> 425</span>  <span class="keywordflow">else</span> <span class="keywordflow">if</span>( <a class="code" href="optimize_8cpp.html#ad9c1c492528e865ade1aeae90a429054">optimize</a>.<a class="code" href="structt__optimize.html#a967997b4c7075c5ae851e43cd22be93e">nvarxt</a>[i] == 2 )</div>
<div class="line"><a name="l00426"></a><span class="lineno"> 426</span>  {</div>
<div class="line"><a name="l00427"></a><span class="lineno"> 427</span>  <span class="comment">/* case with 2 parameter */</span></div>
<div class="line"><a name="l00428"></a><span class="lineno"> 428</span>  sprintf( <a class="code" href="input_8cpp.html#a79ef9860d57798efe65aeb1e7ff8ea01">input</a>.<a class="code" href="structt__input.html#ae1282ce92a528597572b8ad0f8216382">chCardSav</a>[np], <a class="code" href="optimize_8cpp.html#ad9c1c492528e865ade1aeae90a429054">optimize</a>.<a class="code" href="structt__optimize.html#aad77d2eede243752d675904e31677f2b">chVarFmt</a>[i], <a class="code" href="optimize_8cpp.html#ad9c1c492528e865ade1aeae90a429054">optimize</a>.<a class="code" href="structt__optimize.html#a61fab5b0f2116787dde71f83a323e98f">vparm</a>[0][i],</div>
<div class="line"><a name="l00429"></a><span class="lineno"> 429</span>  <a class="code" href="optimize_8cpp.html#ad9c1c492528e865ade1aeae90a429054">optimize</a>.<a class="code" href="structt__optimize.html#a61fab5b0f2116787dde71f83a323e98f">vparm</a>[1][i]);</div>
<div class="line"><a name="l00430"></a><span class="lineno"> 430</span>  }</div>
<div class="line"><a name="l00431"></a><span class="lineno"> 431</span> </div>
<div class="line"><a name="l00432"></a><span class="lineno"> 432</span>  <span class="keywordflow">else</span> <span class="keywordflow">if</span>( <a class="code" href="optimize_8cpp.html#ad9c1c492528e865ade1aeae90a429054">optimize</a>.<a class="code" href="structt__optimize.html#a967997b4c7075c5ae851e43cd22be93e">nvarxt</a>[i] == 3 )</div>
<div class="line"><a name="l00433"></a><span class="lineno"> 433</span>  {</div>
<div class="line"><a name="l00434"></a><span class="lineno"> 434</span>  <span class="comment">/* case with 3 parameter */</span></div>
<div class="line"><a name="l00435"></a><span class="lineno"> 435</span>  sprintf( <a class="code" href="input_8cpp.html#a79ef9860d57798efe65aeb1e7ff8ea01">input</a>.<a class="code" href="structt__input.html#ae1282ce92a528597572b8ad0f8216382">chCardSav</a>[np], <a class="code" href="optimize_8cpp.html#ad9c1c492528e865ade1aeae90a429054">optimize</a>.<a class="code" href="structt__optimize.html#aad77d2eede243752d675904e31677f2b">chVarFmt</a>[i], </div>
<div class="line"><a name="l00436"></a><span class="lineno"> 436</span>  <a class="code" href="optimize_8cpp.html#ad9c1c492528e865ade1aeae90a429054">optimize</a>.<a class="code" href="structt__optimize.html#a61fab5b0f2116787dde71f83a323e98f">vparm</a>[0][i], <a class="code" href="optimize_8cpp.html#ad9c1c492528e865ade1aeae90a429054">optimize</a>.<a class="code" href="structt__optimize.html#a61fab5b0f2116787dde71f83a323e98f">vparm</a>[1][i], <a class="code" href="optimize_8cpp.html#ad9c1c492528e865ade1aeae90a429054">optimize</a>.<a class="code" href="structt__optimize.html#a61fab5b0f2116787dde71f83a323e98f">vparm</a>[2][i] );</div>
<div class="line"><a name="l00437"></a><span class="lineno"> 437</span>  }</div>
<div class="line"><a name="l00438"></a><span class="lineno"> 438</span> </div>
<div class="line"><a name="l00439"></a><span class="lineno"> 439</span>  <span class="keywordflow">else</span> <span class="keywordflow">if</span>( <a class="code" href="optimize_8cpp.html#ad9c1c492528e865ade1aeae90a429054">optimize</a>.<a class="code" href="structt__optimize.html#a967997b4c7075c5ae851e43cd22be93e">nvarxt</a>[i] == 4 )</div>
<div class="line"><a name="l00440"></a><span class="lineno"> 440</span>  {</div>
<div class="line"><a name="l00441"></a><span class="lineno"> 441</span>  <span class="comment">/* case with 4 parameter */</span></div>
<div class="line"><a name="l00442"></a><span class="lineno"> 442</span>  sprintf( <a class="code" href="input_8cpp.html#a79ef9860d57798efe65aeb1e7ff8ea01">input</a>.<a class="code" href="structt__input.html#ae1282ce92a528597572b8ad0f8216382">chCardSav</a>[np], <a class="code" href="optimize_8cpp.html#ad9c1c492528e865ade1aeae90a429054">optimize</a>.<a class="code" href="structt__optimize.html#aad77d2eede243752d675904e31677f2b">chVarFmt</a>[i], </div>
<div class="line"><a name="l00443"></a><span class="lineno"> 443</span>  <a class="code" href="optimize_8cpp.html#ad9c1c492528e865ade1aeae90a429054">optimize</a>.<a class="code" href="structt__optimize.html#a61fab5b0f2116787dde71f83a323e98f">vparm</a>[0][i], <a class="code" href="optimize_8cpp.html#ad9c1c492528e865ade1aeae90a429054">optimize</a>.<a class="code" href="structt__optimize.html#a61fab5b0f2116787dde71f83a323e98f">vparm</a>[1][i], <a class="code" href="optimize_8cpp.html#ad9c1c492528e865ade1aeae90a429054">optimize</a>.<a class="code" href="structt__optimize.html#a61fab5b0f2116787dde71f83a323e98f">vparm</a>[2][i],</div>
<div class="line"><a name="l00444"></a><span class="lineno"> 444</span>  <a class="code" href="optimize_8cpp.html#ad9c1c492528e865ade1aeae90a429054">optimize</a>.<a class="code" href="structt__optimize.html#a61fab5b0f2116787dde71f83a323e98f">vparm</a>[3][i] );</div>
<div class="line"><a name="l00445"></a><span class="lineno"> 445</span>  }</div>
<div class="line"><a name="l00446"></a><span class="lineno"> 446</span> </div>
<div class="line"><a name="l00447"></a><span class="lineno"> 447</span>  <span class="keywordflow">else</span> <span class="keywordflow">if</span>( <a class="code" href="optimize_8cpp.html#ad9c1c492528e865ade1aeae90a429054">optimize</a>.<a class="code" href="structt__optimize.html#a967997b4c7075c5ae851e43cd22be93e">nvarxt</a>[i] == 5 )</div>
<div class="line"><a name="l00448"></a><span class="lineno"> 448</span>  {</div>
<div class="line"><a name="l00449"></a><span class="lineno"> 449</span>  <span class="comment">/* case with 5 parameter */</span></div>
<div class="line"><a name="l00450"></a><span class="lineno"> 450</span>  sprintf( <a class="code" href="input_8cpp.html#a79ef9860d57798efe65aeb1e7ff8ea01">input</a>.<a class="code" href="structt__input.html#ae1282ce92a528597572b8ad0f8216382">chCardSav</a>[np], <a class="code" href="optimize_8cpp.html#ad9c1c492528e865ade1aeae90a429054">optimize</a>.<a class="code" href="structt__optimize.html#aad77d2eede243752d675904e31677f2b">chVarFmt</a>[i], </div>
<div class="line"><a name="l00451"></a><span class="lineno"> 451</span>  <a class="code" href="optimize_8cpp.html#ad9c1c492528e865ade1aeae90a429054">optimize</a>.<a class="code" href="structt__optimize.html#a61fab5b0f2116787dde71f83a323e98f">vparm</a>[0][i], <a class="code" href="optimize_8cpp.html#ad9c1c492528e865ade1aeae90a429054">optimize</a>.<a class="code" href="structt__optimize.html#a61fab5b0f2116787dde71f83a323e98f">vparm</a>[1][i], <a class="code" href="optimize_8cpp.html#ad9c1c492528e865ade1aeae90a429054">optimize</a>.<a class="code" href="structt__optimize.html#a61fab5b0f2116787dde71f83a323e98f">vparm</a>[2][i],</div>
<div class="line"><a name="l00452"></a><span class="lineno"> 452</span>  <a class="code" href="optimize_8cpp.html#ad9c1c492528e865ade1aeae90a429054">optimize</a>.<a class="code" href="structt__optimize.html#a61fab5b0f2116787dde71f83a323e98f">vparm</a>[3][i], <a class="code" href="optimize_8cpp.html#ad9c1c492528e865ade1aeae90a429054">optimize</a>.<a class="code" href="structt__optimize.html#a61fab5b0f2116787dde71f83a323e98f">vparm</a>[4][i]);</div>
<div class="line"><a name="l00453"></a><span class="lineno"> 453</span>  }</div>
<div class="line"><a name="l00454"></a><span class="lineno"> 454</span> </div>
<div class="line"><a name="l00455"></a><span class="lineno"> 455</span>  <span class="keywordflow">else</span></div>
<div class="line"><a name="l00456"></a><span class="lineno"> 456</span>  {</div>
<div class="line"><a name="l00457"></a><span class="lineno"> 457</span>  fprintf(<a class="code" href="cddefines_8cpp.html#a94bc49f6569c17375ac7fbf6a66f6dd0">ioQQQ</a>,<span class="stringliteral">"The number of variable options on this line makes no sense to me4\n"</span>);</div>
<div class="line"><a name="l00458"></a><span class="lineno"> 458</span>  <a class="code" href="cddefines_8h.html#a937636e18a3a517d1aeb2c111adb5160">cdEXIT</a>(<a class="code" href="cddefines_8h.html#a73efe787c131b385070f25d18b7c9aa4">EXIT_FAILURE</a>);</div>
<div class="line"><a name="l00459"></a><span class="lineno"> 459</span>  }</div>
<div class="line"><a name="l00460"></a><span class="lineno"> 460</span> </div>
<div class="line"><a name="l00461"></a><span class="lineno"> 461</span>  fprintf( <a class="code" href="cddefines_8cpp.html#a94bc49f6569c17375ac7fbf6a66f6dd0">ioQQQ</a>, <span class="stringliteral">" Varied command: %s\n"</span>, </div>
<div class="line"><a name="l00462"></a><span class="lineno"> 462</span>  <a class="code" href="input_8cpp.html#a79ef9860d57798efe65aeb1e7ff8ea01">input</a>.<a class="code" href="structt__input.html#ae1282ce92a528597572b8ad0f8216382">chCardSav</a>[np] );</div>
<div class="line"><a name="l00463"></a><span class="lineno"> 463</span>  }</div>
<div class="line"><a name="l00464"></a><span class="lineno"> 464</span>  }</div>
<div class="line"><a name="l00465"></a><span class="lineno"> 465</span> </div>
<div class="line"><a name="l00466"></a><span class="lineno"> 466</span>  <span class="keywordflow">return</span> <a class="code" href="cddefines_8h.html#ae6ecbd79f3ed104df8afd4c7e53a1c06">min</a>(chisq,<a class="code" href="optimize_8h.html#a80ac847a91c9a7dce079921a5e42e16b">BIG_CHI2</a>);</div>
<div class="line"><a name="l00467"></a><span class="lineno"> 467</span> }</div>
<div class="line"><a name="l00468"></a><span class="lineno"> 468</span> </div>
<div class="line"><a name="l00469"></a><span class="lineno"> 469</span> <span class="comment">/* ============================================================================== */</span></div>
<div class="line"><a name="l00470"></a><span class="lineno"><a class="line" href="optimize__func_8cpp.html#a7630974ee828b586108aed1f8499337b"> 470</a></span> <a class="code" href="cddefines_8h.html#a10b2d890d871e1489bb02b7e70d9bdfb">STATIC</a> <a class="code" href="optimize_8h.html#a5846ad020ddaf38b0a183086a05196bf">chi2_type</a> <a class="code" href="optimize__func_8cpp.html#a7630974ee828b586108aed1f8499337b">chi2_func</a>(<a class="code" href="optimize_8h.html#a5846ad020ddaf38b0a183086a05196bf">chi2_type</a> ymodl,</div>
<div class="line"><a name="l00471"></a><span class="lineno"> 471</span>  <a class="code" href="optimize_8h.html#a5846ad020ddaf38b0a183086a05196bf">chi2_type</a> ymeas,</div>
<div class="line"><a name="l00472"></a><span class="lineno"> 472</span>  <a class="code" href="optimize_8h.html#a5846ad020ddaf38b0a183086a05196bf">chi2_type</a> yerr)</div>
<div class="line"><a name="l00473"></a><span class="lineno"> 473</span> {</div>
<div class="line"><a name="l00474"></a><span class="lineno"> 474</span>  <a class="code" href="optimize_8h.html#a5846ad020ddaf38b0a183086a05196bf">chi2_type</a> chi2_func_v,</div>
<div class="line"><a name="l00475"></a><span class="lineno"> 475</span>  temp;</div>
<div class="line"><a name="l00476"></a><span class="lineno"> 476</span> </div>
<div class="line"><a name="l00477"></a><span class="lineno"> 477</span>  <a class="code" href="cddefines_8h.html#ada0cfa6927ba3683adc971d17643f2e5">DEBUG_ENTRY</a>( <span class="stringliteral">"chi2_func()"</span> );</div>
<div class="line"><a name="l00478"></a><span class="lineno"> 478</span> </div>
<div class="line"><a name="l00479"></a><span class="lineno"> 479</span>  <span class="comment">/* compute chi**2 by comparing model quantity ymodl with a measured</span></div>
<div class="line"><a name="l00480"></a><span class="lineno"> 480</span> <span class="comment"> * quantity ymeas with relative error yerr (negative means upper limit)</span></div>
<div class="line"><a name="l00481"></a><span class="lineno"> 481</span> <span class="comment"> */</span></div>
<div class="line"><a name="l00482"></a><span class="lineno"> 482</span> </div>
<div class="line"><a name="l00483"></a><span class="lineno"> 483</span>  <span class="keywordflow">if</span>( ymeas <= 0. )</div>
<div class="line"><a name="l00484"></a><span class="lineno"> 484</span>  {</div>
<div class="line"><a name="l00485"></a><span class="lineno"> 485</span>  fprintf( <a class="code" href="cddefines_8cpp.html#a94bc49f6569c17375ac7fbf6a66f6dd0">ioQQQ</a>, <span class="stringliteral">"chi2_func: non-positive observed quantity, this should not happen\n"</span> );</div>
<div class="line"><a name="l00486"></a><span class="lineno"> 486</span>  <a class="code" href="cddefines_8h.html#a937636e18a3a517d1aeb2c111adb5160">cdEXIT</a>(<a class="code" href="cddefines_8h.html#a73efe787c131b385070f25d18b7c9aa4">EXIT_FAILURE</a>);</div>
<div class="line"><a name="l00487"></a><span class="lineno"> 487</span>  }</div>
<div class="line"><a name="l00488"></a><span class="lineno"> 488</span> </div>
<div class="line"><a name="l00489"></a><span class="lineno"> 489</span>  <span class="keywordflow">if</span>( yerr > 0. )</div>
<div class="line"><a name="l00490"></a><span class="lineno"> 490</span>  {</div>
<div class="line"><a name="l00491"></a><span class="lineno"> 491</span>  <span class="keywordflow">if</span>( ymodl > 0. )</div>
<div class="line"><a name="l00492"></a><span class="lineno"> 492</span>  {</div>
<div class="line"><a name="l00493"></a><span class="lineno"> 493</span>  temp = <a class="code" href="cddefines_8h.html#a34a972cf4be2379a5ee363b82d623b3a">pow2</a>((ymodl-ymeas)/(<a class="code" href="cddefines_8h.html#ae6ecbd79f3ed104df8afd4c7e53a1c06">min</a>(ymodl,ymeas)*yerr));</div>
<div class="line"><a name="l00494"></a><span class="lineno"> 494</span>  chi2_func_v = <a class="code" href="cddefines_8h.html#ae6ecbd79f3ed104df8afd4c7e53a1c06">min</a>(temp,<a class="code" href="optimize_8h.html#a80ac847a91c9a7dce079921a5e42e16b">BIG_CHI2</a>);</div>
<div class="line"><a name="l00495"></a><span class="lineno"> 495</span>  }</div>
<div class="line"><a name="l00496"></a><span class="lineno"> 496</span>  <span class="keywordflow">else</span></div>
<div class="line"><a name="l00497"></a><span class="lineno"> 497</span>  chi2_func_v = <a class="code" href="optimize_8h.html#a80ac847a91c9a7dce079921a5e42e16b">BIG_CHI2</a>;</div>
<div class="line"><a name="l00498"></a><span class="lineno"> 498</span>  }</div>
<div class="line"><a name="l00499"></a><span class="lineno"> 499</span>  <span class="keywordflow">else</span> <span class="keywordflow">if</span>( yerr < 0. )</div>
<div class="line"><a name="l00500"></a><span class="lineno"> 500</span>  {</div>
<div class="line"><a name="l00501"></a><span class="lineno"> 501</span>  <span class="comment">/* value quoted is an upper limit, so add to chisq</span></div>
<div class="line"><a name="l00502"></a><span class="lineno"> 502</span> <span class="comment"> * only if limit exceeded, otherwise return zero.</span></div>
<div class="line"><a name="l00503"></a><span class="lineno"> 503</span> <span class="comment"> */</span></div>
<div class="line"><a name="l00504"></a><span class="lineno"> 504</span>  <span class="keywordflow">if</span>( ymodl > ymeas )</div>
<div class="line"><a name="l00505"></a><span class="lineno"> 505</span>  {</div>
<div class="line"><a name="l00506"></a><span class="lineno"> 506</span>  temp = <a class="code" href="cddefines_8h.html#a34a972cf4be2379a5ee363b82d623b3a">pow2</a>((ymodl-ymeas)/(ymeas*yerr));</div>
<div class="line"><a name="l00507"></a><span class="lineno"> 507</span>  chi2_func_v = <a class="code" href="cddefines_8h.html#ae6ecbd79f3ed104df8afd4c7e53a1c06">min</a>(temp,<a class="code" href="optimize_8h.html#a80ac847a91c9a7dce079921a5e42e16b">BIG_CHI2</a>);</div>
<div class="line"><a name="l00508"></a><span class="lineno"> 508</span>  }</div>
<div class="line"><a name="l00509"></a><span class="lineno"> 509</span>  <span class="keywordflow">else</span></div>
<div class="line"><a name="l00510"></a><span class="lineno"> 510</span>  chi2_func_v = 0.;</div>
<div class="line"><a name="l00511"></a><span class="lineno"> 511</span>  }</div>
<div class="line"><a name="l00512"></a><span class="lineno"> 512</span>  <span class="keywordflow">else</span></div>
<div class="line"><a name="l00513"></a><span class="lineno"> 513</span>  {</div>
<div class="line"><a name="l00514"></a><span class="lineno"> 514</span>  fprintf( <a class="code" href="cddefines_8cpp.html#a94bc49f6569c17375ac7fbf6a66f6dd0">ioQQQ</a>, <span class="stringliteral">"chi2_func: relative error is zero, this should not happen\n"</span> );</div>
<div class="line"><a name="l00515"></a><span class="lineno"> 515</span>  <a class="code" href="cddefines_8h.html#a937636e18a3a517d1aeb2c111adb5160">cdEXIT</a>(<a class="code" href="cddefines_8h.html#a73efe787c131b385070f25d18b7c9aa4">EXIT_FAILURE</a>);</div>
<div class="line"><a name="l00516"></a><span class="lineno"> 516</span>  }</div>
<div class="line"><a name="l00517"></a><span class="lineno"> 517</span>  <span class="keywordflow">return</span> chi2_func_v;</div>
<div class="line"><a name="l00518"></a><span class="lineno"> 518</span> }</div>
<div class="ttc" id="structt__optimize_html_aa7ee30e0d3bc99dba6e39d6dafac78af"><div class="ttname"><a href="structt__optimize.html#aa7ee30e0d3bc99dba6e39d6dafac78af">t_optimize::optint</a></div><div class="ttdeci">realnum optint</div><div class="ttdef"><b>Definition:</b> <a href="optimize_8h_source.html#l00249">optimize.h:249</a></div></div>
<div class="ttc" id="structt__radius_html_af333bba77be0c400d735bf3fb0ce5f52"><div class="ttname"><a href="structt__radius.html#af333bba77be0c400d735bf3fb0ce5f52">t_radius::Radius</a></div><div class="ttdeci">double Radius</div><div class="ttdef"><b>Definition:</b> <a href="radius_8h_source.html#l00022">radius.h:22</a></div></div>
<div class="ttc" id="prt_8cpp_html_a00df8d844a4afc984dfbd0fff696acb3"><div class="ttname"><a href="prt_8cpp.html#a00df8d844a4afc984dfbd0fff696acb3">prt_wl</a></div><div class="ttdeci">void prt_wl(FILE *ioOUT, realnum wl)</div><div class="ttdef"><b>Definition:</b> <a href="prt_8cpp_source.html#l00013">prt.cpp:13</a></div></div>
<div class="ttc" id="structt__optimize_html_a1fbd0f95091419455715057b4d6f375a"><div class="ttname"><a href="structt__optimize.html#a1fbd0f95091419455715057b4d6f375a">t_optimize::varmax</a></div><div class="ttdeci">realnum varmax[LIMPAR]</div><div class="ttdef"><b>Definition:</b> <a href="optimize_8h_source.html#l00183">optimize.h:183</a></div></div>
<div class="ttc" id="init_8h_html"><div class="ttname"><a href="init_8h.html">init.h</a></div></div>
<div class="ttc" id="input_8h_html"><div class="ttname"><a href="input_8h.html">input.h</a></div></div>
<div class="ttc" id="input_8cpp_html_a79ef9860d57798efe65aeb1e7ff8ea01"><div class="ttname"><a href="input_8cpp.html#a79ef9860d57798efe65aeb1e7ff8ea01">input</a></div><div class="ttdeci">t_input input</div><div class="ttdef"><b>Definition:</b> <a href="input_8cpp_source.html#l00012">input.cpp:12</a></div></div>
<div class="ttc" id="structt__grid_html_a34ce941222843fd76524e95568d4c0cd"><div class="ttname"><a href="structt__grid.html#a34ce941222843fd76524e95568d4c0cd">t_grid::lgGrid</a></div><div class="ttdeci">bool lgGrid</div><div class="ttdef"><b>Definition:</b> <a href="grid_8h_source.html#l00040">grid.h:40</a></div></div>
<div class="ttc" id="optimize__func_8cpp_html_a7630974ee828b586108aed1f8499337b"><div class="ttname"><a href="optimize__func_8cpp.html#a7630974ee828b586108aed1f8499337b">chi2_func</a></div><div class="ttdeci">STATIC double chi2_func(double, double, double)</div><div class="ttdef"><b>Definition:</b> <a href="optimize__func_8cpp_source.html#l00470">optimize_func.cpp:470</a></div></div>
<div class="ttc" id="structt__optimize_html_a32a34975b48cf110cd0405eef6bb6ce4"><div class="ttname"><a href="structt__optimize.html#a32a34975b48cf110cd0405eef6bb6ce4">t_optimize::ColDen_Obs</a></div><div class="ttdeci">vector< realnum > ColDen_Obs</div><div class="ttdef"><b>Definition:</b> <a href="optimize_8h_source.html#l00210">optimize.h:210</a></div></div>
<div class="ttc" id="cloudy_8cpp_html_a78cb7dc534b1a215439fcba0dbbc1ce2"><div class="ttname"><a href="cloudy_8cpp.html#a78cb7dc534b1a215439fcba0dbbc1ce2">cloudy</a></div><div class="ttdeci">bool cloudy()</div><div class="ttdef"><b>Definition:</b> <a href="cloudy_8cpp_source.html#l00038">cloudy.cpp:38</a></div></div>
<div class="ttc" id="structt__optimize_html_aeb3b28d6646039bf4960d15ce4774e24"><div class="ttname"><a href="structt__optimize.html#aeb3b28d6646039bf4960d15ce4774e24">t_optimize::nvfpnt</a></div><div class="ttdeci">long int nvfpnt[LIMPAR]</div><div class="ttdef"><b>Definition:</b> <a href="optimize_8h_source.html#l00194">optimize.h:194</a></div></div>
<div class="ttc" id="structt__optimize_html_ace0e89de3bc67019a297c99632603423"><div class="ttname"><a href="structt__optimize.html#ace0e89de3bc67019a297c99632603423">t_optimize::xLineInt_error</a></div><div class="ttdeci">vector< realnum > xLineInt_error</div><div class="ttdef"><b>Definition:</b> <a href="optimize_8h_source.html#l00222">optimize.h:222</a></div></div>
<div class="ttc" id="cpu_8h_html_af1d998d79044c9644b48f8d5647d57b6"><div class="ttname"><a href="cpu_8h.html#af1d998d79044c9644b48f8d5647d57b6">SMALLFLOAT</a></div><div class="ttdeci">const realnum SMALLFLOAT</div><div class="ttdef"><b>Definition:</b> <a href="cpu_8h_source.html#l00178">cpu.h:178</a></div></div>
<div class="ttc" id="physconst_8h_html_ab314a6d31265b17ea7833f0bbb5d5951"><div class="ttname"><a href="physconst_8h.html#ab314a6d31265b17ea7833f0bbb5d5951">AS1RAD</a></div><div class="ttdeci">const double AS1RAD</div><div class="ttdef"><b>Definition:</b> <a href="physconst_8h_source.html#l00129">physconst.h:129</a></div></div>
<div class="ttc" id="structt__optimize_html_a5668b5351f09dba5defb23a154eaf31b"><div class="ttname"><a href="structt__optimize.html#a5668b5351f09dba5defb23a154eaf31b">t_optimize::ContNFnu</a></div><div class="ttdeci">vector< Flux > ContNFnu</div><div class="ttdef"><b>Definition:</b> <a href="optimize_8h_source.html#l00240">optimize.h:240</a></div></div>
<div class="ttc" id="monitor__results_8cpp_html_a7629028bdcaca41fec58cbd3baa8147a"><div class="ttname"><a href="monitor__results_8cpp.html#a7629028bdcaca41fec58cbd3baa8147a">wavelength</a></div><div class="ttdeci">static realnum * wavelength</div><div class="ttdef"><b>Definition:</b> <a href="monitor__results_8cpp_source.html#l00070">monitor_results.cpp:70</a></div></div>
<div class="ttc" id="structt__optimize_html_aabb92adc1c3fe5167cf2cf9a7c6b3a2b"><div class="ttname"><a href="structt__optimize.html#aabb92adc1c3fe5167cf2cf9a7c6b3a2b">t_optimize::optDiam</a></div><div class="ttdeci">chi2_type optDiam</div><div class="ttdef"><b>Definition:</b> <a href="optimize_8h_source.html#l00234">optimize.h:234</a></div></div>
<div class="ttc" id="cddrive_8cpp_html_abba377f1299e86c11e62bb58d9dac921"><div class="ttname"><a href="cddrive_8cpp.html#abba377f1299e86c11e62bb58d9dac921">cdWarnings</a></div><div class="ttdeci">void cdWarnings(FILE *ioPNT)</div><div class="ttdef"><b>Definition:</b> <a href="cddrive_8cpp_source.html#l00198">cddrive.cpp:198</a></div></div>
<div class="ttc" id="optimize_8h_html_aca3e55fbbb82e671d1786aed89b6c782"><div class="ttname"><a href="optimize_8h.html#aca3e55fbbb82e671d1786aed89b6c782">optimize_func</a></div><div class="ttdeci">chi2_type optimize_func(const realnum param[], int grid_index=-1)</div><div class="ttdef"><b>Definition:</b> <a href="optimize__func_8cpp_source.html#l00020">optimize_func.cpp:20</a></div></div>
<div class="ttc" id="structt__optimize_html_a392f241ceb4d737760f27c75d30de897"><div class="ttname"><a href="structt__optimize.html#a392f241ceb4d737760f27c75d30de897">t_optimize::nOptimiz</a></div><div class="ttdeci">long int nOptimiz</div><div class="ttdef"><b>Definition:</b> <a href="optimize_8h_source.html#l00246">optimize.h:246</a></div></div>
<div class="ttc" id="structt__radius_html_add9394be9b6a7419684b1c8da1a1d092"><div class="ttname"><a href="structt__radius.html#add9394be9b6a7419684b1c8da1a1d092">t_radius::distance</a></div><div class="ttdeci">double distance</div><div class="ttdef"><b>Definition:</b> <a href="radius_8h_source.html#l00065">radius.h:65</a></div></div>
<div class="ttc" id="structt__optimize_html_a90dccece22770aea48900ccaea4449a6"><div class="ttname"><a href="structt__optimize.html#a90dccece22770aea48900ccaea4449a6">t_optimize::optDiamErr</a></div><div class="ttdeci">chi2_type optDiamErr</div><div class="ttdef"><b>Definition:</b> <a href="optimize_8h_source.html#l00235">optimize.h:235</a></div></div>
<div class="ttc" id="structt__optimize_html_aea1f04b029ebc3bc1d4743dae1665378"><div class="ttname"><a href="structt__optimize.html#aea1f04b029ebc3bc1d4743dae1665378">t_optimize::varang</a></div><div class="ttdeci">realnum varang[LIMPAR][2]</div><div class="ttdef"><b>Definition:</b> <a href="optimize_8h_source.html#l00197">optimize.h:197</a></div></div>
<div class="ttc" id="lines_8cpp_html_ad7cad3c382675e5fe4f38ba797d9de56"><div class="ttname"><a href="lines_8cpp.html#ad7cad3c382675e5fe4f38ba797d9de56">LineSave</a></div><div class="ttdeci">t_LineSave LineSave</div><div class="ttdef"><b>Definition:</b> <a href="lines_8cpp_source.html#l00005">lines.cpp:5</a></div></div>
<div class="ttc" id="optimize_8h_html_a80ac847a91c9a7dce079921a5e42e16b"><div class="ttname"><a href="optimize_8h.html#a80ac847a91c9a7dce079921a5e42e16b">BIG_CHI2</a></div><div class="ttdeci">const chi2_type BIG_CHI2</div><div class="ttdef"><b>Definition:</b> <a href="optimize_8h_source.html#l00051">optimize.h:51</a></div></div>
<div class="ttc" id="structt__optimize_html_ab291ec9e542f5295e486d2fb5af8dae5"><div class="ttname"><a href="structt__optimize.html#ab291ec9e542f5295e486d2fb5af8dae5">t_optimize::chLineLabel</a></div><div class="ttdeci">vector< string > chLineLabel</div><div class="ttdef"><b>Definition:</b> <a href="optimize_8h_source.html#l00215">optimize.h:215</a></div></div>
<div class="ttc" id="cddrive_8cpp_html_ae2794d96dece12d12059f055d9bc58b7"><div class="ttname"><a href="cddrive_8cpp.html#ae2794d96dece12d12059f055d9bc58b7">cdTemp</a></div><div class="ttdeci">int cdTemp(const char *chLabel, long int IonStage, double *TeMean, const char *chWeight)</div><div class="ttdef"><b>Definition:</b> <a href="cddrive_8cpp_source.html#l01602">cddrive.cpp:1602</a></div></div>
<div class="ttc" id="structt__tag___line_sv_html_abd466d899c03e5a9d71032c2e9826591"><div class="ttname"><a href="structt__tag___line_sv.html#abd466d899c03e5a9d71032c2e9826591">t_tag_LineSv::wavelength</a></div><div class="ttdeci">realnum wavelength</div><div class="ttdef"><b>Definition:</b> <a href="lines_8h_source.html#l00131">lines.h:131</a></div></div>
<div class="ttc" id="optimize_8h_html_ad6dd8ba12350273831a533098cdd4b77"><div class="ttname"><a href="optimize_8h.html#ad6dd8ba12350273831a533098cdd4b77">vary_input</a></div><div class="ttdeci">void vary_input(bool *lgLimOK, int grid_index)</div><div class="ttdef"><b>Definition:</b> <a href="vary__input_8cpp_source.html#l00011">vary_input.cpp:11</a></div></div>
<div class="ttc" id="structt__optimize_html_aad77d2eede243752d675904e31677f2b"><div class="ttname"><a href="structt__optimize.html#aad77d2eede243752d675904e31677f2b">t_optimize::chVarFmt</a></div><div class="ttdeci">char chVarFmt[LIMPAR][FILENAME_PATH_LENGTH_2]</div><div class="ttdef"><b>Definition:</b> <a href="optimize_8h_source.html#l00263">optimize.h:263</a></div></div>
<div class="ttc" id="cddefines_8cpp_html_a94bc49f6569c17375ac7fbf6a66f6dd0"><div class="ttname"><a href="cddefines_8cpp.html#a94bc49f6569c17375ac7fbf6a66f6dd0">ioQQQ</a></div><div class="ttdeci">FILE * ioQQQ</div><div class="ttdef"><b>Definition:</b> <a href="cddefines_8cpp_source.html#l00007">cddefines.cpp:7</a></div></div>
<div class="ttc" id="structt__optimize_html_a61fab5b0f2116787dde71f83a323e98f"><div class="ttname"><a href="structt__optimize.html#a61fab5b0f2116787dde71f83a323e98f">t_optimize::vparm</a></div><div class="ttdeci">realnum vparm[LIMEXT][LIMPAR]</div><div class="ttdef"><b>Definition:</b> <a href="optimize_8h_source.html#l00188">optimize.h:188</a></div></div>
<div class="ttc" id="radius_8h_html"><div class="ttname"><a href="radius_8h.html">radius.h</a></div></div>
<div class="ttc" id="structt__called_html_a637dca49e1651bde0439e7da1e74d155"><div class="ttname"><a href="structt__called.html#a637dca49e1651bde0439e7da1e74d155">t_called::lgTalk</a></div><div class="ttdeci">bool lgTalk</div><div class="ttdef"><b>Definition:</b> <a href="called_8h_source.html#l00012">called.h:12</a></div></div>
<div class="ttc" id="init_8h_html_a06ed5713dc14dbeb741b1fec3c81afe8"><div class="ttname"><a href="init_8h.html#a06ed5713dc14dbeb741b1fec3c81afe8">zero</a></div><div class="ttdeci">void zero(void)</div><div class="ttdef"><b>Definition:</b> <a href="zero_8cpp_source.html#l00073">zero.cpp:73</a></div></div>
<div class="ttc" id="structt__optimize_html_aef03434f73e64472057dff4530860822"><div class="ttname"><a href="structt__optimize.html#aef03434f73e64472057dff4530860822">t_optimize::SavGenericData</a></div><div class="ttdeci">double SavGenericData[10]</div><div class="ttdef"><b>Definition:</b> <a href="optimize_8h_source.html#l00266">optimize.h:266</a></div></div>
<div class="ttc" id="cddefines_8h_html_a7c3611a138396e34ed974cd065a12943"><div class="ttname"><a href="cddefines_8h.html#a7c3611a138396e34ed974cd065a12943">cap4</a></div><div class="ttdeci">void cap4(char *chCAP, const char *chLab)</div><div class="ttdef"><b>Definition:</b> <a href="service_8cpp_source.html#l00240">service.cpp:240</a></div></div>
<div class="ttc" id="class_flux_html"><div class="ttname"><a href="class_flux.html">Flux</a></div><div class="ttdef"><b>Definition:</b> <a href="flux_8h_source.html#l00009">flux.h:9</a></div></div>
<div class="ttc" id="predcont_8h_html"><div class="ttname"><a href="predcont_8h.html">predcont.h</a></div></div>
<div class="ttc" id="structt__tag___line_sv_html_a6abe0103bf53c20ccb5805b0af190a24"><div class="ttname"><a href="structt__tag___line_sv.html#a6abe0103bf53c20ccb5805b0af190a24">t_tag_LineSv::SumLine</a></div><div class="ttdeci">double SumLine[4]</div><div class="ttdef"><b>Definition:</b> <a href="lines_8h_source.html#l00125">lines.h:125</a></div></div>
<div class="ttc" id="class_singleton_html_a3c8c8b154dbf1701b773eb6a49d72f71"><div class="ttname"><a href="class_singleton.html#a3c8c8b154dbf1701b773eb6a49d72f71">Singleton::Inst</a></div><div class="ttdeci">static T & Inst()</div><div class="ttdef"><b>Definition:</b> <a href="cddefines_8h_source.html#l00179">cddefines.h:179</a></div></div>
<div class="ttc" id="structt__optimize_html_a61f0e654fe0129db127e8f93fbf923f3"><div class="ttname"><a href="structt__optimize.html#a61f0e654fe0129db127e8f93fbf923f3">t_optimize::temp_error</a></div><div class="ttdeci">vector< realnum > temp_error</div><div class="ttdef"><b>Definition:</b> <a href="optimize_8h_source.html#l00228">optimize.h:228</a></div></div>
<div class="ttc" id="called_8h_html"><div class="ttname"><a href="called_8h.html">called.h</a></div></div>
<div class="ttc" id="cdinit_8cpp_html_ae3959fad824c48b8fa4f06a0fb8867f4"><div class="ttname"><a href="cdinit_8cpp.html#ae3959fad824c48b8fa4f06a0fb8867f4">LineSv</a></div><div class="ttdeci">LinSv * LineSv</div><div class="ttdef"><b>Definition:</b> <a href="cdinit_8cpp_source.html#l00070">cdinit.cpp:70</a></div></div>
<div class="ttc" id="cddefines_8h_html_a10b2d890d871e1489bb02b7e70d9bdfb"><div class="ttname"><a href="cddefines_8h.html#a10b2d890d871e1489bb02b7e70d9bdfb">STATIC</a></div><div class="ttdeci">#define STATIC</div><div class="ttdef"><b>Definition:</b> <a href="cddefines_8h_source.html#l00101">cddefines.h:101</a></div></div>
<div class="ttc" id="optimize_8h_html"><div class="ttname"><a href="optimize_8h.html">optimize.h</a></div></div>
<div class="ttc" id="rfield_8cpp_html_ae577590833d90679b27a7e2b237ee667"><div class="ttname"><a href="rfield_8cpp.html#ae577590833d90679b27a7e2b237ee667">rfield</a></div><div class="ttdeci">t_rfield rfield</div><div class="ttdef"><b>Definition:</b> <a href="rfield_8cpp_source.html#l00008">rfield.cpp:8</a></div></div>
<div class="ttc" id="structt__optimize_html_ad5cc60b6859dd3f37877aa3d6daa19f6"><div class="ttname"><a href="structt__optimize.html#ad5cc60b6859dd3f37877aa3d6daa19f6">t_optimize::ColDen_error</a></div><div class="ttdeci">vector< realnum > ColDen_error</div><div class="ttdef"><b>Definition:</b> <a href="optimize_8h_source.html#l00211">optimize.h:211</a></div></div>
<div class="ttc" id="cddefines_8h_html_a9aeda5ccf905f7d5241c0fe35434c820"><div class="ttname"><a href="cddefines_8h.html#a9aeda5ccf905f7d5241c0fe35434c820">realnum</a></div><div class="ttdeci">float realnum</div><div class="ttdef"><b>Definition:</b> <a href="cddefines_8h_source.html#l00107">cddefines.h:107</a></div></div>
<div class="ttc" id="cddefines_8h_html_a73efe787c131b385070f25d18b7c9aa4"><div class="ttname"><a href="cddefines_8h.html#a73efe787c131b385070f25d18b7c9aa4">EXIT_FAILURE</a></div><div class="ttdeci">#define EXIT_FAILURE</div><div class="ttdef"><b>Definition:</b> <a href="cddefines_8h_source.html#l00144">cddefines.h:144</a></div></div>
<div class="ttc" id="cddefines_8h_html_abeecded55c36d9bbddf7109747eacf8e"><div class="ttname"><a href="cddefines_8h.html#abeecded55c36d9bbddf7109747eacf8e">max</a></div><div class="ttdeci">long max(int a, long b)</div><div class="ttdef"><b>Definition:</b> <a href="cddefines_8h_source.html#l00779">cddefines.h:779</a></div></div>
<div class="ttc" id="structt__optimize_html_a23b45c4139b13836457f37be9b81ded2"><div class="ttname"><a href="structt__optimize.html#a23b45c4139b13836457f37be9b81ded2">t_optimize::xLineInt_Obs</a></div><div class="ttdeci">vector< realnum > xLineInt_Obs</div><div class="ttdef"><b>Definition:</b> <a href="optimize_8h_source.html#l00221">optimize.h:221</a></div></div>
<div class="ttc" id="cddefines_8h_html_a937636e18a3a517d1aeb2c111adb5160"><div class="ttname"><a href="cddefines_8h.html#a937636e18a3a517d1aeb2c111adb5160">cdEXIT</a></div><div class="ttdeci">#define cdEXIT(FAIL)</div><div class="ttdef"><b>Definition:</b> <a href="cddefines_8h_source.html#l00438">cddefines.h:438</a></div></div>
<div class="ttc" id="structt__optimize_html_a0bb1bafd6acfcf01c7846119118411d0"><div class="ttname"><a href="structt__optimize.html#a0bb1bafd6acfcf01c7846119118411d0">t_optimize::nOptLum</a></div><div class="ttdeci">int nOptLum</div><div class="ttdef"><b>Definition:</b> <a href="optimize_8h_source.html#l00256">optimize.h:256</a></div></div>
<div class="ttc" id="structt__optimize_html_ad4405cde8407e5d9120671a7d573aa8e"><div class="ttname"><a href="structt__optimize.html#ad4405cde8407e5d9120671a7d573aa8e">t_optimize::chTempLab</a></div><div class="ttdeci">vector< string > chTempLab</div><div class="ttdef"><b>Definition:</b> <a href="optimize_8h_source.html#l00225">optimize.h:225</a></div></div>
<div class="ttc" id="cddefines_8h_html_ae6ecbd79f3ed104df8afd4c7e53a1c06"><div class="ttname"><a href="cddefines_8h.html#ae6ecbd79f3ed104df8afd4c7e53a1c06">min</a></div><div class="ttdeci">long min(int a, long b)</div><div class="ttdef"><b>Definition:</b> <a href="cddefines_8h_source.html#l00727">cddefines.h:727</a></div></div>
<div class="ttc" id="structt__rfield_html_afa5ca1424cfa35f5a933aacfd69dd4de"><div class="ttname"><a href="structt__rfield.html#afa5ca1424cfa35f5a933aacfd69dd4de">t_rfield::rstrom</a></div><div class="ttdeci">realnum rstrom</div><div class="ttdef"><b>Definition:</b> <a href="rfield_8h_source.html#l00372">rfield.h:372</a></div></div>
<div class="ttc" id="structt__tag___line_sv_html_ab364df22d4ee03d053d35eef3f73573c"><div class="ttname"><a href="structt__tag___line_sv.html#ab364df22d4ee03d053d35eef3f73573c">t_tag_LineSv::chALab</a></div><div class="ttdeci">char chALab[5]</div><div class="ttdef"><b>Definition:</b> <a href="lines_8h_source.html#l00117">lines.h:117</a></div></div>
<div class="ttc" id="optimize_8cpp_html_ad9c1c492528e865ade1aeae90a429054"><div class="ttname"><a href="optimize_8cpp.html#ad9c1c492528e865ade1aeae90a429054">optimize</a></div><div class="ttdeci">t_optimize optimize</div><div class="ttdef"><b>Definition:</b> <a href="optimize_8cpp_source.html#l00005">optimize.cpp:5</a></div></div>
<div class="ttc" id="grid_8cpp_html_ac406de68bde71a8f6eb5674abb0529b9"><div class="ttname"><a href="grid_8cpp.html#ac406de68bde71a8f6eb5674abb0529b9">grid</a></div><div class="ttdeci">t_grid grid</div><div class="ttdef"><b>Definition:</b> <a href="grid_8cpp_source.html#l00005">grid.cpp:5</a></div></div>
<div class="ttc" id="structt__optimize_html_a899a957dfba149cde9df64984082c152"><div class="ttname"><a href="structt__optimize.html#a899a957dfba149cde9df64984082c152">t_optimize::nEmergent</a></div><div class="ttdeci">vector< int > nEmergent</div><div class="ttdef"><b>Definition:</b> <a href="optimize_8h_source.html#l00214">optimize.h:214</a></div></div>
<div class="ttc" id="radius_8cpp_html_ad57f06f64461f4325506113ba07f29fa"><div class="ttname"><a href="radius_8cpp.html#ad57f06f64461f4325506113ba07f29fa">radius</a></div><div class="ttdeci">t_radius radius</div><div class="ttdef"><b>Definition:</b> <a href="radius_8cpp_source.html#l00005">radius.cpp:5</a></div></div>
<div class="ttc" id="structt__optimize_html_aac62945c6097e9dcc1c781fe803a1522"><div class="ttname"><a href="structt__optimize.html#aac62945c6097e9dcc1c781fe803a1522">t_optimize::optier</a></div><div class="ttdeci">realnum optier</div><div class="ttdef"><b>Definition:</b> <a href="optimize_8h_source.html#l00250">optimize.h:250</a></div></div>
<div class="ttc" id="structt__optimize_html_aec467a2d5f17d8bd50129b1a5f61aa51"><div class="ttname"><a href="structt__optimize.html#aec467a2d5f17d8bd50129b1a5f61aa51">t_optimize::wavelength</a></div><div class="ttdeci">vector< realnum > wavelength</div><div class="ttdef"><b>Definition:</b> <a href="optimize_8h_source.html#l00217">optimize.h:217</a></div></div>
<div class="ttc" id="structt__radius_html_ab07967bc61c131cffd182759c9ae80ee"><div class="ttname"><a href="structt__radius.html#ab07967bc61c131cffd182759c9ae80ee">t_radius::Conv2PrtInten</a></div><div class="ttdeci">double Conv2PrtInten</div><div class="ttdef"><b>Definition:</b> <a href="radius_8h_source.html#l00147">radius.h:147</a></div></div>
<div class="ttc" id="structt__optimize_html_aa195ca512625c1a5d4a244ba64ab3054"><div class="ttname"><a href="structt__optimize.html#aa195ca512625c1a5d4a244ba64ab3054">t_optimize::chOptRtn</a></div><div class="ttdeci">char chOptRtn[5]</div><div class="ttdef"><b>Definition:</b> <a href="optimize_8h_source.html#l00264">optimize.h:264</a></div></div>
<div class="ttc" id="cddefines_8h_html_a092bd7bb2cb7fd9f483b6995cee61bc0"><div class="ttname"><a href="cddefines_8h.html#a092bd7bb2cb7fd9f483b6995cee61bc0">ASSERT</a></div><div class="ttdeci">#define ASSERT(exp)</div><div class="ttdef"><b>Definition:</b> <a href="cddefines_8h_source.html#l00582">cddefines.h:582</a></div></div>
<div class="ttc" id="grid_8h_html"><div class="ttname"><a href="grid_8h.html">grid.h</a></div></div>
<div class="ttc" id="optimize_8h_html_a5846ad020ddaf38b0a183086a05196bf"><div class="ttname"><a href="optimize_8h.html#a5846ad020ddaf38b0a183086a05196bf">chi2_type</a></div><div class="ttdeci">double chi2_type</div><div class="ttdef"><b>Definition:</b> <a href="optimize_8h_source.html#l00049">optimize.h:49</a></div></div>
<div class="ttc" id="structt__optimize_html_a5f794f6e77fbfa9ed87e3ce6696d2b47"><div class="ttname"><a href="structt__optimize.html#a5f794f6e77fbfa9ed87e3ce6696d2b47">t_optimize::ContIndex</a></div><div class="ttdeci">vector< long > ContIndex</div><div class="ttdef"><b>Definition:</b> <a href="optimize_8h_source.html#l00238">optimize.h:238</a></div></div>
<div class="ttc" id="cddrive_8cpp_html_acfa09d7dfc6168a0bd0834dcbcf4e4e3"><div class="ttname"><a href="cddrive_8cpp.html#acfa09d7dfc6168a0bd0834dcbcf4e4e3">cdLine</a></div><div class="ttdeci">long int cdLine(const char *chLabel, realnum wavelength, double *relint, double *absint)</div><div class="ttdef"><b>Definition:</b> <a href="cddrive_8cpp_source.html#l01228">cddrive.cpp:1228</a></div></div>
<div class="ttc" id="structt___line_save_html_aa7d9b89d8fb659d4ad5309f7982f18d7"><div class="ttname"><a href="structt___line_save.html#aa7d9b89d8fb659d4ad5309f7982f18d7">t_LineSave::ipNormWavL</a></div><div class="ttdeci">long int ipNormWavL</div><div class="ttdef"><b>Definition:</b> <a href="lines_8h_source.html#l00081">lines.h:81</a></div></div>
<div class="ttc" id="cddefines_8h_html"><div class="ttname"><a href="cddefines_8h.html">cddefines.h</a></div></div>
<div class="ttc" id="structt__optimize_html_ab81140e20c08913108dacf4ef590996a"><div class="ttname"><a href="structt__optimize.html#ab81140e20c08913108dacf4ef590996a">t_optimize::ContNFnuErr</a></div><div class="ttdeci">vector< chi2_type > ContNFnuErr</div><div class="ttdef"><b>Definition:</b> <a href="optimize_8h_source.html#l00241">optimize.h:241</a></div></div>
<div class="ttc" id="cddefines_8h_html_a34a972cf4be2379a5ee363b82d623b3a"><div class="ttname"><a href="cddefines_8h.html#a34a972cf4be2379a5ee363b82d623b3a">pow2</a></div><div class="ttdeci">T pow2(T a)</div><div class="ttdef"><b>Definition:</b> <a href="cddefines_8h_source.html#l00935">cddefines.h:935</a></div></div>
<div class="ttc" id="cddrive_8cpp_html_a13d62b4a3532cbca21b0e6249a1d0a0c"><div class="ttname"><a href="cddrive_8cpp.html#a13d62b4a3532cbca21b0e6249a1d0a0c">cdColm</a></div><div class="ttdeci">int cdColm(const char *chLabel, long int ion, double *theocl)</div><div class="ttdef"><b>Definition:</b> <a href="cddrive_8cpp_source.html#l00636">cddrive.cpp:636</a></div></div>
<div class="ttc" id="structt__optimize_html_ac57814d75e3b4789a299f0767ab8daad"><div class="ttname"><a href="structt__optimize.html#ac57814d75e3b4789a299f0767ab8daad">t_optimize::lgOptimize</a></div><div class="ttdeci">bool lgOptimize</div><div class="ttdef"><b>Definition:</b> <a href="optimize_8h_source.html#l00253">optimize.h:253</a></div></div>
<div class="ttc" id="cddefines_8h_html_ada0cfa6927ba3683adc971d17643f2e5"><div class="ttname"><a href="cddefines_8h.html#ada0cfa6927ba3683adc971d17643f2e5">DEBUG_ENTRY</a></div><div class="ttdeci">#define DEBUG_ENTRY(funcname)</div><div class="ttdef"><b>Definition:</b> <a href="cddefines_8h_source.html#l00688">cddefines.h:688</a></div></div>
<div class="ttc" id="structt__optimize_html_a8c53ecdbed38e7acad3463c9246658b8"><div class="ttname"><a href="structt__optimize.html#a8c53ecdbed38e7acad3463c9246658b8">t_optimize::ionTemp</a></div><div class="ttdeci">vector< long > ionTemp</div><div class="ttdef"><b>Definition:</b> <a href="optimize_8h_source.html#l00226">optimize.h:226</a></div></div>
<div class="ttc" id="structt__optimize_html_afa3e77def5e195306d47e8ded5f3e227"><div class="ttname"><a href="structt__optimize.html#afa3e77def5e195306d47e8ded5f3e227">t_optimize::ipobs</a></div><div class="ttdeci">vector< long > ipobs</div><div class="ttdef"><b>Definition:</b> <a href="optimize_8h_source.html#l00220">optimize.h:220</a></div></div>
<div class="ttc" id="structt__optimize_html_aa81e6b305b6f40fc1de77d7e1cda69ab"><div class="ttname"><a href="structt__optimize.html#aa81e6b305b6f40fc1de77d7e1cda69ab">t_optimize::lgDiamInCM</a></div><div class="ttdeci">bool lgDiamInCM</div><div class="ttdef"><b>Definition:</b> <a href="optimize_8h_source.html#l00233">optimize.h:233</a></div></div>
<div class="ttc" id="structt__optimize_html_ae2b5ffcbd11ec4e496426f8c03888ebb"><div class="ttname"><a href="structt__optimize.html#ae2b5ffcbd11ec4e496426f8c03888ebb">t_optimize::ContEner</a></div><div class="ttdeci">vector< Energy > ContEner</div><div class="ttdef"><b>Definition:</b> <a href="optimize_8h_source.html#l00239">optimize.h:239</a></div></div>
<div class="ttc" id="structt__optimize_html_a8c42b89eb12c7f201aa9ac12d8331613"><div class="ttname"><a href="structt__optimize.html#a8c42b89eb12c7f201aa9ac12d8331613">t_optimize::temp_obs</a></div><div class="ttdeci">vector< realnum > temp_obs</div><div class="ttdef"><b>Definition:</b> <a href="optimize_8h_source.html#l00227">optimize.h:227</a></div></div>
<div class="ttc" id="structt__optimize_html_a1d435167a437a0a6327d9e002b24881c"><div class="ttname"><a href="structt__optimize.html#a1d435167a437a0a6327d9e002b24881c">t_optimize::chColDen_label</a></div><div class="ttdeci">vector< string > chColDen_label</div><div class="ttdef"><b>Definition:</b> <a href="optimize_8h_source.html#l00208">optimize.h:208</a></div></div>
<div class="ttc" id="structt__optimize_html_a33c8400b89b41c753ce60b262440525f"><div class="ttname"><a href="structt__optimize.html#a33c8400b89b41c753ce60b262440525f">t_optimize::lgOptDiam</a></div><div class="ttdeci">bool lgOptDiam</div><div class="ttdef"><b>Definition:</b> <a href="optimize_8h_source.html#l00232">optimize.h:232</a></div></div>
<div class="ttc" id="structt__optimize_html_a307cb548866e5040574e935d2d978708"><div class="ttname"><a href="structt__optimize.html#a307cb548866e5040574e935d2d978708">t_optimize::varmin</a></div><div class="ttdeci">realnum varmin[LIMPAR]</div><div class="ttdef"><b>Definition:</b> <a href="optimize_8h_source.html#l00184">optimize.h:184</a></div></div>
<div class="ttc" id="cddrive_8h_html"><div class="ttname"><a href="cddrive_8h.html">cddrive.h</a></div></div>
<div class="ttc" id="structt__optimize_html_a28391e155d2eb95eb6358d4ceba2705a"><div class="ttname"><a href="structt__optimize.html#a28391e155d2eb95eb6358d4ceba2705a">t_optimize::lgOptLum</a></div><div class="ttdeci">bool lgOptLum</div><div class="ttdef"><b>Definition:</b> <a href="optimize_8h_source.html#l00255">optimize.h:255</a></div></div>
<div class="ttc" id="structt__input_html_ae1282ce92a528597572b8ad0f8216382"><div class="ttname"><a href="structt__input.html#ae1282ce92a528597572b8ad0f8216382">t_input::chCardSav</a></div><div class="ttdeci">char chCardSav[NKRD][INPUT_LINE_LENGTH]</div><div class="ttdef"><b>Definition:</b> <a href="input_8h_source.html#l00032">input.h:32</a></div></div>
<div class="ttc" id="structt__optimize_html_aec4e99500fb7847044346f7e27534943"><div class="ttname"><a href="structt__optimize.html#aec4e99500fb7847044346f7e27534943">t_optimize::chTempWeight</a></div><div class="ttdeci">vector< string > chTempWeight</div><div class="ttdef"><b>Definition:</b> <a href="optimize_8h_source.html#l00229">optimize.h:229</a></div></div>
<div class="ttc" id="rfield_8h_html"><div class="ttname"><a href="rfield_8h.html">rfield.h</a></div></div>
<div class="ttc" id="prt_8h_html"><div class="ttname"><a href="prt_8h.html">prt.h</a></div></div>
<div class="ttc" id="structt__rfield_html_a1ef47acedddeaa42a3747f1353549005"><div class="ttname"><a href="structt__rfield.html#a1ef47acedddeaa42a3747f1353549005">t_rfield::lgUSphON</a></div><div class="ttdeci">bool lgUSphON</div><div class="ttdef"><b>Definition:</b> <a href="rfield_8h_source.html#l00370">rfield.h:370</a></div></div>
<div class="ttc" id="structt__optimize_html_a95aa7de0bd5cd5d7a1b802831f77e08c"><div class="ttname"><a href="structt__optimize.html#a95aa7de0bd5cd5d7a1b802831f77e08c">t_optimize::lgOptimFlow</a></div><div class="ttdeci">bool lgOptimFlow</div><div class="ttdef"><b>Definition:</b> <a href="optimize_8h_source.html#l00248">optimize.h:248</a></div></div>
<div class="ttc" id="structt__optimize_html_afae4f78485c0d91265efe752e58ce0ab"><div class="ttname"><a href="structt__optimize.html#afae4f78485c0d91265efe752e58ce0ab">t_optimize::ion_ColDen</a></div><div class="ttdeci">vector< long > ion_ColDen</div><div class="ttdef"><b>Definition:</b> <a href="optimize_8h_source.html#l00209">optimize.h:209</a></div></div>
<div class="ttc" id="structt__optimize_html_a967997b4c7075c5ae851e43cd22be93e"><div class="ttname"><a href="structt__optimize.html#a967997b4c7075c5ae851e43cd22be93e">t_optimize::nvarxt</a></div><div class="ttdeci">long int nvarxt[LIMPAR]</div><div class="ttdef"><b>Definition:</b> <a href="optimize_8h_source.html#l00194">optimize.h:194</a></div></div>
<div class="ttc" id="called_8cpp_html_aee8b9d066c56b63ee5195666abd874f3"><div class="ttname"><a href="called_8cpp.html#aee8b9d066c56b63ee5195666abd874f3">called</a></div><div class="ttdeci">t_called called</div><div class="ttdef"><b>Definition:</b> <a href="called_8cpp_source.html#l00005">called.cpp:5</a></div></div>
<div class="ttc" id="structt__optimize_html_a5be42c3cf9b64d79ddea853de6d5f10f"><div class="ttname"><a href="structt__optimize.html#a5be42c3cf9b64d79ddea853de6d5f10f">t_optimize::nvary</a></div><div class="ttdeci">long int nvary</div><div class="ttdef"><b>Definition:</b> <a href="optimize_8h_source.html#l00200">optimize.h:200</a></div></div>
<div class="ttc" id="cloudy_8h_html"><div class="ttname"><a href="cloudy_8h.html">cloudy.h</a></div></div>
<div class="ttc" id="structt___line_save_html_af233718a78d2f970b01981bfd7d67c20"><div class="ttname"><a href="structt___line_save.html#af233718a78d2f970b01981bfd7d67c20">t_LineSave::ScaleNormLine</a></div><div class="ttdeci">double ScaleNormLine</div><div class="ttdef"><b>Definition:</b> <a href="lines_8h_source.html#l00094">lines.h:94</a></div></div>
<div class="ttc" id="lines_8h_html"><div class="ttname"><a href="lines_8h.html">lines.h</a></div></div>
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