Sophie: itk-2.0.1-1mdk src

itk-2.0.1-1mdk.src.rpm

%define build_java 0
%{?_with_java: %{expand: %%global build_java 1}}

%define build_patented 0
%{?_with_patented: %{expand: %%global build_patented 1}}

%define name	itk
%define version 2.0.1
%define release 1

%define libname %mklibname %{name}
%define libname_devel %mklibname %{name} -d

Summary:	Medicine Insight Segmentation and Registration
Name:		%{name}
Version:	%{version}
Release:	%mkrel %{release}
License:	BSDish
Group:		Sciences/Other
URL:		http://www.itk.org
Source0:	http://belnet.dl.sourceforge.net/sourceforge/itk/InsightToolkit-%{version}.tar.bz2
Source1:	http://belnet.dl.sourceforge.net/sourceforge/itk/ItkSoftwareGuide-2.0.0.pdf.bz2
Patch0:		itk-python-numarray.patch.bz2
Patch1:		itk-wrap-morpho.patch.bz2
BuildRoot:	%{_tmppath}/%{name}-%{version}-%{release}-buildroot
BuildRequires:	cmake >= 1.8.3 XFree86-devel png-devel tiff-devel zlib-devel gcc-c++
BuildRequires:	cableswig python-numarray-devel python-devel tcl gcc3.3-c++
BuildRequires:	graphviz doxygen perl

%description
ITK is an open-source software system to support the Visible Human Project. 
Currently under active development, ITK employs leading-edge segmentation 
and registration algorithms in two, three, and more dimensions.

The Insight Toolkit was developed by six principal organizations, three 
commercial (Kitware, GE Corporate R&D, and Insightful) and three academic 
(UNC Chapel Hill, University of Utah, and University of Pennsylvania). 
Additional team members include Harvard Brigham & Women's Hospital, 
University of Pittsburgh, and Columbia University. The funding for the 
project is from the National Library of Medicine at the National Institutes 
of Health. NLM in turn was supported by member institutions of NIH (see 
sponsors). 

%package -n %{libname}
Group:          System/Libraries
Summary:        Medicine Insight Segmentation and Registration
Provides:	%{name} = %{version}-%{release}
Provides:	InsightToolkit = %{version}-%{release}

%description -n %{libname}
ITK is an open-source software system to support the Visible Human Project.
Currently under active development, ITK employs leading-edge segmentation
and registration algorithms in two, three, and more dimensions.

The Insight Toolkit was developed by six principal organizations, three
commercial (Kitware, GE Corporate R&D, and Insightful) and three academic
(UNC Chapel Hill, University of Utah, and University of Pennsylvania).
Additional team members include Harvard Brigham & Women's Hospital,
University of Pittsburgh, and Columbia University. The funding for the
project is from the National Library of Medicine at the National Institutes
of Health. NLM in turn was supported by member institutions of NIH (see
sponsors).


%package  -n %{libname_devel}
Summary:	ITK header files for building C++ code
Group:		Development/C++
Requires:	gcc-c++ 
Requires:	%{libname} = %{version}
Provides:	%{name}-devel = %{version}-%{release}

%description -n %{libname_devel}
ITK is an open-source software system to support the Visible Human Project. 
Currently under active development, ITK employs leading-edge segmentation 
and registration algorithms in two, three, and more dimensions.

The Insight Toolkit was developed by six principal organizations, three 
commercial (Kitware, GE Corporate R&D, and Insightful) and three academic 
(UNC Chapel Hill, University of Utah, and University of Pennsylvania). 
Additional team members include Harvard Brigham & Women's Hospital, 
University of Pittsburgh, and Columbia University. The funding for the 
project is from the National Library of Medicine at the National Institutes 
of Health. NLM in turn was supported by member institutions of NIH (see 
sponsors). 

%package examples
Summary:	C++, Tcl and Python example programs/scripts for ITK
Group:		Development/C++
Requires:	%{name}-data = %{version}
Requires:       %{libname} = %{version}

%description examples
ITK is an open-source software system to support the Visible Human Project. 
Currently under active development, ITK employs leading-edge segmentation 
and registration algorithms in two, three, and more dimensions.

The Insight Toolkit was developed by six principal organizations, three 
commercial (Kitware, GE Corporate R&D, and Insightful) and three academic 
(UNC Chapel Hill, University of Utah, and University of Pennsylvania). 
Additional team members include Harvard Brigham & Women's Hospital, 
University of Pittsburgh, and Columbia University. The funding for the 
project is from the National Library of Medicine at the National Institutes 
of Health. NLM in turn was supported by member institutions of NIH (see 
sponsors). 

%package data
Summary:	These data are required to run various examples from the examples package
Group:		Development/C++

%description data
ITK is an open-source software system to support the Visible Human Project. 
Currently under active development, ITK employs leading-edge segmentation 
and registration algorithms in two, three, and more dimensions.

The Insight Toolkit was developed by six principal organizations, three 
commercial (Kitware, GE Corporate R&D, and Insightful) and three academic 
(UNC Chapel Hill, University of Utah, and University of Pennsylvania). 
Additional team members include Harvard Brigham & Women's Hospital, 
University of Pittsburgh, and Columbia University. The funding for the 
project is from the National Library of Medicine at the National Institutes 
of Health. NLM in turn was supported by member institutions of NIH (see 
sponsors). 

%package doc
Summary:	Documentation for ITK
Group:		Development/C++

%description doc
ITK is an open-source software system to support the Visible Human Project. 
Currently under active development, ITK employs leading-edge segmentation 
and registration algorithms in two, three, and more dimensions.

The Insight Toolkit was developed by six principal organizations, three 
commercial (Kitware, GE Corporate R&D, and Insightful) and three academic 
(UNC Chapel Hill, University of Utah, and University of Pennsylvania). 
Additional team members include Harvard Brigham & Women's Hospital, 
University of Pittsburgh, and Columbia University. The funding for the 
project is from the National Library of Medicine at the National Institutes 
of Health. NLM in turn was supported by member institutions of NIH (see 
sponsors). 

%package -n python-%{name}
Summary:	Python bindings for ITK
Group:		Development/Python
Requires:	python
Requires:	python-numarray
Requires:	%{name} = %{version}
Obsoletes:	%{name}-pyhon
Provides:	%{name}-pyhon

%description -n python-%{name}
ITK is an open-source software system to support the Visible Human Project. 
Currently under active development, ITK employs leading-edge segmentation 
and registration algorithms in two, three, and more dimensions.

The Insight Toolkit was developed by six principal organizations, three 
commercial (Kitware, GE Corporate R&D, and Insightful) and three academic 
(UNC Chapel Hill, University of Utah, and University of Pennsylvania). 
Additional team members include Harvard Brigham & Women's Hospital, 
University of Pittsburgh, and Columbia University. The funding for the 
project is from the National Library of Medicine at the National Institutes 
of Health. NLM in turn was supported by member institutions of NIH (see 
sponsors). 

%if %build_java
%package -n java-%{name}
Summary: Java bindings for ITK
Group: Development/Java
Requires: %{name} = %{version}
Obsoletes:      %{name}-java
Provides:       %{name}-java

%description -n java-%{name}
ITK is an open-source software system to support the Visible Human Project. 
Currently under active development, ITK employs leading-edge segmentation 
and registration algorithms in two, three, and more dimensions.

The Insight Toolkit was developed by six principal organizations, three 
commercial (Kitware, GE Corporate R&D, and Insightful) and three academic 
(UNC Chapel Hill, University of Utah, and University of Pennsylvania). 
Additional team members include Harvard Brigham & Women's Hospital, 
University of Pittsburgh, and Columbia University. The funding for the 
project is from the National Library of Medicine at the National Institutes 
of Health. NLM in turn was supported by member institutions of NIH (see 
sponsors). 
%endif

%package -n tcl-%{name}
Summary: TCL bindings for ITK
Group: Development/Other
Requires:	%{name} = %{version}
Requires:	tcl
Obsoletes:      %{name}-tcl
Provides:       %{name}-tcl

%description -n tcl-%{name}
ITK is an open-source software system to support the Visible Human Project. 
Currently under active development, ITK employs leading-edge segmentation 
and registration algorithms in two, three, and more dimensions.

The Insight Toolkit was developed by six principal organizations, three 
commercial (Kitware, GE Corporate R&D, and Insightful) and three academic 
(UNC Chapel Hill, University of Utah, and University of Pennsylvania). 
Additional team members include Harvard Brigham & Women's Hospital, 
University of Pittsburgh, and Columbia University. The funding for the 
project is from the National Library of Medicine at the National Institutes 
of Health. NLM in turn was supported by member institutions of NIH (see 
sponsors). 

%prep

%setup -q -n InsightToolkit-%{version}
# numarray patch
%patch0 -p1

# morpho patch
%patch1 -p1
cd Wrapping/CSwig/BasicFiltersA
./MakeConsistentWrappedClasses.sh
cd -

# doc
bunzip2 %{SOURCE1} -c > ItkSoftwareGuide.pdf

# remove CVS dirs, if exists
find -name CVS -type d | xargs rm -rf

%build

PYTHON_INCLUDE_PATH=$(python -c"import os,sys; print os.path.join(sys.exec_prefix, 'include', 'python' + sys.version[:3])")
PYTHON_LIBRARY=$(python -c"import os,sys; print os.path.join(sys.exec_prefix, 'lib', 'python' + sys.version[:3], 'config/libpython' + sys.version[:3] + '.a')")

CMAKE_CMD="cmake -DCMAKE_INSTALL_PREFIX:PATH=%{_prefix} \
      -DBUILD_SHARED_LIBS:BOOL=ON \
      -DBUILD_DOXYGEN:BOOL=ON \
      -DCMAKE_CXX_FLAGS:STRING=$RPM_OPT_FLAGS \
      -DCMAKE_C_FLAGS:STRING=$RPM_OPT_FLAGS	\
      -DITK_USE_SYSTEM_TIFF:BOOL=ON \
      -DITK_USE_SYSTEM_PNG:BOOL=ON \
      -DITK_USE_SYSTEM_ZLIB:BOOL=ON \
      -DCMAKE_SKIP_RPATH:BOOL=ON \
      -DITK_CSWIG_PYTHON:BOOL=ON \
      -DITK_USE_PYTHON_NUMARRAY:BOOL=ON \
      -DPYTHON_INCLUDE_PATH:PATH=$PYTHON_INCLUDE_PATH \
      -DPYTHON_LIBRARY:FILEPATH=$PYTHON_LIBRARY \
      -DITK_CSWIG_TCL:BOOL=ON \
"
      
%if %build_java
CMAKE_CMD="$CMAKE_CMD \
	-DJAVA_INCLUDE_PATH:PATH=$JAVA_HOME/include \
	-DJAVA_INCLUDE_PATH2:PATH=$JAVA_HOME/include/linux \
	-DJAVA_AWT_INCLUDE_PATH:PATH=$JAVA_HOME/include \
	-DJAVA_AWT_LIBRARY:PATH=$JAVA_HOME/jre/lib/i386/libawt.so \
	-DVTK_WRAP_JAVA:BOOL=ON \
"
%endif

%if %build_patented
CMAKE_CMD="$CMAKE_CMD \
	-DITK_USE_PATENTED:BOOL=ON \
"
%endif

$CMAKE_CMD .

#      -DITK_USE_SYSTEM_VXL:BOOL=ON \
#      -DBUILD_EXAMPLES:BOOL=ON \


# wrapper still needs gcc 3.3 compatibility
export GCCXML_COMPILER=g++-%(gcc3.3-version)

%make

# test itk
# make test

# build docs
mkdir -p Documentation/Doxygen
doxygen doxygen.config

# compile python modules
export LIBPYTHONPATH=%(python -c"import os,sys; print os.path.join(sys.exec_prefix, 'lib', 'python' + sys.version[:3])")
python $LIBPYTHONPATH/py_compile.py bin/*.py
python $LIBPYTHONPATH/py_compile.py Wrapping/CSwig/Python/*.py
python $LIBPYTHONPATH/py_compile.py Wrapping/CSwig/Python/InstallOnly/itkbase.py

%install
[ "$RPM_BUILD_ROOT" != "/" ] && rm -rf $RPM_BUILD_ROOT

echo "build_java=%{build_java}"

make install DESTDIR=$RPM_BUILD_ROOT

# install ld.so.conf path
install -d -m 755 $RPM_BUILD_ROOT/%{_sysconfdir}/ld.so.conf.d
cat > $RPM_BUILD_ROOT/%{_sysconfdir}/ld.so.conf.d/%{name}.conf <<_EOF
%{_libdir}/InsightToolkit
_EOF

# install docs
install -d -m 755 $RPM_BUILD_ROOT/%{_datadir}/%{name}-doc
cp -a Documentation/Doxygen/html $RPM_BUILD_ROOT/%{_datadir}/%{name}-doc/api

# install examples
install -d -m 755 $RPM_BUILD_ROOT/%{_datadir}/%{name}-examples/
cp -a Testing $RPM_BUILD_ROOT/%{_datadir}/%{name}-examples/
cp -a Examples $RPM_BUILD_ROOT/%{_datadir}/%{name}-examples/
# get rid of unwanted files
find $RPM_BUILD_ROOT/%{_datadir}/itk-examples/ -name "*.o" -exec rm {} \;
find $RPM_BUILD_ROOT/%{_datadir}/itk-examples/ -name CMakeCache.txt -exec rm {} \;
find $RPM_BUILD_ROOT/%{_datadir}/itk-examples/ -name Makefile -exec rm {} \;
find $RPM_BUILD_ROOT/%{_datadir}/itk-examples/ -name DartTestfile.txt -exec rm {} \;
find $RPM_BUILD_ROOT/%{_datadir}/itk-examples/ -name .NoDartCoverage -exec rm {} \;
find $RPM_BUILD_ROOT/%{_datadir}/itk-examples/ -name "cmake.*" -exec rm {} \;

#install data
mv $RPM_BUILD_ROOT/%{_datadir}/itk-examples/Testing/Data $RPM_BUILD_ROOT/%{_datadir}/%{name}-data

# install python
rm -f $RPM_BUILD_ROOT/%{_libdir}/InsightToolkit/*.py
cp bin/*.py $RPM_BUILD_ROOT/%{_libdir}/InsightToolkit/python
cp bin/*.pyc $RPM_BUILD_ROOT/%{_libdir}/InsightToolkit/python
cp Wrapping/CSwig/Python/*.py $RPM_BUILD_ROOT/%{_libdir}/InsightToolkit/python
cp Wrapping/CSwig/Python/*.pyc $RPM_BUILD_ROOT/%{_libdir}/InsightToolkit/python
cp Wrapping/CSwig/Python/InstallOnly/itkbase.py $RPM_BUILD_ROOT/%{_libdir}/InsightToolkit/python
cp Wrapping/CSwig/Python/InstallOnly/itkbase.pyc $RPM_BUILD_ROOT/%{_libdir}/InsightToolkit/python

export ITKPYTHONPATH=%(python -c"import os,sys; print os.path.join(sys.exec_prefix, 'lib', 'python' + sys.version[:3],'site-packages')")
install -d -m 755 $RPM_BUILD_ROOT/$ITKPYTHONPATH
cat > $RPM_BUILD_ROOT/$ITKPYTHONPATH/InsightToolkit.pth <<_EOF
%{_libdir}/InsightToolkit/python
_EOF

#install tcl utils
cp Wrapping/CSwig/Tcl/itkutils.tcl $RPM_BUILD_ROOT/%{_libdir}/InsightToolkit/tcl/
rm -f $RPM_BUILD_ROOT/%{_libdir}/InsightToolkit/itkwish

%clean
rm -rf $RPM_BUILD_ROOT

%post -n %{libname} -p /sbin/ldconfig
%post -n python-%{name} -p /sbin/ldconfig
%post -n tcl-%{name} -p /sbin/ldconfig
%if %build_java
%post -n java-%{name} -p /sbin/ldconfig
%endif

%postun -n %{libname} -p /sbin/ldconfig
%postun -n python-%{name} -p /sbin/ldconfig
%postun -n tcl-%{name} -p /sbin/ldconfig
%if %build_java
%postun -n java-%{name} -p /sbin/ldconfig
%endif


%files -n %{libname}
%defattr(0644,root,root,0755)
%doc README.html 
%doc Documentation/DeveloperList.txt
%doc Copyright/*
%{_libdir}/InsightToolkit/libITKAlgorithms.so
%{_libdir}/InsightToolkit/libITKBasicFilters.so
%{_libdir}/InsightToolkit/libITKCommon.so
%{_libdir}/InsightToolkit/libITKDICOMParser.so
%{_libdir}/InsightToolkit/libITKEXPAT.so
%{_libdir}/InsightToolkit/libITKFEM.so
%{_libdir}/InsightToolkit/libITKIO.so
%{_libdir}/InsightToolkit/libITKMetaIO.so
%{_libdir}/InsightToolkit/libitknetlib.so
%{_libdir}/InsightToolkit/libITKNrrdIO.so
%{_libdir}/InsightToolkit/libITKNumerics.so
%{_libdir}/InsightToolkit/libITKStatistics.so
%{_libdir}/InsightToolkit/libitksys.so
%{_libdir}/InsightToolkit/libitkvcl.so
%{_libdir}/InsightToolkit/libitkvnl_algo.so
%{_libdir}/InsightToolkit/libitkvnl_inst.so
%{_libdir}/InsightToolkit/libitkvnl.so
%{_libdir}/InsightToolkit/libitkjpeg12.so
%{_libdir}/InsightToolkit/libitkjpeg16.so
%{_libdir}/InsightToolkit/libitkjpeg8.so
%{_libdir}/InsightToolkit/libITKSpatialObject.so
%{_libdir}/InsightToolkit/libitkgdcm.so
%{_sysconfdir}/ld.so.conf.d/%{name}.conf


%files -n %{libname_devel}
%defattr(0644,root,root,0755)
%{_includedir}/InsightToolkit
%{_libdir}/InsightToolkit/*.cmake

%files doc
%defattr(0644,root,root,0755)
%doc Documentation/InsightDeveloperStart.pdf
%doc Documentation/Style.pdf
%doc ItkSoftwareGuide.pdf
%{_datadir}/%{name}-doc

%files examples
%defattr(0644,root,root,0755)
%{_datadir}/%{name}-examples/Examples
%{_datadir}/%{name}-examples/Testing

%files data
%defattr(0644,root,root,0755)
%{_datadir}/%{name}-data

%files -n python-%{name}
%defattr(0644,root,root,0755)
%{_libdir}/InsightToolkit/*Python.so
%{_libdir}/InsightToolkit/python
%(python -c"import os,sys; print os.path.join(sys.exec_prefix, 'lib', 'python' + sys.version[:3],'site-packages', 'InsightToolkit.pth')")

%files -n tcl-%{name}
%defattr(0644,root,root,0755)
%attr(755,root,root) %{_bindir}/itkwish
%{_libdir}/InsightToolkit/tcl
%{_libdir}/InsightToolkit/*Tcl.so

%if %build_java
%files -n java-%{name}
%defattr(0644,root,root,0755)
%{_libdir}/InsightToolkit/java
%{_libdir}/InsightToolkit/*Java.so
%endif

%changelog
* Thu Mar 24 2005 Gaetan Lehmann <gaetan.lehmann@jouy.inra.fr> 2.0.1-1mdk
- New release 2.0.1
- Use mkrel
- add "--with patented" switch
- fix wrong tcl group

* Wed Mar 02 2005 Gaetan Lehmann <gaetan.lehmann@jouy.inra.fr> 2.0.0-2mdk
- add morpho filters in wrappers (patch1)
- fix some lint

* Sun Feb 13 2005 Gaetan Lehmann <gaetan.lehmann@jouy.inra.fr> 2.0.0-1mdk
- 2.0.0
- add wrappers

* Mon Jan 31 2005 Gaetan Lehmann <gaetan.lehmann@jouy.inra.fr> 1.10.0-0.cvs20050131.1mdk
- 1.10.0 cvs
- build still fail with wrapper so no wrapper avaible :-(
- add doc and devel packages
- use libitk name
- initial contrib release

* Mon Sep 27 2004 Fabrice Bellet <Fabrice.Bellet@creatis.insa-lyon.fr> 1.8.1-2
- add an example packages.

* Wed Sep 22 2004 Fabrice Bellet <Fabrice.Bellet@creatis.insa-lyon.fr> 1.8.1-1
- update to version 1.8.1.

* Thu Sep 09 2004 Fabrice Bellet <Fabrice.Bellet@creatis.insa-lyon.fr> 1.8.0-2
- fix CC and CXX to be consistent with the VTK package.

* Wed Sep 08 2004 Fabrice Bellet <Fabrice.Bellet@creatis.insa-lyon.fr> 1.8.0-1
- update to version 1.8.0.

* Thu May 27 2004 Fabrice Bellet <Fabrice.Bellet@creatis.insa-lyon.fr> 1.6.0-3
- rebuild for Fedora Core 2
- debuginfo rebuild

* Mon Feb 23 2004 Fabrice Bellet <Fabrice.Bellet@creatis.insa-lyon.fr> 1.6.0-2
- update to version 1.6.0.

* Wed Oct 29 2003 Fabrice Bellet <Fabrice.Bellet@creatis.insa-lyon.fr>
- initial release 1.4.0.