Sophie

Sophie

distrib > Mandriva > 2007.0 > i586 > media > contrib-release > by-pkgid > ae8c43ba113a9b6317b79c8ef4b955e0 > files

python-Bio-1.42-1mdv2007.0.i586.rpm

Files

drwxr-xr-x 4096 root root /usr/lib/python2.4/site-packages/Bio
drwxr-xr-x 4096 root root /usr/lib/python2.4/site-packages/Bio/Affy
drwxr-xr-x 4096 root root /usr/lib/python2.4/site-packages/Bio/Ais
drwxr-xr-x 4096 root root /usr/lib/python2.4/site-packages/Bio/Align
drwxr-xr-x 4096 root root /usr/lib/python2.4/site-packages/Bio/AlignAce
drwxr-xr-x 4096 root root /usr/lib/python2.4/site-packages/Bio/Alphabet
drwxr-xr-x 4096 root root /usr/lib/python2.4/site-packages/Bio/Application
drwxr-xr-x 4096 root root /usr/lib/python2.4/site-packages/Bio/Blast
drwxr-xr-x 4096 root root /usr/lib/python2.4/site-packages/Bio/CAPS
drwxr-xr-x 4096 root root /usr/lib/python2.4/site-packages/Bio/CDD
drwxr-xr-x 4096 root root /usr/lib/python2.4/site-packages/Bio/Clustalw
drwxr-xr-x 4096 root root /usr/lib/python2.4/site-packages/Bio/Cluster
drwxr-xr-x 4096 root root /usr/lib/python2.4/site-packages/Bio/Compass
drwxr-xr-x 4096 root root /usr/lib/python2.4/site-packages/Bio/Crystal
-rw-r--r-- 9448 root root /usr/lib/python2.4/site-packages/Bio/DBXRef.py
-rw-r--r-- 4467 root root /usr/lib/python2.4/site-packages/Bio/DBXRef.pyc
drwxr-xr-x 4096 root root /usr/lib/python2.4/site-packages/Bio/Data
-rw-r--r-- 11743 root root /usr/lib/python2.4/site-packages/Bio/Decode.py
-rw-r--r-- 15513 root root /usr/lib/python2.4/site-packages/Bio/Decode.pyc
-rw-r--r-- 6414 root root /usr/lib/python2.4/site-packages/Bio/DocSQL.py
-rw-r--r-- 7634 root root /usr/lib/python2.4/site-packages/Bio/DocSQL.pyc
drwxr-xr-x 4096 root root /usr/lib/python2.4/site-packages/Bio/ECell
drwxr-xr-x 4096 root root /usr/lib/python2.4/site-packages/Bio/EUtils
-rw-r--r-- 1855 root root /usr/lib/python2.4/site-packages/Bio/EZRetrieve.py
-rw-r--r-- 2223 root root /usr/lib/python2.4/site-packages/Bio/EZRetrieve.pyc
drwxr-xr-x 4096 root root /usr/lib/python2.4/site-packages/Bio/Emboss
drwxr-xr-x 4096 root root /usr/lib/python2.4/site-packages/Bio/Encodings
drwxr-xr-x 4096 root root /usr/lib/python2.4/site-packages/Bio/Enzyme
drwxr-xr-x 4096 root root /usr/lib/python2.4/site-packages/Bio/FSSP
drwxr-xr-x 4096 root root /usr/lib/python2.4/site-packages/Bio/Fasta
-rw-r--r-- 4645 root root /usr/lib/python2.4/site-packages/Bio/File.py
-rw-r--r-- 5371 root root /usr/lib/python2.4/site-packages/Bio/File.pyc
-rw-r--r-- 4611 root root /usr/lib/python2.4/site-packages/Bio/FilteredReader.py
-rw-r--r-- 4895 root root /usr/lib/python2.4/site-packages/Bio/FilteredReader.pyc
-rw-r--r-- 5710 root root /usr/lib/python2.4/site-packages/Bio/FormatIO.py
-rw-r--r-- 5517 root root /usr/lib/python2.4/site-packages/Bio/FormatIO.pyc
drwxr-xr-x 4096 root root /usr/lib/python2.4/site-packages/Bio/GA
drwxr-xr-x 4096 root root /usr/lib/python2.4/site-packages/Bio/GFF
drwxr-xr-x 4096 root root /usr/lib/python2.4/site-packages/Bio/GenBank
drwxr-xr-x 4096 root root /usr/lib/python2.4/site-packages/Bio/Geo
drwxr-xr-x 4096 root root /usr/lib/python2.4/site-packages/Bio/Gobase
drwxr-xr-x 4096 root root /usr/lib/python2.4/site-packages/Bio/Graphics
drwxr-xr-x 4096 root root /usr/lib/python2.4/site-packages/Bio/HMM
-rw-r--r-- 2650 root root /usr/lib/python2.4/site-packages/Bio/HotRand.py
-rw-r--r-- 3252 root root /usr/lib/python2.4/site-packages/Bio/HotRand.pyc
-rw-r--r-- 4947 root root /usr/lib/python2.4/site-packages/Bio/Index.py
-rw-r--r-- 4415 root root /usr/lib/python2.4/site-packages/Bio/Index.pyc
drwxr-xr-x 4096 root root /usr/lib/python2.4/site-packages/Bio/IntelliGenetics
drwxr-xr-x 4096 root root /usr/lib/python2.4/site-packages/Bio/InterPro
drwxr-xr-x 4096 root root /usr/lib/python2.4/site-packages/Bio/KEGG
drwxr-xr-x 4096 root root /usr/lib/python2.4/site-packages/Bio/Kabat
drwxr-xr-x 4096 root root /usr/lib/python2.4/site-packages/Bio/LocusLink
-rw-r--r-- 4334 root root /usr/lib/python2.4/site-packages/Bio/LogisticRegression.py
-rw-r--r-- 4073 root root /usr/lib/python2.4/site-packages/Bio/LogisticRegression.pyc
drwxr-xr-x 4096 root root /usr/lib/python2.4/site-packages/Bio/MEME
-rw-r--r-- 22002 root root /usr/lib/python2.4/site-packages/Bio/MarkovModel.py
-rw-r--r-- 17187 root root /usr/lib/python2.4/site-packages/Bio/MarkovModel.pyc
-rw-r--r-- 3255 root root /usr/lib/python2.4/site-packages/Bio/MarkupEditor.py
-rw-r--r-- 4449 root root /usr/lib/python2.4/site-packages/Bio/MarkupEditor.pyc
-rw-r--r-- 9062 root root /usr/lib/python2.4/site-packages/Bio/MaxEntropy.py
-rw-r--r-- 8430 root root /usr/lib/python2.4/site-packages/Bio/MaxEntropy.pyc
drwxr-xr-x 4096 root root /usr/lib/python2.4/site-packages/Bio/Medline
drwxr-xr-x 4096 root root /usr/lib/python2.4/site-packages/Bio/MetaTool
drwxr-xr-x 4096 root root /usr/lib/python2.4/site-packages/Bio/Mindy
drwxr-xr-x 4096 root root /usr/lib/python2.4/site-packages/Bio/MultiProc
drwxr-xr-x 4096 root root /usr/lib/python2.4/site-packages/Bio/NBRF
drwxr-xr-x 4096 root root /usr/lib/python2.4/site-packages/Bio/NMR
-rw-r--r-- 7670 root root /usr/lib/python2.4/site-packages/Bio/NaiveBayes.py
-rw-r--r-- 5749 root root /usr/lib/python2.4/site-packages/Bio/NaiveBayes.pyc
drwxr-xr-x 4096 root root /usr/lib/python2.4/site-packages/Bio/Ndb
-rw-r--r-- 6495 root root /usr/lib/python2.4/site-packages/Bio/NetCatch.py
-rw-r--r-- 7511 root root /usr/lib/python2.4/site-packages/Bio/NetCatch.pyc
drwxr-xr-x 4096 root root /usr/lib/python2.4/site-packages/Bio/NeuralNetwork
drwxr-xr-x 4096 root root /usr/lib/python2.4/site-packages/Bio/Nexus
drwxr-xr-x 4096 root root /usr/lib/python2.4/site-packages/Bio/PDB
-rw-r--r-- 15445 root root /usr/lib/python2.4/site-packages/Bio/ParserSupport.py
-rw-r--r-- 14903 root root /usr/lib/python2.4/site-packages/Bio/ParserSupport.pyc
drwxr-xr-x 4096 root root /usr/lib/python2.4/site-packages/Bio/Parsers
drwxr-xr-x 4096 root root /usr/lib/python2.4/site-packages/Bio/Pathway
-rw-r--r-- 2633 root root /usr/lib/python2.4/site-packages/Bio/PropertyManager.py
-rw-r--r-- 1806 root root /usr/lib/python2.4/site-packages/Bio/PropertyManager.pyc
drwxr-xr-x 4096 root root /usr/lib/python2.4/site-packages/Bio/Prosite
-rw-r--r-- 12649 root root /usr/lib/python2.4/site-packages/Bio/PubMed.py
-rw-r--r-- 10498 root root /usr/lib/python2.4/site-packages/Bio/PubMed.pyc
drwxr-xr-x 4096 root root /usr/lib/python2.4/site-packages/Bio/Rebase
drwxr-xr-x 4096 root root /usr/lib/python2.4/site-packages/Bio/Restriction
drwxr-xr-x 4096 root root /usr/lib/python2.4/site-packages/Bio/SCOP
-rw-r--r-- 4278 root root /usr/lib/python2.4/site-packages/Bio/SGMLExtractor.py
-rw-r--r-- 4656 root root /usr/lib/python2.4/site-packages/Bio/SGMLExtractor.pyc
drwxr-xr-x 4096 root root /usr/lib/python2.4/site-packages/Bio/SVDSuperimposer
drwxr-xr-x 4096 root root /usr/lib/python2.4/site-packages/Bio/Saf
-rw-r--r-- 5688 root root /usr/lib/python2.4/site-packages/Bio/Search.py
-rw-r--r-- 4913 root root /usr/lib/python2.4/site-packages/Bio/Search.pyc
-rw-r--r-- 13063 root root /usr/lib/python2.4/site-packages/Bio/Seq.py
-rw-r--r-- 13150 root root /usr/lib/python2.4/site-packages/Bio/Seq.pyc
-rw-r--r-- 15342 root root /usr/lib/python2.4/site-packages/Bio/SeqFeature.py
-rw-r--r-- 16235 root root /usr/lib/python2.4/site-packages/Bio/SeqFeature.pyc
drwxr-xr-x 4096 root root /usr/lib/python2.4/site-packages/Bio/SeqIO
-rw-r--r-- 1044 root root /usr/lib/python2.4/site-packages/Bio/SeqRecord.py
-rw-r--r-- 1028 root root /usr/lib/python2.4/site-packages/Bio/SeqRecord.pyc
drwxr-xr-x 4096 root root /usr/lib/python2.4/site-packages/Bio/SeqUtils
drwxr-xr-x 4096 root root /usr/lib/python2.4/site-packages/Bio/Sequencing
drwxr-xr-x 4096 root root /usr/lib/python2.4/site-packages/Bio/Statistics
-rw-r--r-- 16412 root root /usr/lib/python2.4/site-packages/Bio/Std.py
-rw-r--r-- 19063 root root /usr/lib/python2.4/site-packages/Bio/Std.pyc
-rw-r--r-- 26355 root root /usr/lib/python2.4/site-packages/Bio/StdHandler.py
-rw-r--r-- 29021 root root /usr/lib/python2.4/site-packages/Bio/StdHandler.pyc
drwxr-xr-x 4096 root root /usr/lib/python2.4/site-packages/Bio/SubsMat
drwxr-xr-x 4096 root root /usr/lib/python2.4/site-packages/Bio/SwissProt
-rw-r--r-- 1051 root root /usr/lib/python2.4/site-packages/Bio/Transcribe.py
-rw-r--r-- 1541 root root /usr/lib/python2.4/site-packages/Bio/Transcribe.pyc
-rw-r--r-- 4122 root root /usr/lib/python2.4/site-packages/Bio/Translate.py
-rw-r--r-- 3786 root root /usr/lib/python2.4/site-packages/Bio/Translate.pyc
drwxr-xr-x 4096 root root /usr/lib/python2.4/site-packages/Bio/UniGene
drwxr-xr-x 4096 root root /usr/lib/python2.4/site-packages/Bio/WWW
drwxr-xr-x 4096 root root /usr/lib/python2.4/site-packages/Bio/Wise
-rw-r--r-- 200 root root /usr/lib/python2.4/site-packages/Bio/Writer.py
-rw-r--r-- 726 root root /usr/lib/python2.4/site-packages/Bio/Writer.pyc
-rw-r--r-- 2103 root root /usr/lib/python2.4/site-packages/Bio/__init__.py
-rw-r--r-- 1974 root root /usr/lib/python2.4/site-packages/Bio/__init__.pyc
-rw-r--r-- 9944 root root /usr/lib/python2.4/site-packages/Bio/biblio.py
-rw-r--r-- 11665 root root /usr/lib/python2.4/site-packages/Bio/biblio.pyc
drwxr-xr-x 4096 root root /usr/lib/python2.4/site-packages/Bio/builders
-rwxr-xr-x 4460 root root /usr/lib/python2.4/site-packages/Bio/cMarkovModel.so
-rwxr-xr-x 5064 root root /usr/lib/python2.4/site-packages/Bio/cdistance.so
-rwxr-xr-x 6232 root root /usr/lib/python2.4/site-packages/Bio/clistfns.so
-rwxr-xr-x 6420 root root /usr/lib/python2.4/site-packages/Bio/cmathfns.so
drwxr-xr-x 4096 root root /usr/lib/python2.4/site-packages/Bio/config
-rwxr-xr-x 12420 root root /usr/lib/python2.4/site-packages/Bio/cpairwise2.so
-rw-r--r-- 641 root root /usr/lib/python2.4/site-packages/Bio/crc.py
-rw-r--r-- 906 root root /usr/lib/python2.4/site-packages/Bio/crc.pyc
-rwxr-xr-x 5276 root root /usr/lib/python2.4/site-packages/Bio/cstringfns.so
drwxr-xr-x 4096 root root /usr/lib/python2.4/site-packages/Bio/dbdefs
-rw-r--r-- 1251 root root /usr/lib/python2.4/site-packages/Bio/distance.py
-rw-r--r-- 1344 root root /usr/lib/python2.4/site-packages/Bio/distance.pyc
drwxr-xr-x 4096 root root /usr/lib/python2.4/site-packages/Bio/expressions
drwxr-xr-x 4096 root root /usr/lib/python2.4/site-packages/Bio/formatdefs
-rw-r--r-- 3566 root root /usr/lib/python2.4/site-packages/Bio/kNN.py
-rw-r--r-- 4134 root root /usr/lib/python2.4/site-packages/Bio/kNN.pyc
-rw-r--r-- 4762 root root /usr/lib/python2.4/site-packages/Bio/lcc.py
-rw-r--r-- 3213 root root /usr/lib/python2.4/site-packages/Bio/lcc.pyc
-rw-r--r-- 4104 root root /usr/lib/python2.4/site-packages/Bio/listfns.py
-rw-r--r-- 4740 root root /usr/lib/python2.4/site-packages/Bio/listfns.pyc
-rw-r--r-- 2452 root root /usr/lib/python2.4/site-packages/Bio/mathfns.py
-rw-r--r-- 2742 root root /usr/lib/python2.4/site-packages/Bio/mathfns.pyc
-rw-r--r-- 33620 root root /usr/lib/python2.4/site-packages/Bio/pairwise2.py
-rw-r--r-- 21253 root root /usr/lib/python2.4/site-packages/Bio/pairwise2.pyc
-rw-r--r-- 3038 root root /usr/lib/python2.4/site-packages/Bio/stringfns.py
-rw-r--r-- 2939 root root /usr/lib/python2.4/site-packages/Bio/stringfns.pyc
-rwxr-xr-x 20016 root root /usr/lib/python2.4/site-packages/Bio/trie.so
-rw-r--r-- 2714 root root /usr/lib/python2.4/site-packages/Bio/triefind.py
-rw-r--r-- 2925 root root /usr/lib/python2.4/site-packages/Bio/triefind.pyc
-rw-r--r-- 3483 root root /usr/lib/python2.4/site-packages/Bio/utils.py
-rw-r--r-- 4491 root root /usr/lib/python2.4/site-packages/Bio/utils.pyc
drwxr-xr-x 4096 root root /usr/lib/python2.4/site-packages/Bio/writers
-rw-r--r-- 5729 root root /usr/lib/python2.4/site-packages/Bio/Affy/CelFile.py
-rw-r--r-- 6703 root root /usr/lib/python2.4/site-packages/Bio/Affy/CelFile.pyc
-rw-r--r-- 60 root root /usr/lib/python2.4/site-packages/Bio/Affy/__init__.py
-rw-r--r-- 209 root root /usr/lib/python2.4/site-packages/Bio/Affy/__init__.pyc
-rw-r--r-- 8404 root root /usr/lib/python2.4/site-packages/Bio/Ais/__init__.py
-rw-r--r-- 8215 root root /usr/lib/python2.4/site-packages/Bio/Ais/__init__.pyc
-rw-r--r-- 27405 root root /usr/lib/python2.4/site-packages/Bio/Align/AlignInfo.py
-rw-r--r-- 19469 root root /usr/lib/python2.4/site-packages/Bio/Align/AlignInfo.pyc
-rw-r--r-- 1798 root root /usr/lib/python2.4/site-packages/Bio/Align/FormatConvert.py
-rw-r--r-- 2278 root root /usr/lib/python2.4/site-packages/Bio/Align/FormatConvert.pyc
-rw-r--r-- 3966 root root /usr/lib/python2.4/site-packages/Bio/Align/Generic.py
-rw-r--r-- 4046 root root /usr/lib/python2.4/site-packages/Bio/Align/Generic.pyc
-rw-r--r-- 50 root root /usr/lib/python2.4/site-packages/Bio/Align/__init__.py
-rw-r--r-- 200 root root /usr/lib/python2.4/site-packages/Bio/Align/__init__.pyc
-rw-r--r-- 2275 root root /usr/lib/python2.4/site-packages/Bio/AlignAce/AlignAceStandalone.py
-rw-r--r-- 2441 root root /usr/lib/python2.4/site-packages/Bio/AlignAce/AlignAceStandalone.pyc
-rw-r--r-- 2960 root root /usr/lib/python2.4/site-packages/Bio/AlignAce/Applications.py
-rw-r--r-- 3873 root root /usr/lib/python2.4/site-packages/Bio/AlignAce/Applications.pyc
-rw-r--r-- 1037 root root /usr/lib/python2.4/site-packages/Bio/AlignAce/CompareAceStandalone.py
-rw-r--r-- 1228 root root /usr/lib/python2.4/site-packages/Bio/AlignAce/CompareAceStandalone.pyc
-rw-r--r-- 6374 root root /usr/lib/python2.4/site-packages/Bio/AlignAce/Motif.py
-rw-r--r-- 6497 root root /usr/lib/python2.4/site-packages/Bio/AlignAce/Motif.pyc
-rw-r--r-- 3148 root root /usr/lib/python2.4/site-packages/Bio/AlignAce/Parser.py
-rw-r--r-- 4916 root root /usr/lib/python2.4/site-packages/Bio/AlignAce/Parser.pyc
-rw-r--r-- 3011 root root /usr/lib/python2.4/site-packages/Bio/AlignAce/Scanner.py
-rw-r--r-- 3200 root root /usr/lib/python2.4/site-packages/Bio/AlignAce/Scanner.pyc
-rw-r--r-- 424 root root /usr/lib/python2.4/site-packages/Bio/AlignAce/__init__.py
-rw-r--r-- 347 root root /usr/lib/python2.4/site-packages/Bio/AlignAce/__init__.pyc
-rw-r--r-- 3560 root root /usr/lib/python2.4/site-packages/Bio/Alphabet/IUPAC.py
-rw-r--r-- 2550 root root /usr/lib/python2.4/site-packages/Bio/Alphabet/IUPAC.pyc
-rw-r--r-- 4172 root root /usr/lib/python2.4/site-packages/Bio/Alphabet/Reduced.py
-rw-r--r-- 2844 root root /usr/lib/python2.4/site-packages/Bio/Alphabet/Reduced.pyc
-rw-r--r-- 2937 root root /usr/lib/python2.4/site-packages/Bio/Alphabet/__init__.py
-rw-r--r-- 4258 root root /usr/lib/python2.4/site-packages/Bio/Alphabet/__init__.pyc
-rw-r--r-- 7289 root root /usr/lib/python2.4/site-packages/Bio/Application/__init__.py
-rw-r--r-- 7600 root root /usr/lib/python2.4/site-packages/Bio/Application/__init__.pyc
-rw-r--r-- 5910 root root /usr/lib/python2.4/site-packages/Bio/Blast/Applications.py
-rw-r--r-- 5153 root root /usr/lib/python2.4/site-packages/Bio/Blast/Applications.pyc
-rw-r--r-- 74879 root root /usr/lib/python2.4/site-packages/Bio/Blast/NCBIStandalone.py
-rw-r--r-- 55579 root root /usr/lib/python2.4/site-packages/Bio/Blast/NCBIStandalone.pyc
-rw-r--r-- 45684 root root /usr/lib/python2.4/site-packages/Bio/Blast/NCBIWWW.py
-rw-r--r-- 27786 root root /usr/lib/python2.4/site-packages/Bio/Blast/NCBIWWW.pyc
-rw-r--r-- 12242 root root /usr/lib/python2.4/site-packages/Bio/Blast/NCBIXML.py
-rw-r--r-- 13627 root root /usr/lib/python2.4/site-packages/Bio/Blast/NCBIXML.pyc
-rw-r--r-- 3467 root root /usr/lib/python2.4/site-packages/Bio/Blast/ParseBlastTable.py
-rw-r--r-- 4082 root root /usr/lib/python2.4/site-packages/Bio/Blast/ParseBlastTable.pyc
-rw-r--r-- 12042 root root /usr/lib/python2.4/site-packages/Bio/Blast/Record.py
-rw-r--r-- 13443 root root /usr/lib/python2.4/site-packages/Bio/Blast/Record.pyc
-rw-r--r-- 281 root root /usr/lib/python2.4/site-packages/Bio/Blast/__init__.py
-rw-r--r-- 206 root root /usr/lib/python2.4/site-packages/Bio/Blast/__init__.pyc
-rw-r--r-- 3152 root root /usr/lib/python2.4/site-packages/Bio/CAPS/__init__.py
-rw-r--r-- 3628 root root /usr/lib/python2.4/site-packages/Bio/CAPS/__init__.pyc
-rw-r--r-- 3069 root root /usr/lib/python2.4/site-packages/Bio/CDD/Record.py
-rw-r--r-- 3005 root root /usr/lib/python2.4/site-packages/Bio/CDD/Record.pyc
-rw-r--r-- 10550 root root /usr/lib/python2.4/site-packages/Bio/CDD/__init__.py
-rw-r--r-- 13946 root root /usr/lib/python2.4/site-packages/Bio/CDD/__init__.pyc
-rw-r--r-- 6445 root root /usr/lib/python2.4/site-packages/Bio/CDD/cdd_format.py
-rw-r--r-- 5105 root root /usr/lib/python2.4/site-packages/Bio/CDD/cdd_format.pyc
-rw-r--r-- 20030 root root /usr/lib/python2.4/site-packages/Bio/Clustalw/__init__.py
-rw-r--r-- 16088 root root /usr/lib/python2.4/site-packages/Bio/Clustalw/__init__.pyc
-rw-r--r-- 2052 root root /usr/lib/python2.4/site-packages/Bio/Clustalw/clustal_format.py
-rw-r--r-- 1412 root root /usr/lib/python2.4/site-packages/Bio/Clustalw/clustal_format.pyc
-rw-r--r-- 13279 root root /usr/lib/python2.4/site-packages/Bio/Cluster/__init__.py
-rw-r--r-- 12810 root root /usr/lib/python2.4/site-packages/Bio/Cluster/__init__.pyc
-rwxr-xr-x110916 root root /usr/lib/python2.4/site-packages/Bio/Cluster/cluster.so
-rw-r--r-- 8796 root root /usr/lib/python2.4/site-packages/Bio/Compass/__init__.py
-rw-r--r-- 10179 root root /usr/lib/python2.4/site-packages/Bio/Compass/__init__.pyc
-rw-r--r-- 8604 root root /usr/lib/python2.4/site-packages/Bio/Crystal/__init__.py
-rw-r--r-- 11730 root root /usr/lib/python2.4/site-packages/Bio/Crystal/__init__.pyc
-rw-r--r-- 28816 root root /usr/lib/python2.4/site-packages/Bio/Data/CodonTable.py
-rw-r--r-- 17275 root root /usr/lib/python2.4/site-packages/Bio/Data/CodonTable.pyc
-rw-r--r-- 3858 root root /usr/lib/python2.4/site-packages/Bio/Data/IUPACData.py
-rw-r--r-- 3633 root root /usr/lib/python2.4/site-packages/Bio/Data/IUPACData.pyc
-rw-r--r-- 88 root root /usr/lib/python2.4/site-packages/Bio/Data/__init__.py
-rw-r--r-- 211 root root /usr/lib/python2.4/site-packages/Bio/Data/__init__.pyc
-rw-r--r-- 13143 root root /usr/lib/python2.4/site-packages/Bio/ECell/Record.py
-rw-r--r-- 8177 root root /usr/lib/python2.4/site-packages/Bio/ECell/Record.pyc
-rw-r--r-- 14130 root root /usr/lib/python2.4/site-packages/Bio/ECell/__init__.py
-rw-r--r-- 13785 root root /usr/lib/python2.4/site-packages/Bio/ECell/__init__.pyc
-rw-r--r-- 2780 root root /usr/lib/python2.4/site-packages/Bio/ECell/ecell_format.py
-rw-r--r-- 2319 root root /usr/lib/python2.4/site-packages/Bio/ECell/ecell_format.pyc
-rw-r--r-- 2390 root root /usr/lib/python2.4/site-packages/Bio/EUtils/Config.py
-rw-r--r-- 1979 root root /usr/lib/python2.4/site-packages/Bio/EUtils/Config.pyc
-rw-r--r-- 10926 root root /usr/lib/python2.4/site-packages/Bio/EUtils/DBIdsClient.py
-rw-r--r-- 11994 root root /usr/lib/python2.4/site-packages/Bio/EUtils/DBIdsClient.pyc
drwxr-xr-x 4096 root root /usr/lib/python2.4/site-packages/Bio/EUtils/DTDs
-rw-r--r-- 23750 root root /usr/lib/python2.4/site-packages/Bio/EUtils/Datatypes.py
-rw-r--r-- 29382 root root /usr/lib/python2.4/site-packages/Bio/EUtils/Datatypes.pyc
-rw-r--r-- 13448 root root /usr/lib/python2.4/site-packages/Bio/EUtils/HistoryClient.py
-rw-r--r-- 13211 root root /usr/lib/python2.4/site-packages/Bio/EUtils/HistoryClient.pyc
-rw-r--r-- 3047 root root /usr/lib/python2.4/site-packages/Bio/EUtils/Mixins.py
-rw-r--r-- 2474 root root /usr/lib/python2.4/site-packages/Bio/EUtils/Mixins.pyc
-rw-r--r-- 14568 root root /usr/lib/python2.4/site-packages/Bio/EUtils/MultiDict.py
-rw-r--r-- 16449 root root /usr/lib/python2.4/site-packages/Bio/EUtils/MultiDict.pyc
-rw-r--r-- 31242 root root /usr/lib/python2.4/site-packages/Bio/EUtils/POM.py
-rw-r--r-- 43952 root root /usr/lib/python2.4/site-packages/Bio/EUtils/POM.pyc
-rw-r--r-- 11563 root root /usr/lib/python2.4/site-packages/Bio/EUtils/ReseekFile.py
-rw-r--r-- 10944 root root /usr/lib/python2.4/site-packages/Bio/EUtils/ReseekFile.pyc
-rw-r--r-- 47176 root root /usr/lib/python2.4/site-packages/Bio/EUtils/ThinClient.py
-rw-r--r-- 41969 root root /usr/lib/python2.4/site-packages/Bio/EUtils/ThinClient.pyc
-rw-r--r-- 540 root root /usr/lib/python2.4/site-packages/Bio/EUtils/__init__.py
-rw-r--r-- 1029 root root /usr/lib/python2.4/site-packages/Bio/EUtils/__init__.pyc
-rw-r--r-- 2058 root root /usr/lib/python2.4/site-packages/Bio/EUtils/dtd2py.py
-rw-r--r-- 2437 root root /usr/lib/python2.4/site-packages/Bio/EUtils/dtd2py.pyc
-rw-r--r-- 19794 root root /usr/lib/python2.4/site-packages/Bio/EUtils/parse.py
-rw-r--r-- 15769 root root /usr/lib/python2.4/site-packages/Bio/EUtils/parse.pyc
-rw-r--r-- 1962 root root /usr/lib/python2.4/site-packages/Bio/EUtils/setup.py
-rw-r--r-- 2201 root root /usr/lib/python2.4/site-packages/Bio/EUtils/setup.pyc
-rw-r--r-- 8265 root root /usr/lib/python2.4/site-packages/Bio/EUtils/sourcegen.py
-rw-r--r-- 12153 root root /usr/lib/python2.4/site-packages/Bio/EUtils/sourcegen.pyc
-rwxr-xr-x 11585 root root /usr/lib/python2.4/site-packages/Bio/EUtils/DTDs/LinkOut.dtd
-rw-r--r-- 14500 root root /usr/lib/python2.4/site-packages/Bio/EUtils/DTDs/LinkOut.py
-rw-r--r-- 12853 root root /usr/lib/python2.4/site-packages/Bio/EUtils/DTDs/LinkOut.pyc
-rw-r--r-- 18 root root /usr/lib/python2.4/site-packages/Bio/EUtils/DTDs/__init__.py
-rw-r--r-- 140 root root /usr/lib/python2.4/site-packages/Bio/EUtils/DTDs/__init__.pyc
-rwxr-xr-x 1171 root root /usr/lib/python2.4/site-packages/Bio/EUtils/DTDs/eInfo_020511.dtd
-rw-r--r-- 3071 root root /usr/lib/python2.4/site-packages/Bio/EUtils/DTDs/eInfo_020511.py
-rw-r--r-- 5685 root root /usr/lib/python2.4/site-packages/Bio/EUtils/DTDs/eInfo_020511.pyc
-rwxr-xr-x 1618 root root /usr/lib/python2.4/site-packages/Bio/EUtils/DTDs/eLink_020511.dtd
-rw-r--r-- 3827 root root /usr/lib/python2.4/site-packages/Bio/EUtils/DTDs/eLink_020511.py
-rw-r--r-- 6942 root root /usr/lib/python2.4/site-packages/Bio/EUtils/DTDs/eLink_020511.pyc
-rwxr-xr-x 656 root root /usr/lib/python2.4/site-packages/Bio/EUtils/DTDs/ePost_020511.dtd
-rw-r--r-- 1216 root root /usr/lib/python2.4/site-packages/Bio/EUtils/DTDs/ePost_020511.py
-rw-r--r-- 1846 root root /usr/lib/python2.4/site-packages/Bio/EUtils/DTDs/ePost_020511.pyc
-rwxr-xr-x 2397 root root /usr/lib/python2.4/site-packages/Bio/EUtils/DTDs/eSearch_020511.dtd
-rw-r--r-- 4226 root root /usr/lib/python2.4/site-packages/Bio/EUtils/DTDs/eSearch_020511.py
-rw-r--r-- 7695 root root /usr/lib/python2.4/site-packages/Bio/EUtils/DTDs/eSearch_020511.pyc
-rwxr-xr-x 605 root root /usr/lib/python2.4/site-packages/Bio/EUtils/DTDs/eSummary_020511.dtd
-rw-r--r-- 1150 root root /usr/lib/python2.4/site-packages/Bio/EUtils/DTDs/eSummary_020511.py
-rw-r--r-- 1813 root root /usr/lib/python2.4/site-packages/Bio/EUtils/DTDs/eSummary_020511.pyc
-rw-r--r-- 21424 root root /usr/lib/python2.4/site-packages/Bio/Emboss/Applications.py
-rw-r--r-- 19132 root root /usr/lib/python2.4/site-packages/Bio/Emboss/Applications.pyc
-rw-r--r-- 8654 root root /usr/lib/python2.4/site-packages/Bio/Emboss/Primer.py
-rw-r--r-- 11651 root root /usr/lib/python2.4/site-packages/Bio/Emboss/Primer.pyc
-rw-r--r-- 65 root root /usr/lib/python2.4/site-packages/Bio/Emboss/__init__.py
-rw-r--r-- 216 root root /usr/lib/python2.4/site-packages/Bio/Emboss/__init__.pyc
-rw-r--r-- 5293 root root /usr/lib/python2.4/site-packages/Bio/Emboss/primer3_format.py
-rw-r--r-- 2624 root root /usr/lib/python2.4/site-packages/Bio/Emboss/primer3_format.pyc
-rw-r--r-- 2040 root root /usr/lib/python2.4/site-packages/Bio/Emboss/primersearch_format.py
-rw-r--r-- 1306 root root /usr/lib/python2.4/site-packages/Bio/Emboss/primersearch_format.pyc
-rw-r--r-- 5116 root root /usr/lib/python2.4/site-packages/Bio/Encodings/IUPACEncoding.py
-rw-r--r-- 3410 root root /usr/lib/python2.4/site-packages/Bio/Encodings/IUPACEncoding.pyc
-rw-r--r-- 102 root root /usr/lib/python2.4/site-packages/Bio/Encodings/__init__.py
-rw-r--r-- 229 root root /usr/lib/python2.4/site-packages/Bio/Encodings/__init__.pyc
-rw-r--r-- 8109 root root /usr/lib/python2.4/site-packages/Bio/Enzyme/__init__.py
-rw-r--r-- 9543 root root /usr/lib/python2.4/site-packages/Bio/Enzyme/__init__.pyc
-rw-r--r-- 3837 root root /usr/lib/python2.4/site-packages/Bio/FSSP/FSSPTools.py
-rw-r--r-- 3325 root root /usr/lib/python2.4/site-packages/Bio/FSSP/FSSPTools.pyc
-rw-r--r-- 8768 root root /usr/lib/python2.4/site-packages/Bio/FSSP/__init__.py
-rw-r--r-- 8536 root root /usr/lib/python2.4/site-packages/Bio/FSSP/__init__.pyc
-rw-r--r-- 839 root root /usr/lib/python2.4/site-packages/Bio/FSSP/fssp_rec.py
-rw-r--r-- 1679 root root /usr/lib/python2.4/site-packages/Bio/FSSP/fssp_rec.pyc
-rw-r--r-- 2358 root root /usr/lib/python2.4/site-packages/Bio/Fasta/FastaAlign.py
-rw-r--r-- 2700 root root /usr/lib/python2.4/site-packages/Bio/Fasta/FastaAlign.pyc
-rw-r--r-- 10917 root root /usr/lib/python2.4/site-packages/Bio/Fasta/__init__.py
-rw-r--r-- 12567 root root /usr/lib/python2.4/site-packages/Bio/Fasta/__init__.pyc
drwxr-xr-x 4096 root root /usr/lib/python2.4/site-packages/Bio/GA/Crossover
-rw-r--r-- 2379 root root /usr/lib/python2.4/site-packages/Bio/GA/Evolver.py
-rw-r--r-- 2484 root root /usr/lib/python2.4/site-packages/Bio/GA/Evolver.pyc
drwxr-xr-x 4096 root root /usr/lib/python2.4/site-packages/Bio/GA/Mutation
-rw-r--r-- 4884 root root /usr/lib/python2.4/site-packages/Bio/GA/Organism.py
-rw-r--r-- 5119 root root /usr/lib/python2.4/site-packages/Bio/GA/Organism.pyc
drwxr-xr-x 4096 root root /usr/lib/python2.4/site-packages/Bio/GA/Repair
drwxr-xr-x 4096 root root /usr/lib/python2.4/site-packages/Bio/GA/Selection
-rw-r--r-- 42 root root /usr/lib/python2.4/site-packages/Bio/GA/__init__.py
-rw-r--r-- 131 root root /usr/lib/python2.4/site-packages/Bio/GA/__init__.pyc
-rw-r--r-- 2135 root root /usr/lib/python2.4/site-packages/Bio/GA/Crossover/General.py
-rw-r--r-- 2238 root root /usr/lib/python2.4/site-packages/Bio/GA/Crossover/General.pyc
-rw-r--r-- 5485 root root /usr/lib/python2.4/site-packages/Bio/GA/Crossover/GeneralPoint.py
-rw-r--r-- 5993 root root /usr/lib/python2.4/site-packages/Bio/GA/Crossover/GeneralPoint.pyc
-rw-r--r-- 798 root root /usr/lib/python2.4/site-packages/Bio/GA/Crossover/Point.py
-rw-r--r-- 1193 root root /usr/lib/python2.4/site-packages/Bio/GA/Crossover/Point.pyc
-rw-r--r-- 1065 root root /usr/lib/python2.4/site-packages/Bio/GA/Crossover/TwoPoint.py
-rw-r--r-- 1454 root root /usr/lib/python2.4/site-packages/Bio/GA/Crossover/TwoPoint.pyc
-rw-r--r-- 1675 root root /usr/lib/python2.4/site-packages/Bio/GA/Crossover/Uniform.py
-rw-r--r-- 1932 root root /usr/lib/python2.4/site-packages/Bio/GA/Crossover/Uniform.pyc
-rw-r--r-- 42 root root /usr/lib/python2.4/site-packages/Bio/GA/Crossover/__init__.py
-rw-r--r-- 141 root root /usr/lib/python2.4/site-packages/Bio/GA/Crossover/__init__.pyc
-rw-r--r-- 1406 root root /usr/lib/python2.4/site-packages/Bio/GA/Mutation/General.py
-rw-r--r-- 1711 root root /usr/lib/python2.4/site-packages/Bio/GA/Mutation/General.pyc
-rw-r--r-- 3150 root root /usr/lib/python2.4/site-packages/Bio/GA/Mutation/Simple.py
-rw-r--r-- 2845 root root /usr/lib/python2.4/site-packages/Bio/GA/Mutation/Simple.pyc
-rw-r--r-- 42 root root /usr/lib/python2.4/site-packages/Bio/GA/Mutation/__init__.py
-rw-r--r-- 140 root root /usr/lib/python2.4/site-packages/Bio/GA/Mutation/__init__.pyc
-rw-r--r-- 2327 root root /usr/lib/python2.4/site-packages/Bio/GA/Repair/Stabilizing.py
-rw-r--r-- 2390 root root /usr/lib/python2.4/site-packages/Bio/GA/Repair/Stabilizing.pyc
-rw-r--r-- 42 root root /usr/lib/python2.4/site-packages/Bio/GA/Repair/__init__.py
-rw-r--r-- 138 root root /usr/lib/python2.4/site-packages/Bio/GA/Repair/__init__.pyc
-rw-r--r-- 2076 root root /usr/lib/python2.4/site-packages/Bio/GA/Selection/Abstract.py
-rw-r--r-- 2359 root root /usr/lib/python2.4/site-packages/Bio/GA/Selection/Abstract.pyc
-rw-r--r-- 3453 root root /usr/lib/python2.4/site-packages/Bio/GA/Selection/Diversity.py
-rw-r--r-- 3360 root root /usr/lib/python2.4/site-packages/Bio/GA/Selection/Diversity.pyc
-rw-r--r-- 4700 root root /usr/lib/python2.4/site-packages/Bio/GA/Selection/RouletteWheel.py
-rw-r--r-- 4000 root root /usr/lib/python2.4/site-packages/Bio/GA/Selection/RouletteWheel.pyc
-rw-r--r-- 2999 root root /usr/lib/python2.4/site-packages/Bio/GA/Selection/Tournament.py
-rw-r--r-- 2833 root root /usr/lib/python2.4/site-packages/Bio/GA/Selection/Tournament.pyc
-rw-r--r-- 42 root root /usr/lib/python2.4/site-packages/Bio/GA/Selection/__init__.py
-rw-r--r-- 141 root root /usr/lib/python2.4/site-packages/Bio/GA/Selection/__init__.pyc
-rw-r--r-- 4101 root root /usr/lib/python2.4/site-packages/Bio/GFF/GenericTools.py
-rw-r--r-- 6111 root root /usr/lib/python2.4/site-packages/Bio/GFF/GenericTools.pyc
-rw-r--r-- 14031 root root /usr/lib/python2.4/site-packages/Bio/GFF/__init__.py
-rw-r--r-- 15376 root root /usr/lib/python2.4/site-packages/Bio/GFF/__init__.pyc
-rw-r--r-- 1782 root root /usr/lib/python2.4/site-packages/Bio/GFF/binning.py
-rw-r--r-- 2114 root root /usr/lib/python2.4/site-packages/Bio/GFF/binning.pyc
-rw-r--r-- 20336 root root /usr/lib/python2.4/site-packages/Bio/GFF/easy.py
-rw-r--r-- 22115 root root /usr/lib/python2.4/site-packages/Bio/GFF/easy.pyc
-rw-r--r-- 8833 root root /usr/lib/python2.4/site-packages/Bio/GenBank/LocationParser.py
-rw-r--r-- 14147 root root /usr/lib/python2.4/site-packages/Bio/GenBank/LocationParser.pyc
-rw-r--r-- 20819 root root /usr/lib/python2.4/site-packages/Bio/GenBank/Record.py
-rw-r--r-- 18649 root root /usr/lib/python2.4/site-packages/Bio/GenBank/Record.pyc
-rw-r--r-- 80552 root root /usr/lib/python2.4/site-packages/Bio/GenBank/__init__.py
-rw-r--r-- 58681 root root /usr/lib/python2.4/site-packages/Bio/GenBank/__init__.pyc
-rw-r--r-- 1786 root root /usr/lib/python2.4/site-packages/Bio/GenBank/utils.py
-rw-r--r-- 2168 root root /usr/lib/python2.4/site-packages/Bio/GenBank/utils.pyc
-rw-r--r-- 3649 root root /usr/lib/python2.4/site-packages/Bio/Geo/Record.py
-rw-r--r-- 2997 root root /usr/lib/python2.4/site-packages/Bio/Geo/Record.pyc
-rw-r--r-- 7006 root root /usr/lib/python2.4/site-packages/Bio/Geo/__init__.py
-rw-r--r-- 8430 root root /usr/lib/python2.4/site-packages/Bio/Geo/__init__.pyc
-rw-r--r-- 4891 root root /usr/lib/python2.4/site-packages/Bio/Geo/geo_format.py
-rw-r--r-- 3398 root root /usr/lib/python2.4/site-packages/Bio/Geo/geo_format.pyc
-rw-r--r-- 14811 root root /usr/lib/python2.4/site-packages/Bio/Gobase/__init__.py
-rw-r--r-- 15075 root root /usr/lib/python2.4/site-packages/Bio/Gobase/__init__.pyc
-rw-r--r-- 17083 root root /usr/lib/python2.4/site-packages/Bio/Graphics/BasicChromosome.py
-rw-r--r-- 15138 root root /usr/lib/python2.4/site-packages/Bio/Graphics/BasicChromosome.pyc
-rw-r--r-- 6170 root root /usr/lib/python2.4/site-packages/Bio/Graphics/Comparative.py
-rw-r--r-- 5921 root root /usr/lib/python2.4/site-packages/Bio/Graphics/Comparative.pyc
-rw-r--r-- 6722 root root /usr/lib/python2.4/site-packages/Bio/Graphics/DisplayRepresentation.py
-rw-r--r-- 6358 root root /usr/lib/python2.4/site-packages/Bio/Graphics/DisplayRepresentation.pyc
-rw-r--r-- 9355 root root /usr/lib/python2.4/site-packages/Bio/Graphics/Distribution.py
-rw-r--r-- 8630 root root /usr/lib/python2.4/site-packages/Bio/Graphics/Distribution.pyc
-rw-r--r-- 42 root root /usr/lib/python2.4/site-packages/Bio/Graphics/__init__.py
-rw-r--r-- 137 root root /usr/lib/python2.4/site-packages/Bio/Graphics/__init__.pyc
-rw-r--r-- 12658 root root /usr/lib/python2.4/site-packages/Bio/HMM/DynamicProgramming.py
-rw-r--r-- 8906 root root /usr/lib/python2.4/site-packages/Bio/HMM/DynamicProgramming.pyc
-rw-r--r-- 19399 root root /usr/lib/python2.4/site-packages/Bio/HMM/MarkovModel.py
-rw-r--r-- 15467 root root /usr/lib/python2.4/site-packages/Bio/HMM/MarkovModel.pyc
-rw-r--r-- 16944 root root /usr/lib/python2.4/site-packages/Bio/HMM/Trainer.py
-rw-r--r-- 12639 root root /usr/lib/python2.4/site-packages/Bio/HMM/Trainer.pyc
-rw-r--r-- 2120 root root /usr/lib/python2.4/site-packages/Bio/HMM/Utilities.py
-rw-r--r-- 1467 root root /usr/lib/python2.4/site-packages/Bio/HMM/Utilities.pyc
-rw-r--r-- 42 root root /usr/lib/python2.4/site-packages/Bio/HMM/__init__.py
-rw-r--r-- 132 root root /usr/lib/python2.4/site-packages/Bio/HMM/__init__.pyc
-rw-r--r-- 1704 root root /usr/lib/python2.4/site-packages/Bio/IntelliGenetics/Record.py
-rw-r--r-- 1850 root root /usr/lib/python2.4/site-packages/Bio/IntelliGenetics/Record.pyc
-rw-r--r-- 5618 root root /usr/lib/python2.4/site-packages/Bio/IntelliGenetics/__init__.py
-rw-r--r-- 6424 root root /usr/lib/python2.4/site-packages/Bio/IntelliGenetics/__init__.pyc
-rw-r--r-- 1158 root root /usr/lib/python2.4/site-packages/Bio/IntelliGenetics/intelligenetics_format.py
-rw-r--r-- 908 root root /usr/lib/python2.4/site-packages/Bio/IntelliGenetics/intelligenetics_format.pyc
-rw-r--r-- 8748 root root /usr/lib/python2.4/site-packages/Bio/InterPro/__init__.py
-rw-r--r-- 8419 root root /usr/lib/python2.4/site-packages/Bio/InterPro/__init__.pyc
drwxr-xr-x 4096 root root /usr/lib/python2.4/site-packages/Bio/KEGG/Compound
drwxr-xr-x 4096 root root /usr/lib/python2.4/site-packages/Bio/KEGG/Enzyme
drwxr-xr-x 4096 root root /usr/lib/python2.4/site-packages/Bio/KEGG/Map
-rw-r--r-- 2731 root root /usr/lib/python2.4/site-packages/Bio/KEGG/__init__.py
-rw-r--r-- 2350 root root /usr/lib/python2.4/site-packages/Bio/KEGG/__init__.pyc
-rw-r--r-- 10071 root root /usr/lib/python2.4/site-packages/Bio/KEGG/Compound/__init__.py
-rw-r--r-- 12059 root root /usr/lib/python2.4/site-packages/Bio/KEGG/Compound/__init__.pyc
-rw-r--r-- 6319 root root /usr/lib/python2.4/site-packages/Bio/KEGG/Compound/compound_format.py
-rw-r--r-- 5022 root root /usr/lib/python2.4/site-packages/Bio/KEGG/Compound/compound_format.pyc
-rw-r--r-- 15349 root root /usr/lib/python2.4/site-packages/Bio/KEGG/Enzyme/__init__.py
-rw-r--r-- 17884 root root /usr/lib/python2.4/site-packages/Bio/KEGG/Enzyme/__init__.pyc
-rw-r--r-- 8869 root root /usr/lib/python2.4/site-packages/Bio/KEGG/Enzyme/enzyme_format.py
-rw-r--r-- 5832 root root /usr/lib/python2.4/site-packages/Bio/KEGG/Enzyme/enzyme_format.pyc
-rw-r--r-- 5746 root root /usr/lib/python2.4/site-packages/Bio/KEGG/Map/__init__.py
-rw-r--r-- 6678 root root /usr/lib/python2.4/site-packages/Bio/KEGG/Map/__init__.pyc
-rw-r--r-- 1667 root root /usr/lib/python2.4/site-packages/Bio/KEGG/Map/map_format.py
-rw-r--r-- 1572 root root /usr/lib/python2.4/site-packages/Bio/KEGG/Map/map_format.pyc
-rw-r--r-- 2790 root root /usr/lib/python2.4/site-packages/Bio/Kabat/Record.py
-rw-r--r-- 2907 root root /usr/lib/python2.4/site-packages/Bio/Kabat/Record.pyc
-rw-r--r-- 12144 root root /usr/lib/python2.4/site-packages/Bio/Kabat/__init__.py
-rw-r--r-- 13874 root root /usr/lib/python2.4/site-packages/Bio/Kabat/__init__.pyc
-rw-r--r-- 5473 root root /usr/lib/python2.4/site-packages/Bio/Kabat/kabat_format.py
-rw-r--r-- 3985 root root /usr/lib/python2.4/site-packages/Bio/Kabat/kabat_format.pyc
-rw-r--r-- 7703 root root /usr/lib/python2.4/site-packages/Bio/LocusLink/__init__.py
-rw-r--r-- 8881 root root /usr/lib/python2.4/site-packages/Bio/LocusLink/__init__.pyc
-rw-r--r-- 3110 root root /usr/lib/python2.4/site-packages/Bio/LocusLink/locus_format.py
-rw-r--r-- 2826 root root /usr/lib/python2.4/site-packages/Bio/LocusLink/locus_format.pyc
-rw-r--r-- 26500 root root /usr/lib/python2.4/site-packages/Bio/LocusLink/web_parse.py
-rw-r--r-- 19122 root root /usr/lib/python2.4/site-packages/Bio/LocusLink/web_parse.pyc
-rw-r--r-- 8618 root root /usr/lib/python2.4/site-packages/Bio/MEME/Motif.py
-rw-r--r-- 9926 root root /usr/lib/python2.4/site-packages/Bio/MEME/Motif.pyc
-rw-r--r-- 24067 root root /usr/lib/python2.4/site-packages/Bio/MEME/Parser.py
-rw-r--r-- 22603 root root /usr/lib/python2.4/site-packages/Bio/MEME/Parser.pyc
-rw-r--r-- 308 root root /usr/lib/python2.4/site-packages/Bio/MEME/__init__.py
-rw-r--r-- 229 root root /usr/lib/python2.4/site-packages/Bio/MEME/__init__.pyc
-rw-r--r-- 9268 root root /usr/lib/python2.4/site-packages/Bio/Medline/NLMMedlineXML.py
-rw-r--r-- 9401 root root /usr/lib/python2.4/site-packages/Bio/Medline/NLMMedlineXML.pyc
-rw-r--r-- 18400 root root /usr/lib/python2.4/site-packages/Bio/Medline/__init__.py
-rw-r--r-- 19198 root root /usr/lib/python2.4/site-packages/Bio/Medline/__init__.pyc
-rw-r--r-- 10637 root root /usr/lib/python2.4/site-packages/Bio/Medline/nlmmedline_001211_format.py
-rw-r--r-- 7858 root root /usr/lib/python2.4/site-packages/Bio/Medline/nlmmedline_001211_format.pyc
-rw-r--r-- 11402 root root /usr/lib/python2.4/site-packages/Bio/Medline/nlmmedline_010319_format.py
-rw-r--r-- 8031 root root /usr/lib/python2.4/site-packages/Bio/Medline/nlmmedline_010319_format.pyc
-rw-r--r-- 11705 root root /usr/lib/python2.4/site-packages/Bio/Medline/nlmmedline_011101_format.py
-rw-r--r-- 8263 root root /usr/lib/python2.4/site-packages/Bio/Medline/nlmmedline_011101_format.pyc
-rw-r--r-- 13317 root root /usr/lib/python2.4/site-packages/Bio/Medline/nlmmedline_031101_format.py
-rw-r--r-- 9444 root root /usr/lib/python2.4/site-packages/Bio/Medline/nlmmedline_031101_format.pyc
-rw-r--r-- 4864 root root /usr/lib/python2.4/site-packages/Bio/MetaTool/Input.py
-rw-r--r-- 3854 root root /usr/lib/python2.4/site-packages/Bio/MetaTool/Input.pyc
-rw-r--r-- 4357 root root /usr/lib/python2.4/site-packages/Bio/MetaTool/Record.py
-rw-r--r-- 4490 root root /usr/lib/python2.4/site-packages/Bio/MetaTool/Record.pyc
-rw-r--r-- 13886 root root /usr/lib/python2.4/site-packages/Bio/MetaTool/__init__.py
-rw-r--r-- 14831 root root /usr/lib/python2.4/site-packages/Bio/MetaTool/__init__.pyc
-rw-r--r-- 11364 root root /usr/lib/python2.4/site-packages/Bio/MetaTool/metatool_format.py
-rw-r--r-- 8135 root root /usr/lib/python2.4/site-packages/Bio/MetaTool/metatool_format.pyc
-rw-r--r-- 6517 root root /usr/lib/python2.4/site-packages/Bio/Mindy/BaseDB.py
-rw-r--r-- 6509 root root /usr/lib/python2.4/site-packages/Bio/Mindy/BaseDB.pyc
-rw-r--r-- 6924 root root /usr/lib/python2.4/site-packages/Bio/Mindy/BerkeleyDB.py
-rw-r--r-- 6231 root root /usr/lib/python2.4/site-packages/Bio/Mindy/BerkeleyDB.pyc
-rw-r--r-- 13287 root root /usr/lib/python2.4/site-packages/Bio/Mindy/FlatDB.py
-rw-r--r-- 13962 root root /usr/lib/python2.4/site-packages/Bio/Mindy/FlatDB.pyc
-rw-r--r-- 1353 root root /usr/lib/python2.4/site-packages/Bio/Mindy/Location.py
-rw-r--r-- 1637 root root /usr/lib/python2.4/site-packages/Bio/Mindy/Location.pyc
-rw-r--r-- 5803 root root /usr/lib/python2.4/site-packages/Bio/Mindy/SimpleSeqRecord.py
-rw-r--r-- 6750 root root /usr/lib/python2.4/site-packages/Bio/Mindy/SimpleSeqRecord.pyc
-rw-r--r-- 3764 root root /usr/lib/python2.4/site-packages/Bio/Mindy/XPath.py
-rw-r--r-- 4105 root root /usr/lib/python2.4/site-packages/Bio/Mindy/XPath.pyc
-rw-r--r-- 1068 root root /usr/lib/python2.4/site-packages/Bio/Mindy/__init__.py
-rw-r--r-- 1316 root root /usr/lib/python2.4/site-packages/Bio/Mindy/__init__.pyc
-rw-r--r-- 722 root root /usr/lib/python2.4/site-packages/Bio/Mindy/compression.py
-rw-r--r-- 976 root root /usr/lib/python2.4/site-packages/Bio/Mindy/compression.pyc
-rw-r--r-- 2524 root root /usr/lib/python2.4/site-packages/Bio/MultiProc/Scheduler.py
-rw-r--r-- 2606 root root /usr/lib/python2.4/site-packages/Bio/MultiProc/Scheduler.pyc
-rw-r--r-- 2723 root root /usr/lib/python2.4/site-packages/Bio/MultiProc/Task.py
-rw-r--r-- 3167 root root /usr/lib/python2.4/site-packages/Bio/MultiProc/Task.pyc
-rw-r--r-- 1905 root root /usr/lib/python2.4/site-packages/Bio/MultiProc/__init__.py
-rw-r--r-- 1661 root root /usr/lib/python2.4/site-packages/Bio/MultiProc/__init__.pyc
-rw-r--r-- 9839 root root /usr/lib/python2.4/site-packages/Bio/MultiProc/copen.py
-rw-r--r-- 9745 root root /usr/lib/python2.4/site-packages/Bio/MultiProc/copen.pyc
-rw-r--r-- 1870 root root /usr/lib/python2.4/site-packages/Bio/NBRF/Record.py
-rw-r--r-- 1995 root root /usr/lib/python2.4/site-packages/Bio/NBRF/Record.pyc
-rw-r--r-- 213 root root /usr/lib/python2.4/site-packages/Bio/NBRF/ValSeq.py
-rw-r--r-- 427 root root /usr/lib/python2.4/site-packages/Bio/NBRF/ValSeq.pyc
-rw-r--r-- 5057 root root /usr/lib/python2.4/site-packages/Bio/NBRF/__init__.py
-rw-r--r-- 6056 root root /usr/lib/python2.4/site-packages/Bio/NBRF/__init__.pyc
-rw-r--r-- 1874 root root /usr/lib/python2.4/site-packages/Bio/NBRF/nbrf_format.py
-rw-r--r-- 1793 root root /usr/lib/python2.4/site-packages/Bio/NBRF/nbrf_format.pyc
-rw-r--r-- 2727 root root /usr/lib/python2.4/site-packages/Bio/NMR/NOEtools.py
-rw-r--r-- 1766 root root /usr/lib/python2.4/site-packages/Bio/NMR/NOEtools.pyc
-rw-r--r-- 156 root root /usr/lib/python2.4/site-packages/Bio/NMR/__init__.py
-rw-r--r-- 304 root root /usr/lib/python2.4/site-packages/Bio/NMR/__init__.pyc
-rw-r--r-- 7602 root root /usr/lib/python2.4/site-packages/Bio/NMR/xpktools.py
-rw-r--r-- 5364 root root /usr/lib/python2.4/site-packages/Bio/NMR/xpktools.pyc
-rw-r--r-- 9507 root root /usr/lib/python2.4/site-packages/Bio/Ndb/__init__.py
-rw-r--r-- 9250 root root /usr/lib/python2.4/site-packages/Bio/Ndb/__init__.pyc
drwxr-xr-x 4096 root root /usr/lib/python2.4/site-packages/Bio/NeuralNetwork/BackPropagation
drwxr-xr-x 4096 root root /usr/lib/python2.4/site-packages/Bio/NeuralNetwork/Gene
-rw-r--r-- 2857 root root /usr/lib/python2.4/site-packages/Bio/NeuralNetwork/StopTraining.py
-rw-r--r-- 2862 root root /usr/lib/python2.4/site-packages/Bio/NeuralNetwork/StopTraining.pyc
-rw-r--r-- 3027 root root /usr/lib/python2.4/site-packages/Bio/NeuralNetwork/Training.py
-rw-r--r-- 3175 root root /usr/lib/python2.4/site-packages/Bio/NeuralNetwork/Training.pyc
-rw-r--r-- 47 root root /usr/lib/python2.4/site-packages/Bio/NeuralNetwork/__init__.py
-rw-r--r-- 142 root root /usr/lib/python2.4/site-packages/Bio/NeuralNetwork/__init__.pyc
-rw-r--r-- 10996 root root /usr/lib/python2.4/site-packages/Bio/NeuralNetwork/BackPropagation/Layer.py
-rw-r--r-- 9217 root root /usr/lib/python2.4/site-packages/Bio/NeuralNetwork/BackPropagation/Layer.pyc
-rw-r--r-- 4128 root root /usr/lib/python2.4/site-packages/Bio/NeuralNetwork/BackPropagation/Network.py
-rw-r--r-- 3640 root root /usr/lib/python2.4/site-packages/Bio/NeuralNetwork/BackPropagation/Network.pyc
-rw-r--r-- 47 root root /usr/lib/python2.4/site-packages/Bio/NeuralNetwork/BackPropagation/__init__.py
-rw-r--r-- 158 root root /usr/lib/python2.4/site-packages/Bio/NeuralNetwork/BackPropagation/__init__.pyc
-rw-r--r-- 8212 root root /usr/lib/python2.4/site-packages/Bio/NeuralNetwork/Gene/Motif.py
-rw-r--r-- 6797 root root /usr/lib/python2.4/site-packages/Bio/NeuralNetwork/Gene/Motif.pyc
-rw-r--r-- 9040 root root /usr/lib/python2.4/site-packages/Bio/NeuralNetwork/Gene/Pattern.py
-rw-r--r-- 8505 root root /usr/lib/python2.4/site-packages/Bio/NeuralNetwork/Gene/Pattern.pyc
-rw-r--r-- 26136 root root /usr/lib/python2.4/site-packages/Bio/NeuralNetwork/Gene/Schema.py
-rw-r--r-- 23604 root root /usr/lib/python2.4/site-packages/Bio/NeuralNetwork/Gene/Schema.pyc
-rw-r--r-- 8944 root root /usr/lib/python2.4/site-packages/Bio/NeuralNetwork/Gene/Signature.py
-rw-r--r-- 6824 root root /usr/lib/python2.4/site-packages/Bio/NeuralNetwork/Gene/Signature.pyc
-rw-r--r-- 47 root root /usr/lib/python2.4/site-packages/Bio/NeuralNetwork/Gene/__init__.py
-rw-r--r-- 147 root root /usr/lib/python2.4/site-packages/Bio/NeuralNetwork/Gene/__init__.pyc
-rw-r--r-- 68308 root root /usr/lib/python2.4/site-packages/Bio/Nexus/Nexus.py
-rw-r--r-- 52770 root root /usr/lib/python2.4/site-packages/Bio/Nexus/Nexus.pyc
-rw-r--r-- 5743 root root /usr/lib/python2.4/site-packages/Bio/Nexus/Nodes.py
-rw-r--r-- 6542 root root /usr/lib/python2.4/site-packages/Bio/Nexus/Nodes.pyc
-rw-r--r-- 28931 root root /usr/lib/python2.4/site-packages/Bio/Nexus/Trees.py
-rw-r--r-- 22028 root root /usr/lib/python2.4/site-packages/Bio/Nexus/Trees.pyc
-rw-r--r-- 6 root root /usr/lib/python2.4/site-packages/Bio/Nexus/__init__.py
-rw-r--r-- 134 root root /usr/lib/python2.4/site-packages/Bio/Nexus/__init__.pyc
-rwxr-xr-x 4164 root root /usr/lib/python2.4/site-packages/Bio/Nexus/cnexus.so
-rw-r--r-- 3105 root root /usr/lib/python2.4/site-packages/Bio/PDB/AbstractPropertyMap.py
-rw-r--r-- 3957 root root /usr/lib/python2.4/site-packages/Bio/PDB/AbstractPropertyMap.pyc
-rw-r--r-- 8218 root root /usr/lib/python2.4/site-packages/Bio/PDB/Atom.py
-rw-r--r-- 9869 root root /usr/lib/python2.4/site-packages/Bio/PDB/Atom.pyc
-rw-r--r-- 3724 root root /usr/lib/python2.4/site-packages/Bio/PDB/Chain.py
-rw-r--r-- 4203 root root /usr/lib/python2.4/site-packages/Bio/PDB/Chain.pyc
-rw-r--r-- 5494 root root /usr/lib/python2.4/site-packages/Bio/PDB/DSSP.py
-rw-r--r-- 5649 root root /usr/lib/python2.4/site-packages/Bio/PDB/DSSP.pyc
-rw-r--r-- 1450 root root /usr/lib/python2.4/site-packages/Bio/PDB/Dice.py
-rw-r--r-- 2396 root root /usr/lib/python2.4/site-packages/Bio/PDB/Dice.pyc
-rw-r--r-- 6682 root root /usr/lib/python2.4/site-packages/Bio/PDB/Entity.py
-rw-r--r-- 8252 root root /usr/lib/python2.4/site-packages/Bio/PDB/Entity.pyc
-rw-r--r-- 8469 root root /usr/lib/python2.4/site-packages/Bio/PDB/FragmentMapper.py
-rw-r--r-- 9245 root root /usr/lib/python2.4/site-packages/Bio/PDB/FragmentMapper.pyc
-rw-r--r-- 10938 root root /usr/lib/python2.4/site-packages/Bio/PDB/HSExposure.py
-rw-r--r-- 10313 root root /usr/lib/python2.4/site-packages/Bio/PDB/HSExposure.pyc
-rw-r--r-- 4641 root root /usr/lib/python2.4/site-packages/Bio/PDB/MMCIF2Dict.py
-rw-r--r-- 3185 root root /usr/lib/python2.4/site-packages/Bio/PDB/MMCIF2Dict.pyc
-rw-r--r-- 5530 root root /usr/lib/python2.4/site-packages/Bio/PDB/MMCIFParser.py
-rw-r--r-- 4870 root root /usr/lib/python2.4/site-packages/Bio/PDB/MMCIFParser.pyc
-rw-r--r-- 1756 root root /usr/lib/python2.4/site-packages/Bio/PDB/Model.py
-rw-r--r-- 2272 root root /usr/lib/python2.4/site-packages/Bio/PDB/Model.pyc
-rw-r--r-- 6568 root root /usr/lib/python2.4/site-packages/Bio/PDB/NACCESS.py
-rw-r--r-- 5928 root root /usr/lib/python2.4/site-packages/Bio/PDB/NACCESS.pyc
-rw-r--r-- 4347 root root /usr/lib/python2.4/site-packages/Bio/PDB/NeighborSearch.py
-rw-r--r-- 4773 root root /usr/lib/python2.4/site-packages/Bio/PDB/NeighborSearch.pyc
-rw-r--r-- 455 root root /usr/lib/python2.4/site-packages/Bio/PDB/PDBExceptions.py
-rw-r--r-- 280 root root /usr/lib/python2.4/site-packages/Bio/PDB/PDBExceptions.pyc
-rw-r--r-- 5350 root root /usr/lib/python2.4/site-packages/Bio/PDB/PDBIO.py
-rw-r--r-- 5450 root root /usr/lib/python2.4/site-packages/Bio/PDB/PDBIO.pyc
-rw-r--r-- 9687 root root /usr/lib/python2.4/site-packages/Bio/PDB/PDBList.py
-rw-r--r-- 8353 root root /usr/lib/python2.4/site-packages/Bio/PDB/PDBList.pyc
-rw-r--r-- 10737 root root /usr/lib/python2.4/site-packages/Bio/PDB/PDBParser.py
-rw-r--r-- 7573 root root /usr/lib/python2.4/site-packages/Bio/PDB/PDBParser.pyc
-rw-r--r-- 10696 root root /usr/lib/python2.4/site-packages/Bio/PDB/Polypeptide.py
-rw-r--r-- 11649 root root /usr/lib/python2.4/site-packages/Bio/PDB/Polypeptide.pyc
-rw-r--r-- 4886 root root /usr/lib/python2.4/site-packages/Bio/PDB/Residue.py
-rw-r--r-- 5398 root root /usr/lib/python2.4/site-packages/Bio/PDB/Residue.pyc
-rw-r--r-- 4270 root root /usr/lib/python2.4/site-packages/Bio/PDB/ResidueDepth.py
-rw-r--r-- 4763 root root /usr/lib/python2.4/site-packages/Bio/PDB/ResidueDepth.pyc
-rw-r--r-- 2183 root root /usr/lib/python2.4/site-packages/Bio/PDB/Selection.py
-rw-r--r-- 2165 root root /usr/lib/python2.4/site-packages/Bio/PDB/Selection.pyc
-rw-r--r-- 1395 root root /usr/lib/python2.4/site-packages/Bio/PDB/Structure.py
-rw-r--r-- 1847 root root /usr/lib/python2.4/site-packages/Bio/PDB/Structure.pyc
-rw-r--r-- 3449 root root /usr/lib/python2.4/site-packages/Bio/PDB/StructureAlignment.py
-rw-r--r-- 3333 root root /usr/lib/python2.4/site-packages/Bio/PDB/StructureAlignment.pyc
-rw-r--r-- 9881 root root /usr/lib/python2.4/site-packages/Bio/PDB/StructureBuilder.py
-rw-r--r-- 7169 root root /usr/lib/python2.4/site-packages/Bio/PDB/StructureBuilder.pyc
-rw-r--r-- 2150 root root /usr/lib/python2.4/site-packages/Bio/PDB/Superimposer.py
-rw-r--r-- 2875 root root /usr/lib/python2.4/site-packages/Bio/PDB/Superimposer.pyc
-rw-r--r-- 8949 root root /usr/lib/python2.4/site-packages/Bio/PDB/Vector.py
-rw-r--r-- 11253 root root /usr/lib/python2.4/site-packages/Bio/PDB/Vector.pyc
-rw-r--r-- 1902 root root /usr/lib/python2.4/site-packages/Bio/PDB/__init__.py
-rw-r--r-- 2137 root root /usr/lib/python2.4/site-packages/Bio/PDB/__init__.pyc
-rw-r--r-- 8975 root root /usr/lib/python2.4/site-packages/Bio/PDB/parse_pdb_header.py
-rw-r--r-- 6938 root root /usr/lib/python2.4/site-packages/Bio/PDB/parse_pdb_header.pyc
-rw-r--r-- 69 root root /usr/lib/python2.4/site-packages/Bio/Parsers/__init__.py
-rw-r--r-- 221 root root /usr/lib/python2.4/site-packages/Bio/Parsers/__init__.pyc
-rw-r--r-- 14285 root root /usr/lib/python2.4/site-packages/Bio/Parsers/spark.py
-rw-r--r-- 14121 root root /usr/lib/python2.4/site-packages/Bio/Parsers/spark.pyc
drwxr-xr-x 4096 root root /usr/lib/python2.4/site-packages/Bio/Pathway/Rep
-rw-r--r-- 10801 root root /usr/lib/python2.4/site-packages/Bio/Pathway/__init__.py
-rw-r--r-- 12023 root root /usr/lib/python2.4/site-packages/Bio/Pathway/__init__.pyc
-rw-r--r-- 6168 root root /usr/lib/python2.4/site-packages/Bio/Pathway/Rep/Graph.py
-rw-r--r-- 6124 root root /usr/lib/python2.4/site-packages/Bio/Pathway/Rep/Graph.pyc
-rw-r--r-- 2996 root root /usr/lib/python2.4/site-packages/Bio/Pathway/Rep/HashSet.py
-rw-r--r-- 4177 root root /usr/lib/python2.4/site-packages/Bio/Pathway/Rep/HashSet.pyc
-rw-r--r-- 7057 root root /usr/lib/python2.4/site-packages/Bio/Pathway/Rep/MultiGraph.py
-rw-r--r-- 7263 root root /usr/lib/python2.4/site-packages/Bio/Pathway/Rep/MultiGraph.pyc
-rw-r--r-- 336 root root /usr/lib/python2.4/site-packages/Bio/Pathway/Rep/__init__.py
-rw-r--r-- 433 root root /usr/lib/python2.4/site-packages/Bio/Pathway/Rep/__init__.pyc
-rw-r--r-- 16670 root root /usr/lib/python2.4/site-packages/Bio/Prosite/Pattern.py
-rw-r--r-- 13593 root root /usr/lib/python2.4/site-packages/Bio/Prosite/Pattern.pyc
-rw-r--r-- 14245 root root /usr/lib/python2.4/site-packages/Bio/Prosite/Prodoc.py
-rw-r--r-- 16607 root root /usr/lib/python2.4/site-packages/Bio/Prosite/Prodoc.pyc
-rw-r--r-- 28548 root root /usr/lib/python2.4/site-packages/Bio/Prosite/__init__.py
-rw-r--r-- 28877 root root /usr/lib/python2.4/site-packages/Bio/Prosite/__init__.pyc
-rw-r--r-- 13770 root root /usr/lib/python2.4/site-packages/Bio/Rebase/__init__.py
-rw-r--r-- 16474 root root /usr/lib/python2.4/site-packages/Bio/Rebase/__init__.pyc
-rwxr-xr-x 6184 root root /usr/lib/python2.4/site-packages/Bio/Restriction/DNAUtils.so
-rw-r--r-- 13562 root root /usr/lib/python2.4/site-packages/Bio/Restriction/PrintFormat.py
-rw-r--r-- 11677 root root /usr/lib/python2.4/site-packages/Bio/Restriction/PrintFormat.pyc
-rw-r--r-- 3254 root root /usr/lib/python2.4/site-packages/Bio/Restriction/RanaConfig.py
-rw-r--r-- 625 root root /usr/lib/python2.4/site-packages/Bio/Restriction/RanaConfig.pyc
-rw-r--r-- 81089 root root /usr/lib/python2.4/site-packages/Bio/Restriction/Restriction.py
-rw-r--r-- 79706 root root /usr/lib/python2.4/site-packages/Bio/Restriction/Restriction.pyc
-rw-r--r--408994 root root /usr/lib/python2.4/site-packages/Bio/Restriction/Restriction_Dictionary.py
-rw-r--r--175618 root root /usr/lib/python2.4/site-packages/Bio/Restriction/Restriction_Dictionary.pyc
drwxr-xr-x 4096 root root /usr/lib/python2.4/site-packages/Bio/Restriction/_Update
-rw-r--r-- 8730 root root /usr/lib/python2.4/site-packages/Bio/Restriction/__init__.py
-rw-r--r-- 2764 root root /usr/lib/python2.4/site-packages/Bio/Restriction/__init__.pyc
-rw-r--r-- 35237 root root /usr/lib/python2.4/site-packages/Bio/Restriction/_Update/RestrictionCompiler.py
-rw-r--r-- 23967 root root /usr/lib/python2.4/site-packages/Bio/Restriction/_Update/RestrictionCompiler.pyc
-rw-r--r-- 3491 root root /usr/lib/python2.4/site-packages/Bio/Restriction/_Update/Update.py
-rw-r--r-- 4331 root root /usr/lib/python2.4/site-packages/Bio/Restriction/_Update/Update.pyc
-rw-r--r-- 0 root root /usr/lib/python2.4/site-packages/Bio/Restriction/_Update/__init__.py
-rw-r--r-- 148 root root /usr/lib/python2.4/site-packages/Bio/Restriction/_Update/__init__.pyc
-rw-r--r-- 3825 root root /usr/lib/python2.4/site-packages/Bio/SCOP/Cla.py
-rw-r--r-- 4646 root root /usr/lib/python2.4/site-packages/Bio/SCOP/Cla.pyc
-rw-r--r-- 3693 root root /usr/lib/python2.4/site-packages/Bio/SCOP/Des.py
-rw-r--r-- 3869 root root /usr/lib/python2.4/site-packages/Bio/SCOP/Des.pyc
-rw-r--r-- 2951 root root /usr/lib/python2.4/site-packages/Bio/SCOP/Dom.py
-rw-r--r-- 3150 root root /usr/lib/python2.4/site-packages/Bio/SCOP/Dom.pyc
-rw-r--r-- 2100 root root /usr/lib/python2.4/site-packages/Bio/SCOP/FileIndex.py
-rw-r--r-- 2212 root root /usr/lib/python2.4/site-packages/Bio/SCOP/FileIndex.pyc
-rw-r--r-- 3594 root root /usr/lib/python2.4/site-packages/Bio/SCOP/Hie.py
-rw-r--r-- 3729 root root /usr/lib/python2.4/site-packages/Bio/SCOP/Hie.pyc
-rw-r--r-- 12477 root root /usr/lib/python2.4/site-packages/Bio/SCOP/Raf.py
-rw-r--r-- 13640 root root /usr/lib/python2.4/site-packages/Bio/SCOP/Raf.pyc
-rw-r--r-- 2931 root root /usr/lib/python2.4/site-packages/Bio/SCOP/Residues.py
-rw-r--r-- 2751 root root /usr/lib/python2.4/site-packages/Bio/SCOP/Residues.pyc
-rw-r--r-- 31259 root root /usr/lib/python2.4/site-packages/Bio/SCOP/__init__.py
-rw-r--r-- 27791 root root /usr/lib/python2.4/site-packages/Bio/SCOP/__init__.pyc
-rw-r--r-- 5054 root root /usr/lib/python2.4/site-packages/Bio/SVDSuperimposer/SVDSuperimposer.py
-rw-r--r-- 5227 root root /usr/lib/python2.4/site-packages/Bio/SVDSuperimposer/SVDSuperimposer.pyc
-rw-r--r-- 294 root root /usr/lib/python2.4/site-packages/Bio/SVDSuperimposer/__init__.py
-rw-r--r-- 463 root root /usr/lib/python2.4/site-packages/Bio/SVDSuperimposer/__init__.pyc
-rw-r--r-- 1815 root root /usr/lib/python2.4/site-packages/Bio/Saf/Record.py
-rw-r--r-- 1961 root root /usr/lib/python2.4/site-packages/Bio/Saf/Record.pyc
-rw-r--r-- 6172 root root /usr/lib/python2.4/site-packages/Bio/Saf/__init__.py
-rw-r--r-- 7244 root root /usr/lib/python2.4/site-packages/Bio/Saf/__init__.pyc
-rw-r--r-- 2399 root root /usr/lib/python2.4/site-packages/Bio/Saf/saf_format.py
-rw-r--r-- 1957 root root /usr/lib/python2.4/site-packages/Bio/Saf/saf_format.pyc
-rw-r--r-- 2537 root root /usr/lib/python2.4/site-packages/Bio/SeqIO/FASTA.py
-rw-r--r-- 2854 root root /usr/lib/python2.4/site-packages/Bio/SeqIO/FASTA.pyc
-rw-r--r-- 414 root root /usr/lib/python2.4/site-packages/Bio/SeqIO/__init__.py
-rw-r--r-- 564 root root /usr/lib/python2.4/site-packages/Bio/SeqIO/__init__.pyc
-rw-r--r-- 14987 root root /usr/lib/python2.4/site-packages/Bio/SeqIO/generic.py
-rw-r--r-- 15183 root root /usr/lib/python2.4/site-packages/Bio/SeqIO/generic.pyc
-rw-r--r-- 5132 root root /usr/lib/python2.4/site-packages/Bio/SeqUtils/CodonUsage.py
-rw-r--r-- 5527 root root /usr/lib/python2.4/site-packages/Bio/SeqUtils/CodonUsage.pyc
-rw-r--r-- 910 root root /usr/lib/python2.4/site-packages/Bio/SeqUtils/CodonUsageIndices.py
-rw-r--r-- 1847 root root /usr/lib/python2.4/site-packages/Bio/SeqUtils/CodonUsageIndices.pyc
-rw-r--r-- 4297 root root /usr/lib/python2.4/site-packages/Bio/SeqUtils/IsoelectricPoint.py
-rw-r--r-- 3728 root root /usr/lib/python2.4/site-packages/Bio/SeqUtils/IsoelectricPoint.pyc
-rw-r--r-- 5432 root root /usr/lib/python2.4/site-packages/Bio/SeqUtils/MeltingTemp.py
-rw-r--r-- 4623 root root /usr/lib/python2.4/site-packages/Bio/SeqUtils/MeltingTemp.pyc
-rw-r--r-- 9948 root root /usr/lib/python2.4/site-packages/Bio/SeqUtils/ProtParam.py
-rw-r--r-- 8359 root root /usr/lib/python2.4/site-packages/Bio/SeqUtils/ProtParam.pyc
-rw-r--r-- 6328 root root /usr/lib/python2.4/site-packages/Bio/SeqUtils/ProtParamData.py
-rw-r--r-- 6706 root root /usr/lib/python2.4/site-packages/Bio/SeqUtils/ProtParamData.pyc
-rw-r--r-- 13452 root root /usr/lib/python2.4/site-packages/Bio/SeqUtils/__init__.py
-rw-r--r-- 14522 root root /usr/lib/python2.4/site-packages/Bio/SeqUtils/__init__.pyc
-rw-r--r-- 20387 root root /usr/lib/python2.4/site-packages/Bio/Sequencing/Ace.py
-rw-r--r-- 20948 root root /usr/lib/python2.4/site-packages/Bio/Sequencing/Ace.pyc
-rw-r--r-- 6993 root root /usr/lib/python2.4/site-packages/Bio/Sequencing/Phd.py
-rw-r--r-- 9372 root root /usr/lib/python2.4/site-packages/Bio/Sequencing/Phd.pyc
-rw-r--r-- 241 root root /usr/lib/python2.4/site-packages/Bio/Sequencing/__init__.py
-rw-r--r-- 396 root root /usr/lib/python2.4/site-packages/Bio/Sequencing/__init__.pyc
-rw-r--r-- 27 root root /usr/lib/python2.4/site-packages/Bio/Statistics/__init__.py
-rw-r--r-- 139 root root /usr/lib/python2.4/site-packages/Bio/Statistics/__init__.pyc
-rw-r--r-- 2307 root root /usr/lib/python2.4/site-packages/Bio/Statistics/lowess.py
-rw-r--r-- 2615 root root /usr/lib/python2.4/site-packages/Bio/Statistics/lowess.pyc
-rw-r--r-- 2750 root root /usr/lib/python2.4/site-packages/Bio/SubsMat/FreqTable.py
-rw-r--r-- 2039 root root /usr/lib/python2.4/site-packages/Bio/SubsMat/FreqTable.pyc
-rw-r--r--175320 root root /usr/lib/python2.4/site-packages/Bio/SubsMat/MatrixInfo.py
-rw-r--r--157713 root root /usr/lib/python2.4/site-packages/Bio/SubsMat/MatrixInfo.pyc
-rw-r--r-- 22572 root root /usr/lib/python2.4/site-packages/Bio/SubsMat/__init__.py
-rw-r--r-- 14015 root root /usr/lib/python2.4/site-packages/Bio/SubsMat/__init__.pyc
-rw-r--r-- 4615 root root /usr/lib/python2.4/site-packages/Bio/SwissProt/KeyWList.py
-rw-r--r-- 4661 root root /usr/lib/python2.4/site-packages/Bio/SwissProt/KeyWList.pyc
-rw-r--r-- 35589 root root /usr/lib/python2.4/site-packages/Bio/SwissProt/SProt.py
-rw-r--r-- 32337 root root /usr/lib/python2.4/site-packages/Bio/SwissProt/SProt.pyc
-rw-r--r-- 286 root root /usr/lib/python2.4/site-packages/Bio/SwissProt/__init__.py
-rw-r--r-- 215 root root /usr/lib/python2.4/site-packages/Bio/SwissProt/__init__.pyc
-rw-r--r-- 6426 root root /usr/lib/python2.4/site-packages/Bio/UniGene/__init__.py
-rw-r--r-- 6324 root root /usr/lib/python2.4/site-packages/Bio/UniGene/__init__.pyc
-rw-r--r-- 4304 root root /usr/lib/python2.4/site-packages/Bio/WWW/ExPASy.py
-rw-r--r-- 4475 root root /usr/lib/python2.4/site-packages/Bio/WWW/ExPASy.pyc
-rw-r--r-- 643 root root /usr/lib/python2.4/site-packages/Bio/WWW/InterPro.py
-rw-r--r-- 652 root root /usr/lib/python2.4/site-packages/Bio/WWW/InterPro.pyc
-rw-r--r-- 7604 root root /usr/lib/python2.4/site-packages/Bio/WWW/NCBI.py
-rw-r--r-- 7373 root root /usr/lib/python2.4/site-packages/Bio/WWW/NCBI.pyc
-rw-r--r-- 2103 root root /usr/lib/python2.4/site-packages/Bio/WWW/SCOP.py
-rw-r--r-- 2104 root root /usr/lib/python2.4/site-packages/Bio/WWW/SCOP.pyc
-rw-r--r-- 519 root root /usr/lib/python2.4/site-packages/Bio/WWW/__init__.py
-rw-r--r-- 839 root root /usr/lib/python2.4/site-packages/Bio/WWW/__init__.pyc
-rw-r--r-- 3777 root root /usr/lib/python2.4/site-packages/Bio/Wise/__init__.py
-rw-r--r-- 3718 root root /usr/lib/python2.4/site-packages/Bio/Wise/__init__.pyc
-rw-r--r-- 3854 root root /usr/lib/python2.4/site-packages/Bio/Wise/dnal.py
-rw-r--r-- 4756 root root /usr/lib/python2.4/site-packages/Bio/Wise/dnal.pyc
-rw-r--r-- 3267 root root /usr/lib/python2.4/site-packages/Bio/Wise/psw.py
-rw-r--r-- 4636 root root /usr/lib/python2.4/site-packages/Bio/Wise/psw.pyc
drwxr-xr-x 4096 root root /usr/lib/python2.4/site-packages/Bio/builders/Search
drwxr-xr-x 4096 root root /usr/lib/python2.4/site-packages/Bio/builders/SeqRecord
-rw-r--r-- 27 root root /usr/lib/python2.4/site-packages/Bio/builders/__init__.py
-rw-r--r-- 137 root root /usr/lib/python2.4/site-packages/Bio/builders/__init__.pyc
-rw-r--r-- 27 root root /usr/lib/python2.4/site-packages/Bio/builders/Search/__init__.py
-rw-r--r-- 144 root root /usr/lib/python2.4/site-packages/Bio/builders/Search/__init__.pyc
-rw-r--r-- 3394 root root /usr/lib/python2.4/site-packages/Bio/builders/Search/search.py
-rw-r--r-- 3371 root root /usr/lib/python2.4/site-packages/Bio/builders/Search/search.pyc
-rw-r--r-- 0 root root /usr/lib/python2.4/site-packages/Bio/builders/SeqRecord/__init__.py
-rw-r--r-- 147 root root /usr/lib/python2.4/site-packages/Bio/builders/SeqRecord/__init__.pyc
-rw-r--r-- 4197 root root /usr/lib/python2.4/site-packages/Bio/builders/SeqRecord/sequence.py
-rw-r--r-- 4280 root root /usr/lib/python2.4/site-packages/Bio/builders/SeqRecord/sequence.pyc
-rw-r--r-- 22935 root root /usr/lib/python2.4/site-packages/Bio/config/DBRegistry.py
-rw-r--r-- 22802 root root /usr/lib/python2.4/site-packages/Bio/config/DBRegistry.pyc
-rw-r--r-- 13510 root root /usr/lib/python2.4/site-packages/Bio/config/FormatRegistry.py
-rw-r--r-- 11984 root root /usr/lib/python2.4/site-packages/Bio/config/FormatRegistry.pyc
-rw-r--r-- 5339 root root /usr/lib/python2.4/site-packages/Bio/config/Registry.py
-rw-r--r-- 6063 root root /usr/lib/python2.4/site-packages/Bio/config/Registry.pyc
-rw-r--r-- 9535 root root /usr/lib/python2.4/site-packages/Bio/config/SeqDBRegistry.py
-rw-r--r-- 7253 root root /usr/lib/python2.4/site-packages/Bio/config/SeqDBRegistry.pyc
-rw-r--r-- 225 root root /usr/lib/python2.4/site-packages/Bio/config/__init__.py
-rw-r--r-- 135 root root /usr/lib/python2.4/site-packages/Bio/config/__init__.pyc
-rw-r--r-- 1405 root root /usr/lib/python2.4/site-packages/Bio/config/_stanzaformat.py
-rw-r--r-- 1973 root root /usr/lib/python2.4/site-packages/Bio/config/_stanzaformat.pyc
-rw-r--r-- 5615 root root /usr/lib/python2.4/site-packages/Bio/config/_support.py
-rw-r--r-- 5829 root root /usr/lib/python2.4/site-packages/Bio/config/_support.pyc
-rw-r--r-- 225 root root /usr/lib/python2.4/site-packages/Bio/dbdefs/__init__.py
-rw-r--r-- 135 root root /usr/lib/python2.4/site-packages/Bio/dbdefs/__init__.pyc
-rw-r--r-- 591 root root /usr/lib/python2.4/site-packages/Bio/dbdefs/_support.py
-rw-r--r-- 767 root root /usr/lib/python2.4/site-packages/Bio/dbdefs/_support.pyc
-rw-r--r-- 1851 root root /usr/lib/python2.4/site-packages/Bio/dbdefs/embl.py
-rw-r--r-- 1680 root root /usr/lib/python2.4/site-packages/Bio/dbdefs/embl.pyc
-rw-r--r-- 1090 root root /usr/lib/python2.4/site-packages/Bio/dbdefs/fasta.py
-rw-r--r-- 1330 root root /usr/lib/python2.4/site-packages/Bio/dbdefs/fasta.pyc
-rw-r--r-- 1911 root root /usr/lib/python2.4/site-packages/Bio/dbdefs/genbank.py
-rw-r--r-- 1727 root root /usr/lib/python2.4/site-packages/Bio/dbdefs/genbank.pyc
-rw-r--r-- 729 root root /usr/lib/python2.4/site-packages/Bio/dbdefs/interpro.py
-rw-r--r-- 665 root root /usr/lib/python2.4/site-packages/Bio/dbdefs/interpro.pyc
-rw-r--r-- 1051 root root /usr/lib/python2.4/site-packages/Bio/dbdefs/medline.py
-rw-r--r-- 1294 root root /usr/lib/python2.4/site-packages/Bio/dbdefs/medline.pyc
-rw-r--r-- 1473 root root /usr/lib/python2.4/site-packages/Bio/dbdefs/pdb.py
-rw-r--r-- 1154 root root /usr/lib/python2.4/site-packages/Bio/dbdefs/pdb.pyc
-rw-r--r-- 589 root root /usr/lib/python2.4/site-packages/Bio/dbdefs/prodoc.py
-rw-r--r-- 586 root root /usr/lib/python2.4/site-packages/Bio/dbdefs/prodoc.pyc
-rw-r--r-- 723 root root /usr/lib/python2.4/site-packages/Bio/dbdefs/prosite.py
-rw-r--r-- 738 root root /usr/lib/python2.4/site-packages/Bio/dbdefs/prosite.pyc
-rw-r--r-- 1127 root root /usr/lib/python2.4/site-packages/Bio/dbdefs/swissprot.py
-rw-r--r-- 1092 root root /usr/lib/python2.4/site-packages/Bio/dbdefs/swissprot.pyc
-rw-r--r-- 27 root root /usr/lib/python2.4/site-packages/Bio/expressions/__init__.py
-rw-r--r-- 140 root root /usr/lib/python2.4/site-packages/Bio/expressions/__init__.pyc
drwxr-xr-x 4096 root root /usr/lib/python2.4/site-packages/Bio/expressions/blast
-rw-r--r-- 2731 root root /usr/lib/python2.4/site-packages/Bio/expressions/blocks.py
-rw-r--r-- 2362 root root /usr/lib/python2.4/site-packages/Bio/expressions/blocks.pyc
drwxr-xr-x 4096 root root /usr/lib/python2.4/site-packages/Bio/expressions/embl
-rw-r--r-- 3880 root root /usr/lib/python2.4/site-packages/Bio/expressions/fasta.py
-rw-r--r-- 2609 root root /usr/lib/python2.4/site-packages/Bio/expressions/fasta.pyc
-rw-r--r-- 19796 root root /usr/lib/python2.4/site-packages/Bio/expressions/genbank.py
-rw-r--r-- 10119 root root /usr/lib/python2.4/site-packages/Bio/expressions/genbank.pyc
-rw-r--r-- 9058 root root /usr/lib/python2.4/site-packages/Bio/expressions/hmmpfam.py
-rw-r--r-- 3984 root root /usr/lib/python2.4/site-packages/Bio/expressions/hmmpfam.pyc
drwxr-xr-x 4096 root root /usr/lib/python2.4/site-packages/Bio/expressions/swissprot
-rw-r--r-- 2250 root root /usr/lib/python2.4/site-packages/Bio/expressions/transfac.py
-rw-r--r-- 2169 root root /usr/lib/python2.4/site-packages/Bio/expressions/transfac.pyc
-rw-r--r-- 26 root root /usr/lib/python2.4/site-packages/Bio/expressions/blast/__init__.py
-rw-r--r-- 146 root root /usr/lib/python2.4/site-packages/Bio/expressions/blast/__init__.pyc
-rw-r--r-- 17267 root root /usr/lib/python2.4/site-packages/Bio/expressions/blast/ncbiblast.py
-rw-r--r-- 10683 root root /usr/lib/python2.4/site-packages/Bio/expressions/blast/ncbiblast.pyc
-rw-r--r-- 15283 root root /usr/lib/python2.4/site-packages/Bio/expressions/blast/wublast.py
-rw-r--r-- 6658 root root /usr/lib/python2.4/site-packages/Bio/expressions/blast/wublast.pyc
-rw-r--r-- 26 root root /usr/lib/python2.4/site-packages/Bio/expressions/embl/__init__.py
-rw-r--r-- 145 root root /usr/lib/python2.4/site-packages/Bio/expressions/embl/__init__.pyc
-rw-r--r-- 9411 root root /usr/lib/python2.4/site-packages/Bio/expressions/embl/embl65.py
-rw-r--r-- 5473 root root /usr/lib/python2.4/site-packages/Bio/expressions/embl/embl65.pyc
-rw-r--r-- 217 root root /usr/lib/python2.4/site-packages/Bio/expressions/swissprot/__init__.py
-rw-r--r-- 357 root root /usr/lib/python2.4/site-packages/Bio/expressions/swissprot/__init__.pyc
-rw-r--r-- 2308 root root /usr/lib/python2.4/site-packages/Bio/expressions/swissprot/ipi.py
-rw-r--r-- 1660 root root /usr/lib/python2.4/site-packages/Bio/expressions/swissprot/ipi.pyc
-rw-r--r-- 2286 root root /usr/lib/python2.4/site-packages/Bio/expressions/swissprot/speclist.py
-rw-r--r-- 2080 root root /usr/lib/python2.4/site-packages/Bio/expressions/swissprot/speclist.pyc
-rw-r--r-- 12745 root root /usr/lib/python2.4/site-packages/Bio/expressions/swissprot/sprot38.py
-rw-r--r-- 7577 root root /usr/lib/python2.4/site-packages/Bio/expressions/swissprot/sprot38.pyc
-rw-r--r-- 2048 root root /usr/lib/python2.4/site-packages/Bio/expressions/swissprot/sprot40.py
-rw-r--r-- 1656 root root /usr/lib/python2.4/site-packages/Bio/expressions/swissprot/sprot40.pyc
-rw-r--r-- 27 root root /usr/lib/python2.4/site-packages/Bio/formatdefs/__init__.py
-rw-r--r-- 139 root root /usr/lib/python2.4/site-packages/Bio/formatdefs/__init__.pyc
-rw-r--r-- 322 root root /usr/lib/python2.4/site-packages/Bio/formatdefs/embl.py
-rw-r--r-- 552 root root /usr/lib/python2.4/site-packages/Bio/formatdefs/embl.pyc
-rw-r--r-- 674 root root /usr/lib/python2.4/site-packages/Bio/formatdefs/genbank.py
-rw-r--r-- 709 root root /usr/lib/python2.4/site-packages/Bio/formatdefs/genbank.pyc
-rw-r--r-- 2747 root root /usr/lib/python2.4/site-packages/Bio/formatdefs/search.py
-rw-r--r-- 2412 root root /usr/lib/python2.4/site-packages/Bio/formatdefs/search.pyc
-rw-r--r-- 275 root root /usr/lib/python2.4/site-packages/Bio/formatdefs/sequence.py
-rw-r--r-- 471 root root /usr/lib/python2.4/site-packages/Bio/formatdefs/sequence.pyc
-rw-r--r-- 783 root root /usr/lib/python2.4/site-packages/Bio/formatdefs/swissprot.py
-rw-r--r-- 834 root root /usr/lib/python2.4/site-packages/Bio/formatdefs/swissprot.pyc
drwxr-xr-x 4096 root root /usr/lib/python2.4/site-packages/Bio/writers/SeqRecord
-rw-r--r-- 27 root root /usr/lib/python2.4/site-packages/Bio/writers/__init__.py
-rw-r--r-- 136 root root /usr/lib/python2.4/site-packages/Bio/writers/__init__.pyc
-rw-r--r-- 27 root root /usr/lib/python2.4/site-packages/Bio/writers/SeqRecord/__init__.py
-rw-r--r-- 146 root root /usr/lib/python2.4/site-packages/Bio/writers/SeqRecord/__init__.pyc
-rw-r--r-- 2911 root root /usr/lib/python2.4/site-packages/Bio/writers/SeqRecord/embl.py
-rw-r--r-- 2170 root root /usr/lib/python2.4/site-packages/Bio/writers/SeqRecord/embl.pyc
-rw-r--r-- 92 root root /usr/lib/python2.4/site-packages/Bio/writers/SeqRecord/empty.py
-rw-r--r-- 382 root root /usr/lib/python2.4/site-packages/Bio/writers/SeqRecord/empty.pyc
-rw-r--r-- 686 root root /usr/lib/python2.4/site-packages/Bio/writers/SeqRecord/fasta.py
-rw-r--r-- 1122 root root /usr/lib/python2.4/site-packages/Bio/writers/SeqRecord/fasta.pyc
drwxr-xr-x 4096 root root /usr/share/doc/python-Bio-1.42
-rw-r--r-- 1963 root root /usr/share/doc/python-Bio-1.42/CONTRIB
-rw-r--r-- 1064 root root /usr/share/doc/python-Bio-1.42/LICENSE
-rw-r--r-- 15255 root root /usr/share/doc/python-Bio-1.42/NEWS
-rw-r--r-- 5476 root root /usr/share/doc/python-Bio-1.42/README