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Sophie

distrib > Mandriva > 2007.0 > x86_64 > media > contrib-release > by-pkgid > 6a467c083cacdc842b4b2fde57e988e9 > files

perl-bioperl-1.5.1-4mdk.noarch.rpm

Files

-rwxr-xr-x 2846 root root /usr/bin/bp_aacomp.pl
-rwxr-xr-x 15384 root root /usr/bin/bp_biblio.pl
-rwxr-xr-x 8372 root root /usr/bin/bp_biofetch_genbank_proxy.pl
-rwxr-xr-x 3728 root root /usr/bin/bp_bioflat_index.pl
-rwxr-xr-x 1623 root root /usr/bin/bp_biogetseq.pl
-rwxr-xr-x 18362 root root /usr/bin/bp_bulk_load_gff.pl
-rwxr-xr-x 4332 root root /usr/bin/bp_chaos_plot.pl
-rwxr-xr-x 6466 root root /usr/bin/bp_classify_hits_kingdom.pl
-rwxr-xr-x 2707 root root /usr/bin/bp_composite_LD.pl
-rwxr-xr-x 5713 root root /usr/bin/bp_contig_draw.pl
-rwxr-xr-x 2744 root root /usr/bin/bp_dbsplit.pl
-rwxr-xr-x 4261 root root /usr/bin/bp_embl2picture.pl
-rwxr-xr-x 2172 root root /usr/bin/bp_extract_feature_seq.pl
-rwxr-xr-x 14186 root root /usr/bin/bp_fast_load_gff.pl
-rwxr-xr-x 3942 root root /usr/bin/bp_fastam9_to_table.pl
-rwxr-xr-x 12383 root root /usr/bin/bp_feature_draw.pl
-rwxr-xr-x 8308 root root /usr/bin/bp_fetch.pl
-rwxr-xr-x 1813 root root /usr/bin/bp_filter_search.pl
-rwxr-xr-x 9569 root root /usr/bin/bp_flanks.pl
-rwxr-xr-x 23334 root root /usr/bin/bp_frend.pl
-rwxr-xr-x 3132 root root /usr/bin/bp_gccalc.pl
-rwxr-xr-x 10428 root root /usr/bin/bp_genbank2gff.pl
-rwxr-xr-x 11698 root root /usr/bin/bp_genbank2gff3.pl
-rwxr-xr-x 3788 root root /usr/bin/bp_generate_histogram.pl
-rwxr-xr-x 3730 root root /usr/bin/bp_glyphs1-demo.pl
-rwxr-xr-x 3018 root root /usr/bin/bp_glyphs2-demo.pl
-rwxr-xr-x 4804 root root /usr/bin/bp_heterogeneity_test.pl
-rwxr-xr-x 2728 root root /usr/bin/bp_hmmer_to_table.pl
-rwxr-xr-x 5150 root root /usr/bin/bp_index.pl
-rwxr-xr-x 5499 root root /usr/bin/bp_load_gff.pl
-rwxr-xr-x 1698 root root /usr/bin/bp_local_taxonomydb_query.pl
-rwxr-xr-x 3278 root root /usr/bin/bp_make_mrna_protein.pl
-rwxr-xr-x 4928 root root /usr/bin/bp_mask_by_search.pl
-rwxr-xr-x 2301 root root /usr/bin/bp_meta_gff.pl
-rwxr-xr-x 3073 root root /usr/bin/bp_mrtrans.pl
-rwxr-xr-x 4092 root root /usr/bin/bp_mutate.pl
-rwxr-xr-x 894 root root /usr/bin/bp_nexus2nh.pl
-rwxr-xr-x 3562 root root /usr/bin/bp_nrdb.pl
-rwxr-xr-x 6285 root root /usr/bin/bp_oligo_count.pl
-rwxr-xr-x 7156 root root /usr/bin/bp_process_gadfly.pl
-rwxr-xr-x 3809 root root /usr/bin/bp_process_sgd.pl
-rwxr-xr-x 7731 root root /usr/bin/bp_process_wormbase.pl
-rwxr-xr-x 2765 root root /usr/bin/bp_query_entrez_taxa.pl
-rwxr-xr-x 3741 root root /usr/bin/bp_remote_blast.pl
-rwxr-xr-x 2011 root root /usr/bin/bp_search2BSML.pl
-rwxr-xr-x 4222 root root /usr/bin/bp_search2alnblocks.pl
-rwxr-xr-x 6231 root root /usr/bin/bp_search2gff.pl
-rwxr-xr-x 2394 root root /usr/bin/bp_search2table.pl
-rwxr-xr-x 2758 root root /usr/bin/bp_search2tribe.pl
-rwxr-xr-x 4406 root root /usr/bin/bp_search_overview.pl
-rwxr-xr-x 1723 root root /usr/bin/bp_seq_length.pl
-rwxr-xr-x 2190 root root /usr/bin/bp_seqconvert.pl
-rwxr-xr-x 2370 root root /usr/bin/bp_seqret.pl
-rwxr-xr-x 4289 root root /usr/bin/bp_split_seq.pl
-rwxr-xr-x 5652 root root /usr/bin/bp_sreformat.pl
-rwxr-xr-x 1662 root root /usr/bin/bp_taxid4species.pl
-rwxr-xr-x 1448 root root /usr/bin/bp_translate_seq.pl
-rwxr-xr-x 1455 root root /usr/bin/bp_tree2pag.pl
-rwxr-xr-x 7496 root root /usr/bin/bp_unflatten_seq.pl
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio
-rw-r--r-- 9590 root root /usr/lib/perl5/vendor_perl/5.8.8/biodatabases.pod
-rw-r--r-- 18579 root root /usr/lib/perl5/vendor_perl/5.8.8/biodesign.pod
-rw-r--r-- 9755 root root /usr/lib/perl5/vendor_perl/5.8.8/bioperl.pod
-rwxr-xr-x 17325 root root /usr/lib/perl5/vendor_perl/5.8.8/bioscripts.pod
-rw-r--r--171285 root root /usr/lib/perl5/vendor_perl/5.8.8/bptutorial.pl
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Align
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/AlignIO
-rw-r--r-- 14122 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/AlignIO.pm
-rw-r--r-- 22475 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/AnalysisI.pm
-rw-r--r-- 4704 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/AnalysisParserI.pm
-rw-r--r-- 6157 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/AnalysisResultI.pm
-rw-r--r-- 8819 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/AnnotatableI.pm
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Annotation
-rw-r--r-- 6206 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/AnnotationCollectionI.pm
-rw-r--r-- 4431 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/AnnotationI.pm
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Assembly
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Biblio
-rw-r--r-- 10625 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Biblio.pm
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Cluster
-rw-r--r-- 3884 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/ClusterI.pm
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/ClusterIO
-rw-r--r-- 7429 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/ClusterIO.pm
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/CodonUsage
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Coordinate
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/DB
-rw-r--r-- 2597 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/DBLinkContainerI.pm
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Das
-rw-r--r-- 13455 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/DasI.pm
-rw-r--r-- 2732 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/DescribableI.pm
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Event
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Expression
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Factory
-rw-r--r-- 6845 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/FeatureHolderI.pm
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/FeatureIO
-rw-r--r-- 13488 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/FeatureIO.pm
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Graph
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Graphics
-rw-r--r-- 3205 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Graphics.pm
-rw-r--r-- 2386 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/IdCollectionI.pm
-rw-r--r-- 4889 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/IdentifiableI.pm
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Index
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/LiveSeq
-rw-r--r-- 11207 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/LocatableSeq.pm
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Location
-rw-r--r-- 11482 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/LocationI.pm
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Map
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/MapIO
-rw-r--r-- 5042 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/MapIO.pm
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Matrix
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Ontology
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/OntologyIO
-rw-r--r-- 8928 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/OntologyIO.pm
-rw-r--r-- 16648 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Perl.pm
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Phenotype
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/PopGen
-rw-r--r-- 24336 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/PrimarySeq.pm
-rw-r--r-- 22678 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/PrimarySeqI.pm
-rw-r--r-- 8348 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Range.pm
-rw-r--r-- 14670 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/RangeI.pm
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Restriction
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Root
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Search
-rw-r--r-- 5153 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/SearchDist.pm
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/SearchIO
-rw-r--r-- 12859 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/SearchIO.pm
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Seq
-rw-r--r-- 37116 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Seq.pm
-rw-r--r-- 3160 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/SeqAnalysisParserI.pm
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/SeqFeature
-rw-r--r-- 15859 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/SeqFeatureI.pm
-rw-r--r-- 6200 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/SeqI.pm
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/SeqIO
-rw-r--r-- 21447 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/SeqIO.pm
-rw-r--r-- 11050 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/SeqUtils.pm
-rw-r--r-- 57011 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/SimpleAlign.pm
-rw-r--r-- 7451 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/SimpleAnalysisI.pm
-rw-r--r-- 9533 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Species.pm
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Structure
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Symbol
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Taxonomy
-rw-r--r-- 11316 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Taxonomy.pm
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Tools
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Tree
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/TreeIO
-rw-r--r-- 6341 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/TreeIO.pm
-rw-r--r-- 3106 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/UpdateableSeqI.pm
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Variation
-rw-r--r-- 4609 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/WebAgent.pm
-rw-r--r-- 18928 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Align/AlignI.pm
-rw-r--r-- 49691 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Align/DNAStatistics.pm
-rw-r--r-- 4095 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Align/PairwiseStatistics.pm
-rw-r--r-- 8221 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Align/ProteinStatistics.pm
-rw-r--r-- 2348 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Align/StatisticsI.pm
-rw-r--r-- 6314 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Align/Utilities.pm
-rw-r--r-- 6219 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/AlignIO/bl2seq.pm
-rw-r--r-- 8352 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/AlignIO/clustalw.pm
-rw-r--r-- 6404 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/AlignIO/emboss.pm
-rw-r--r-- 5268 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/AlignIO/fasta.pm
-rw-r--r-- 4797 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/AlignIO/largemultifasta.pm
-rwxr-xr-x 3450 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/AlignIO/maf.pm
-rw-r--r-- 2905 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/AlignIO/mase.pm
-rw-r--r-- 5889 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/AlignIO/mega.pm
-rw-r--r-- 5462 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/AlignIO/meme.pm
-rw-r--r-- 5083 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/AlignIO/metafasta.pm
-rw-r--r-- 5698 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/AlignIO/msf.pm
-rw-r--r-- 13469 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/AlignIO/nexus.pm
-rw-r--r-- 3298 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/AlignIO/pfam.pm
-rw-r--r-- 12983 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/AlignIO/phylip.pm
-rw-r--r-- 8537 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/AlignIO/po.pm
-rw-r--r-- 2879 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/AlignIO/prodom.pm
-rw-r--r-- 3549 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/AlignIO/psi.pm
-rw-r--r-- 4248 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/AlignIO/selex.pm
-rw-r--r-- 4669 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/AlignIO/stockholm.pm
-rw-r--r-- 6492 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Annotation/AnnotationFactory.pm
-rw-r--r-- 15042 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Annotation/Collection.pm
-rw-r--r-- 3329 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Annotation/Comment.pm
-rw-r--r-- 9461 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Annotation/DBLink.pm
-rw-r--r-- 12019 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Annotation/OntologyTerm.pm
-rw-r--r-- 9670 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Annotation/Reference.pm
-rw-r--r-- 5465 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Annotation/SimpleValue.pm
-rw-r--r-- 9091 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Annotation/StructuredValue.pm
-rw-r--r-- 3703 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Annotation/Target.pm
-rw-r--r-- 3037 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Annotation/TypeManager.pm
-rw-r--r-- 61150 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Assembly/Contig.pm
-rw-r--r-- 18018 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Assembly/ContigAnalysis.pm
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Assembly/IO
-rw-r--r-- 5119 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Assembly/IO.pm
-rw-r--r-- 14078 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Assembly/Scaffold.pm
-rw-r--r-- 7138 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Assembly/ScaffoldI.pm
-rw-r--r-- 4821 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Assembly/Singlet.pm
-rw-r--r-- 14638 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Assembly/IO/ace.pm
-rw-r--r-- 10919 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Assembly/IO/phrap.pm
-rw-r--r-- 2928 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Biblio/Article.pm
-rw-r--r-- 5091 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Biblio/BiblioBase.pm
-rw-r--r-- 3048 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Biblio/Book.pm
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drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Biblio/IO
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-rw-r--r-- 5713 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Biblio/MedlineArticle.pm
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-rw-r--r-- 2938 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Biblio/Patent.pm
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-rw-r--r-- 6370 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Biblio/Ref.pm
-rw-r--r-- 2748 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Biblio/Service.pm
-rw-r--r-- 2958 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Biblio/TechReport.pm
-rw-r--r-- 2717 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Biblio/Thesis.pm
-rw-r--r-- 2949 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Biblio/WebResource.pm
-rw-r--r-- 19312 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Biblio/IO/medline2ref.pm
-rw-r--r-- 20430 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Biblio/IO/medlinexml.pm
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-rw-r--r-- 4932 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Cluster/ClusterFactory.pm
-rw-r--r-- 3896 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Cluster/FamilyI.pm
-rw-r--r-- 9891 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Cluster/SequenceFamily.pm
-rw-r--r-- 34809 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Cluster/UniGene.pm
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