- Name: sim4
- Version: 20030921
- Release: 4mdv2008.0
- Epoch:
- Group: Sciences/Biology
- License: GPL
- Url: http://globin.cse.psu.edu
- Summary: Program to align cDNA and genomic DNA
- Architecture: x86_64
- Size: 55863
- Distribution: Mandriva Linux
- Vendor: Mandriva
- Packager: Eric Fernandez <zeb@mandriva.org>
Description:
sim4 is a similarity-based tool for aligning an expressed DNA sequence
(EST, cDNA, mRNA) with a genomic sequence for the gene.
It also detects end matches when the two input sequences overlap at one end
(i.e., the start of one sequence overlaps the end of the other)
Reference for Sim4:
L. Florea, G. Hartzell, Z. Zhang, G. Rubin, and W. Miller (1998)
"A computer program for aligning a cDNA sequence with a genomic DNA sequence."
Genome Research 8, 967-974.
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