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<hr><h1>petite.h</h1><div class="fragment"><pre>00001 <font class="comment">//</font>
00002 <font class="comment">// petite.h --- definition of the PetiteList class</font>
00003 <font class="comment">//</font>
00004 <font class="comment">// Copyright (C) 1996 Limit Point Systems, Inc.</font>
00005 <font class="comment">//</font>
00006 <font class="comment">// Author: Edward Seidl &lt;seidl@janed.com&gt;</font>
00007 <font class="comment">// Maintainer: LPS</font>
00008 <font class="comment">//</font>
00009 <font class="comment">// This file is part of the SC Toolkit.</font>
00010 <font class="comment">//</font>
00011 <font class="comment">// The SC Toolkit is free software; you can redistribute it and/or modify</font>
00012 <font class="comment">// it under the terms of the GNU Library General Public License as published by</font>
00013 <font class="comment">// the Free Software Foundation; either version 2, or (at your option)</font>
00014 <font class="comment">// any later version.</font>
00015 <font class="comment">//</font>
00016 <font class="comment">// The SC Toolkit is distributed in the hope that it will be useful,</font>
00017 <font class="comment">// but WITHOUT ANY WARRANTY; without even the implied warranty of</font>
00018 <font class="comment">// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the</font>
00019 <font class="comment">// GNU Library General Public License for more details.</font>
00020 <font class="comment">//</font>
00021 <font class="comment">// You should have received a copy of the GNU Library General Public License</font>
00022 <font class="comment">// along with the SC Toolkit; see the file COPYING.LIB.  If not, write to</font>
00023 <font class="comment">// the Free Software Foundation, 675 Mass Ave, Cambridge, MA 02139, USA.</font>
00024 <font class="comment">//</font>
00025 <font class="comment">// The U.S. Government is granted a limited license as per AL 91-7.</font>
00026 <font class="comment">//</font>
00027 
00028 <font class="preprocessor">#ifndef _chemistry_qc_basis_petite_h</font>
00029 <font class="preprocessor"></font><font class="preprocessor">#define _chemistry_qc_basis_petite_h</font>
00030 <font class="preprocessor"></font>
00031 <font class="preprocessor">#ifdef __GNUC__</font>
00032 <font class="preprocessor"></font><font class="preprocessor">#pragma interface</font>
00033 <font class="preprocessor"></font><font class="preprocessor">#endif</font>
00034 <font class="preprocessor"></font>
00035 <font class="preprocessor">#include &lt;iostream&gt;</font>
00036 
00037 <font class="preprocessor">#include &lt;util/misc/scint.h&gt;</font>
00038 <font class="preprocessor">#include &lt;util/ref/ref.h&gt;</font>
00039 <font class="preprocessor">#include &lt;util/container/array.h&gt;</font>
00040 <font class="preprocessor">#include &lt;math/scmat/blocked.h&gt;</font>
00041 <font class="preprocessor">#include &lt;math/scmat/offset.h&gt;</font>
00042 <font class="preprocessor">#include &lt;chemistry/molecule/molecule.h&gt;</font>
00043 <font class="preprocessor">#include &lt;chemistry/qc/basis/gaussbas.h&gt;</font>
00044 <font class="preprocessor">#include &lt;chemistry/qc/basis/integral.h&gt;</font>
00045 
00046 <font class="comment">// //////////////////////////////////////////////////////////////////////////</font>
00047 
00048 <font class="keyword">namespace </font>sc {
00049 
00050 <font class="keyword">inline</font> sc_int_least64_t
00051 ij_offset64(sc_int_least64_t i, sc_int_least64_t j)<font class="keyword"></font>
00052 <font class="keyword"></font>{
00053   <font class="keywordflow">return</font> (i&gt;j) ? (((i*(i+1)) &gt;&gt; 1) + j) : (((j*(j+1)) &gt;&gt; 1) + i);
00054 }
00055 
00056 <font class="keyword">inline</font> sc_int_least64_t
00057 i_offset64(sc_int_least64_t i)<font class="keyword"></font>
00058 <font class="keyword"></font>{
00059   <font class="keywordflow">return</font> ((i*(i+1)) &gt;&gt; 1);
00060 }
00061 
00062 <font class="comment">// //////////////////////////////////////////////////////////////////////////</font>
00063 
00064 <font class="keyword">struct </font>contribution {
00065     <font class="keywordtype">int</font> bfn;
00066     <font class="keywordtype">double</font> coef;
00067 
00068     contribution();
00069     contribution(<font class="keywordtype">int</font> b, <font class="keywordtype">double</font> c);
00070     ~contribution();
00071 };
00072 
00073 <font class="keyword">struct </font>SO {
00074     <font class="keywordtype">int</font> len;
00075     <font class="keywordtype">int</font> length;
00076     contribution *cont;
00077 
00078     SO();
00079     SO(<font class="keywordtype">int</font>);
00080     ~SO();
00081 
00082     SO&amp; operator=(<font class="keyword">const</font> SO&amp;);
00083     
00084     <font class="keywordtype">void</font> set_length(<font class="keywordtype">int</font>);
00085     <font class="keywordtype">void</font> reset_length(<font class="keywordtype">int</font>);
00086     
00087     <font class="comment">// is this equal to so to within a sign</font>
00088     <font class="keywordtype">int</font> equiv(<font class="keyword">const</font> SO&amp; so);
00089 };
00090 
00091 <font class="keyword">struct </font>SO_block {
00092     <font class="keywordtype">int</font> len;
00093     SO *so;
00094 
00095     SO_block();
00096     SO_block(<font class="keywordtype">int</font>);
00097     ~SO_block();
00098 
00099     <font class="keywordtype">void</font> set_length(<font class="keywordtype">int</font>);
00100     <font class="keywordtype">void</font> reset_length(<font class="keywordtype">int</font>);
00101 
00102     <font class="keywordtype">int</font> add(SO&amp; s, <font class="keywordtype">int</font> i);
00103     <font class="keywordtype">void</font> print(<font class="keyword">const</font> <font class="keywordtype">char</font> *title);
00104 };
00105 
00106 <font class="comment">// //////////////////////////////////////////////////////////////////////////</font>
00107 <font class="comment">// this should only be used from within a SymmGaussianBasisSet</font>
00108 
00109 <font class="keyword">class </font>PetiteList : <font class="keyword">public</font> RefCount {
00110   <font class="keyword">private</font>:
00111     <font class="keywordtype">int</font> natom_;
00112     <font class="keywordtype">int</font> nshell_;
00113     <font class="keywordtype">int</font> ng_;
00114     <font class="keywordtype">int</font> nirrep_;
00115     <font class="keywordtype">int</font> nblocks_;
00116     <font class="keywordtype">int</font> c1_;
00117 
00118     Ref&lt;GaussianBasisSet&gt; gbs_;
00119     Ref&lt;Integral&gt; ints_;
00120     
00121     <font class="keywordtype">char</font> *p1_;        <font class="comment">// p1[n] is 1 if shell n is in the group P1</font>
00122     <font class="keywordtype">int</font> **atom_map_;  <font class="comment">// atom_map[n][g] is the atom that symop g maps atom n</font>
00123                       <font class="comment">// into</font>
00124     <font class="keywordtype">int</font> **shell_map_; <font class="comment">// shell_map[n][g] is the shell that symop g maps shell n</font>
00125                       <font class="comment">// into</font>
00126     <font class="keywordtype">char</font> *lamij_;     <font class="comment">// see Dupuis &amp; King, IJQC 11,613,(1977)</font>
00127 
00128     <font class="keywordtype">int</font> *nbf_in_ir_;
00129 
00130     <font class="keywordtype">void</font> init();
00131 
00132   <font class="keyword">public</font>:
00133     PetiteList(<font class="keyword">const</font> Ref&lt;GaussianBasisSet&gt;&amp;, <font class="keyword">const</font> Ref&lt;Integral&gt;&amp;);
00134     ~PetiteList();
00135 
00136     <font class="keywordtype">int</font> nirrep()<font class="keyword"> const </font>{ <font class="keywordflow">return</font> nirrep_; }
00137     <font class="keywordtype">int</font> order()<font class="keyword"> const </font>{ <font class="keywordflow">return</font> ng_; }
00138     <font class="keywordtype">int</font> atom_map(<font class="keywordtype">int</font> n, <font class="keywordtype">int</font> g)<font class="keyword"> const </font>{ <font class="keywordflow">return</font> (c1_) ? n : atom_map_[n][g]; }
00139     <font class="keywordtype">int</font> shell_map(<font class="keywordtype">int</font> n, <font class="keywordtype">int</font> g)<font class="keyword"> const </font>{ <font class="keywordflow">return</font> (c1_) ? n : shell_map_[n][g]; }
00140     <font class="keywordtype">int</font> lambda(<font class="keywordtype">int</font> ij)<font class="keyword"> const </font>{ <font class="keywordflow">return</font> (c1_) ? 1 : (<font class="keywordtype">int</font>) lamij_[ij]; }
00141     <font class="keywordtype">int</font> lambda(<font class="keywordtype">int</font> i, <font class="keywordtype">int</font> j)<font class="keyword"> const</font>
00142 <font class="keyword">                          </font>{ <font class="keywordflow">return</font> (c1_) ? 1 : (<font class="keywordtype">int</font>) lamij_[ij_offset(i,j)]; }
00143 
00144     <font class="keywordtype">int</font> in_p1(<font class="keywordtype">int</font> n)<font class="keyword"> const </font>{ <font class="keywordflow">return</font> (c1_) ? 1 : (<font class="keywordtype">int</font>) p1_[n]; }
00145     <font class="keywordtype">int</font> in_p2(<font class="keywordtype">int</font> ij)<font class="keyword"> const </font>{ <font class="keywordflow">return</font> (c1_) ? 1 : (<font class="keywordtype">int</font>) lamij_[ij]; }
00146     <font class="keywordtype">int</font> in_p4(<font class="keywordtype">int</font> ij, <font class="keywordtype">int</font> kl, <font class="keywordtype">int</font> i, <font class="keywordtype">int</font> j, <font class="keywordtype">int</font> k, <font class="keywordtype">int</font> l) <font class="keyword">const</font>;
00147     
00148     <font class="keywordtype">int</font> nfunction(<font class="keywordtype">int</font> i)<font class="keyword"> const</font>
00149 <font class="keyword">                            </font>{ <font class="keywordflow">return</font> (c1_) ? gbs_-&gt;nbasis() : nbf_in_ir_[i]; }
00150 
00151     <font class="keywordtype">int</font> nblocks()<font class="keyword"> const </font>{ <font class="keywordflow">return</font> nblocks_; }
00152 
00153     <font class="keywordtype">void</font> print(std::ostream&amp; =ExEnv::out0(), <font class="keywordtype">int</font> verbose=1);
00154 
00155     <font class="comment">// these return blocked dimensions</font>
00156     RefSCDimension AO_basisdim();
00157     RefSCDimension SO_basisdim();
00158 
00159     <font class="comment">// return the basis function rotation matrix R(g)</font>
00160     RefSCMatrix r(<font class="keywordtype">int</font> g);
00161 
00162     <font class="comment">// return information about the transformation from AOs to SOs</font>
00163     SO_block * aotoso_info();
00164     RefSCMatrix aotoso();
00165     RefSCMatrix sotoao();
00166 
00167     <font class="comment">// given a skeleton matrix, form the symmetrized matrix in the SO basis</font>
00168     <font class="keywordtype">void</font> symmetrize(<font class="keyword">const</font> RefSymmSCMatrix&amp; skel, <font class="keyword">const</font> RefSymmSCMatrix&amp; sym);
00169 
00170     <font class="comment">// transform a matrix from AO-&gt;SO or SO-&gt;AO.</font>
00171     <font class="comment">// this can take either a blocked or non-blocked AO basis matrix.</font>
00172     RefSymmSCMatrix to_SO_basis(<font class="keyword">const</font> RefSymmSCMatrix&amp;);
00173 
00174     <font class="comment">// this returns a non-blocked AO basis matrix.</font>
00175     RefSymmSCMatrix to_AO_basis(<font class="keyword">const</font> RefSymmSCMatrix&amp;);
00176 
00177     <font class="comment">// these two are just for eigenvectors</font>
00178     <font class="comment">// returns non-blocked AO basis eigenvectors</font>
00179     RefSCMatrix evecs_to_AO_basis(<font class="keyword">const</font> RefSCMatrix&amp;);
00180     <font class="comment">// returns blocked SO basis eigenvectors</font>
00181     RefSCMatrix evecs_to_SO_basis(<font class="keyword">const</font> RefSCMatrix&amp;);
00182 };
00183 
00184 <font class="keyword">inline</font> <font class="keywordtype">int</font>
00185 PetiteList::in_p4(<font class="keywordtype">int</font> ij, <font class="keywordtype">int</font> kl, <font class="keywordtype">int</font> i, <font class="keywordtype">int</font> j, <font class="keywordtype">int</font> k, <font class="keywordtype">int</font> l)<font class="keyword"> const</font>
00186 <font class="keyword"></font>{
00187   <font class="keywordflow">if</font> (c1_)
00188     <font class="keywordflow">return</font> 1;
00189   
00190   sc_int_least64_t ijkl = i_offset64(ij)+kl;
00191   <font class="keywordtype">int</font> nijkl=0;
00192 
00193   <font class="keywordflow">for</font> (<font class="keywordtype">int</font> g=0; g &lt; ng_; g++) {
00194     <font class="keywordtype">int</font> gij = ij_offset(shell_map_[i][g],shell_map_[j][g]);
00195     <font class="keywordtype">int</font> gkl = ij_offset(shell_map_[k][g],shell_map_[l][g]);
00196     sc_int_least64_t gijkl = ij_offset64(gij,gkl);
00197 
00198     <font class="keywordflow">if</font> (gijkl &gt; ijkl)
00199       <font class="keywordflow">return</font> 0;
00200     <font class="keywordflow">else</font> <font class="keywordflow">if</font> (gijkl == ijkl)
00201       nijkl++;
00202   }
00203 
00204   <font class="keywordflow">return</font> ng_/nijkl;
00205 }
00206 
00207 }
00208 
00209 <font class="preprocessor">#endif</font>
00210 <font class="preprocessor"></font>
00211 <font class="comment">// Local Variables:</font>
00212 <font class="comment">// mode: c++</font>
00213 <font class="comment">// c-file-style: "ETS"</font>
00214 <font class="comment">// End:</font>
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