%bcond_with bootstrap %global packname Biostrings %global rlibdir %{_libdir}/R/library Name: R-%{packname} Version: 2.22.0 Release: 2 Summary: String objects representing biological sequences, and matching algorithms Group: Sciences/Mathematics License: Artistic-2.0 URL: http://bioconductor.org/packages/release/bioc/html/%{packname}.html Source0: http://bioconductor.org/packages/release/bioc/src/contrib/%{packname}_%{version}.tar.gz Requires: R-methods R-IRanges R-graphics R-methods R-stats R-utils Requires: R-RUnit R-Rmpi %if %{with bootstrap} Requires: R-BSgenome R-BSgenome.Celegans.UCSC.ce2 Requires: R-BSgenome.Dmelanogaster.UCSC.dm3 R-drosophila2probe Requires: R-hgu95av2probe R-hgu133aprobe R-GenomicFeatures Requires: R-hgu95av2cdf R-affy R-affydata %endif BuildRequires: R-devel Rmath-devel texlive-collection-latex R-methods BuildRequires: R-IRanges R-graphics R-methods R-stats R-utils R-IRanges BuildRequires: R-RUnit R-Rmpi %if %{without bootstrap} BuildRequires: R-BSgenome R-BSgenome.Celegans.UCSC.ce2 BuildRequires: R-BSgenome.Dmelanogaster.UCSC.dm3 R-drosophila2probe BuildRequires: R-hgu95av2probe R-hgu133aprobe R-GenomicFeatures BuildRequires: R-hgu95av2cdf R-affy R-affydata %endif BuildRequires: x11-server-xvfb %description Memory efficient string containers, string matching algorithms, and other utilities, for fast manipulation of large biological sequences or sets of %prep %setup -q -c -n %{packname} %build %install mkdir -p %{buildroot}%{rlibdir} %{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) rm -f %{buildroot}%{rlibdir}/R.css %if %{without bootstrap} %check xvfb-run %{_bindir}/R CMD check %{packname} %endif %files %dir %{rlibdir}/%{packname} %doc %{rlibdir}/%{packname}/doc %doc %{rlibdir}/%{packname}/html %doc %{rlibdir}/%{packname}/DESCRIPTION %doc %{rlibdir}/%{packname}/NEWS %{rlibdir}/%{packname}/INDEX %{rlibdir}/%{packname}/NAMESPACE %{rlibdir}/%{packname}/Meta %{rlibdir}/%{packname}/R %{rlibdir}/%{packname}/UnitTests %{rlibdir}/%{packname}/data %{rlibdir}/%{packname}/extdata %{rlibdir}/%{packname}/help %{rlibdir}/%{packname}/include %{rlibdir}/%{packname}/libs %changelog * Wed Feb 22 2012 Paulo Andrade <pcpa@mandriva.com.br> 2.22.0-2 + Revision: 778917 - Rebuild with proper dependencies * Fri Feb 17 2012 Paulo Andrade <pcpa@mandriva.com.br> 2.22.0-1 + Revision: 775768 - Import R-Biostrings - Import R-Biostrings