%global packname  GenomicFeatures
%global rlibdir  %{_libdir}/R/library

Name:             R-%{packname}
Version:          1.6.8
Release:          1
Summary:          Tools for making and manipulating transcript centric annotations
Group:            Sciences/Mathematics
License:          Artistic-2.0
URL:              http://bioconductor.org/packages/release/bioc/html/%{packname}.html
Source0:          http://bioconductor.org/packages/release/bioc/src/contrib/%{packname}_%{version}.tar.gz
Requires:         R-IRanges R-GenomicRanges R-AnnotationDbi 
Requires:         R-methods R-DBI R-RSQLite R-IRanges R-GenomicRanges R-Biostrings R-rtracklayer R-biomaRt R-RCurl R-utils R-Biobase 
Requires:         R-rtracklayer R-biomaRt R-org.Mm.eg.db R-Biostrings R-BSgenome R-BSgenome.Hsapiens.UCSC.hg18 R-BSgenome.Celegans.UCSC.ce2 R-RUnit 
BuildRequires:    R-devel Rmath-devel texlive-collection-latex R-IRanges R-GenomicRanges R-AnnotationDbi
BuildRequires:    R-methods R-DBI R-RSQLite R-IRanges R-GenomicRanges R-Biostrings R-rtracklayer R-biomaRt R-RCurl R-utils R-Biobase 
BuildRequires:    R-rtracklayer R-biomaRt R-org.Mm.eg.db R-Biostrings R-BSgenome R-BSgenome.Hsapiens.UCSC.hg18 R-BSgenome.Celegans.UCSC.ce2 R-RUnit 

%description
A set of tools and methods for making and manipulating transcript centric
annotations. With these tools the user can easily download the genomic
locations of the transcripts, exons and cds of a given organism, from
either the UCSC Genome Browser or a BioMart database (more sources will be
supported in the future). This information is then stored in a local
database that keeps track of the relationship between transcripts, exons,
cds and genes. Flexible methods are provided for extracting the desired
features in a convenient format.

%prep
%setup -q -c -n %{packname}

%build

%install
mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css

%files
%dir %{rlibdir}/%{packname}
%doc %{rlibdir}/%{packname}/doc
%doc %{rlibdir}/%{packname}/html
%doc %{rlibdir}/%{packname}/DESCRIPTION
%doc %{rlibdir}/%{packname}/NEWS
%{rlibdir}/%{packname}/INDEX
%{rlibdir}/%{packname}/NAMESPACE
%{rlibdir}/%{packname}/Meta
%{rlibdir}/%{packname}/R
%{rlibdir}/%{packname}/extdata
%{rlibdir}/%{packname}/help
%{rlibdir}/%{packname}/txdb-template
%{rlibdir}/%{packname}/unitTests


%changelog
* Sat Feb 18 2012 Paulo Andrade <pcpa@mandriva.com.br> 1.6.8-1
+ Revision: 776669
- Import R-GenomicFeatures
- Import R-GenomicFeatures