# uncomment to DISABLE build of debug packages
#%#define _enable_debug_packages %{nil}
#%#define debug_package %{nil}
%define _requires_exceptions perl(jQuery)
# Run "sage -testall" after building documentation?
%define with_check 0
%define SAGE_TIMEOUT 60
%define SAGE_TIMEOUT_LONG 300
# http://bugs.python.org/issue7689
%define pickle_patch 1
%define name sagemath
%define SAGE_ROOT %{_datadir}/sage
%define SAGE_LOCAL %{SAGE_ROOT}/local
%define SAGE_DEVEL %{SAGE_ROOT}/devel
%define SAGE_DOC %{SAGE_DEVEL}/doc
%define SAGE_DATA %{SAGE_ROOT}/data
# Need this because as of sage 4.0.1, it only works "correctly" with python-pexpect 2.0
%define use_sage_pexpect 1
# Need this because as of sage 4.1, it only works "correctly" with python-networkx 0.36
%define use_sage_networkx 1
%define SAGE_PYTHONPATH %{SAGE_ROOT}/site-packages
Name: %{name}
Group: Sciences/Mathematics
License: GPL
Summary: A free open-source mathematics software system
Version: 4.4
Release: %mkrel 1
Source0: http://www.sagemath.org/src/sage-%{version}.tar
Source1: moin-1.9.1-filesystem.tar.bz2
Source2: sets.py
URL: http://www.sagemath.org
BuildRoot: %{_tmppath}/%{name}-%{version}-%{release}-buildroot
#------------------------------------------------------------------------
%if %{with_check}
BuildRequires: axiom
%endif
BuildRequires: boost-devel
BuildRequires: cbc-devel
%if %{with_check}
BuildRequires: cddlib-devel
%endif
BuildRequires: cliquer-devel
BuildRequires: dos2unix
BuildRequires: ecl
BuildRequires: eclib-devel
BuildRequires: ecm-devel
%if %{with_check}
BuildRequires: eclib-mwrank
%endif
BuildRequires: flex bison
BuildRequires: flint-devel
BuildRequires: fplll-devel
BuildRequires: gap-system
%if %{with_check}
BuildRequires: gap-system-packages
%endif
BuildRequires: gcc-gfortran
BuildRequires: gd-devel
%if %{with_check}
BuildRequires: gfan
%endif
BuildRequires: ghmm-devel
BuildRequires: givaro-devel
BuildRequires: glpk-devel
%if %{with_check}
BuildRequires: gp2c pari pari-data
%endif
BuildRequires: gsl-devel
BuildRequires: iml
BuildRequires: ipython
%if %{with_check}
BuildRequires: lcalc
%endif
BuildRequires: libatlas-devel
BuildRequires: libblas-devel
BuildRequires: libgmpxx-devel
BuildRequires: libm4ri-devel
BuildConflicts: libm4ri-static-devel
BuildRequires: libpari-devel
BuildRequires: libxml2-devel
BuildRequires: linalg-linbox-devel
%if %{with_check}
BuildRequires: macaulay2
BuildRequires: maxima-runtime
%endif
BuildRequires: mpfi-devel
BuildConflicts: mpfi-static-devel
BuildRequires: ntl-devel
%if %{with_check}
BuildRequires: octave
BuildRequires: palp
%endif
BuildRequires: png-devel
BuildRequires: polybori
BuildRequires: polybori-devel
BuildConflicts: polybori-static-devel
%if %{with_check}
BuildRequires: polymake
%endif
BuildRequires: pynac-devel
%if %{with_check}
BuildRequires: python-cvxopt
%endif
BuildRequires: python-cython
BuildRequires: python-ghmm
BuildRequires: python-jinja2
BuildRequires: python-matplotlib
BuildRequires: python-matplotlib-gtk
BuildRequires: python-mpmath
%if %{with_check}
%if !%{use_sage_networkx}
BuildRequires: python-networkx
%endif
%endif
BuildRequires: python-numpy-devel
%if %{with_check}
%if !%{use_sage_pexpect}
Requires: python-pexpect
%endif
BuildRequires: python-polybori
%endif
%if %{with_check}
BuildRequires: python-rpy python-rpy2
%endif
BuildRequires: python-setuptools
BuildRequires: python-scipy
BuildRequires: python-sphinx
%if %{with_check}
BuildRequires: python-sqlite2
BuildRequires: python-sympy
%endif
BuildRequires: python-twisted-core
BuildRequires: python-twisted-web2
BuildRequires: qd-static-devel
%if %{with_check}
BuildRequires: python-zodb3
%endif
BuildRequires: ratpoints
%if %{with_check}
BuildRequires: R-base
%endif
BuildRequires: readline-devel
BuildRequires: scons
BuildRequires: singular
BuildRequires: singular-devel
BuildConflicts: singular-static-devel
BuildRequires: symmetrica-static-devel
%if %{with_check}
BuildRequires: tachyon
%endif
BuildRequires: texlive-latex
BuildRequires: texlive-fonts
BuildRequires: texlive-mfwin
BuildRequires: texlive-texmf-afm
BuildRequires: texlive-texmf-fonts
BuildRequires: texlive-texmf-latex
BuildRequires: zn_poly-static-devel
#------------------------------------------------------------------------
Requires: axiom
Requires: bzip2
Requires: cddlib-devel
Requires: cliquer-devel
Requires: ecl
Requires: eclib-mwrank
Requires: ecm
Requires: flint
Requires: fplll
Requires: gap-system gap-system-packages
Requires: gcc-gfortran
Requires: gd-utils
Requires: gfan
Requires: gp2c pari pari-data libpari-devel
Requires: ipython
Requires: jmol
%ifarch %{ix86}
Suggests: kant-kash
%endif
Requires: lcalc
Requires: libatlas
Requires: libblas
# FIXME .a and .so files (this is also a sage specific library)
Requires: libm4ri
# FIXME unversioned .so
Requires: libeclib-devel
Requires: libmpfi
Requires: libopencdk
# currently in non-free due to lack of license information
Suggests: lie
Requires: linalg-linbox
Requires: macaulay2
Requires: maxima
Requires: xmaxima
# Requires: mercurial
Requires: moin
Requires: ntl-devel
Requires: octave
Requires: palp
Requires: perl
Requires: polybori
Requires: polybori-devel
Requires: polymake
Requires: povray
Requires: pynac-devel
Requires: python
Requires: python-cvxopt
Requires: python-cython
Requires: python-gd
Requires: python-ghmm
Requires: python-gnutls
Requires: python-jinja2
%if !%{use_sage_networkx}
Requires: python-networkx
%endif
Requires: python-matplotlib
Requires: python-mpmath
Requires: python-numpy
%if !%{use_sage_pexpect}
Requires: python-pexpect
%endif
Requires: python-polybori
Requires: python-pycrypto
Requires: python-pygments
Requires: python-rpy python-rpy2
# scipy should also provide the weave (http://www.scipy.org/Weave) dependency
Requires: python-scipy
Requires: python-sphinx
Requires: python-sqlite2
Requires: python-sympy
Requires: python-twisted-core
Requires: python-twisted-web2
# FIXME only enough dependencies to run example.sage were added to distro
# see package url for information on other listed dependencies
Requires: python-zodb3
%ifarch %{ix86}
Requires: qepcad
%endif
Requires: R-base
Requires: scilab
Requires: singular
Requires: symmetrica
Requires: sympow
Requires: tachyon
Requires: texlive-latex
Requires: texlive-fonts
Requires: texlive-mfwin
Requires: texlive-texmf-afm
Requires: texlive-texmf-fonts
Requires: texlive-texmf-latex
#------------------------------------------------------------------------
Obsoletes: sage-doc <= 3.4.2
Conflicts: sage-doc <= 3.4.2
Obsoletes: sage-examples <= 3.4.2
Conflicts: sage-examples <= 3.4.2
#------------------------------------------------------------------------
Patch0: sage-4.4.patch
Patch1: sage-4.4-sage_scripts.patch
Patch2: sage-4.4-wiki.patch
Patch3: sage-4.4-python2.6.patch
Patch4: sage-4.4-qepcad.patch
Patch5: sage-4.4-lie.patch
Patch6: sage-4.4-sagedoc.patch
Patch7: sage-4.4-list_plot.patch
Patch8: sage-4.4-givaro.patch
Patch9: sage-4.4-sagenb.patch
Patch10: sage-4.4-gmp5.patch
Patch11: sage-4.4-arpack.patch
Patch12: sage-4.4-maxima.patch
# adpated from http://trac.sagemath.org/sage_trac/ticket/5448#comment:37
# basically the spkg patch rediffed
# this removes most of the remaining noise in the doctects:
# matplotlib.numerix and all its subpackages are deprecated.
# They will be removed soon. Please use numpy instead.
Patch100: sage-4.4-networkx.patch
# http://trac.sagemath.org/sage_trac/attachment/ticket/8316/trac_8316-remove_jinja.2.patch
Patch101: trac_8316-remove_jinja.2.patch
#------------------------------------------------------------------------
%description
Sage is a free open-source mathematics software system licensed
under the GPL. It combines the power of many existing open-source
packages into a common Python-based interface.
########################################################################
%prep
%setup -q -n sage-%{version}
pushd spkg
mkdir -p build
for pkg in conway_polynomials-0.2 \
elliptic_curves-0.1 \
examples-%{version} \
extcode-%{version} \
flintqs-20070817.p4 \
genus2reduction-0.3.p6 \
graphs-20070722.p1 \
polytopes_db-20100210 \
rubiks-20070912.p10 \
sage-%{version} \
sagenb-0.7.5.3 \
sage_scripts-%{version} \
sagetex-2.2.5 \
%if %{pickle_patch}
python-2.6.4.p7 \
%endif
; do
tar jxf standard/$pkg.spkg -C build
done
rm -f build/sage_scripts-%{version}/*.orig
%if %{use_sage_pexpect}
tar jxf standard/pexpect-2.0.p4.spkg -C build
%endif
%if %{use_sage_networkx}
tar jxf standard/networkx-0.99.p1-fake_really-0.36.p1.spkg -C build
%endif
popd
# jinja was removed from sage but patch to avoid requiring it at
# build time not yet applied
pushd spkg/build/sage-%{version}
%patch101 -p1
popd
%patch0 -p1
%patch1 -p1
%patch2 -p1
%patch3 -p1
%patch4 -p1
%patch5 -p1
%patch6 -p1
%patch7 -p1
%patch8 -p1
%patch9 -p1
%patch10 -p1
%patch11 -p1
%patch12 -p1
# if executing prep, clean buildroot
rm -rf %{buildroot}
%if %{use_sage_networkx}
%patch100 -p1
%endif
export SAGE_ROOT=%{buildroot}%{SAGE_ROOT}
export SAGE_LOCAL=%{buildroot}%{SAGE_LOCAL}
export SAGE_DEVEL=%{buildroot}%{SAGE_DEVEL}
mkdir -p $SAGE_ROOT $SAGE_LOCAL $SAGE_DEVEL
# match sage rebuild setup
mkdir -p $SAGE_DEVEL/sage
ln -sf %{_builddir}/sage-%{version}/spkg/build/sage-%{version}/sage $SAGE_DEVEL/sage/sage
# match system packages as sage packages
ln -sf %{_libdir} $SAGE_LOCAL/lib
ln -sf %{_includedir} $SAGE_LOCAL/include
ln -sf %{_datadir} $SAGE_LOCAL/share
#------------------------------------------------------------------------
pushd spkg/build/genus2reduction-0.3.p6/src
# based on debian patch
cat > Makefile << EOF
CFLAGS = -O2 -I%{_includedir}/pari
LDFLAGS = -lpari
CC = gcc
genus2reduction:
\${CC} \${CFLAGS} \${LDFLAGS} -o genus2reduction genus2reduction.c
install: genus2reduction
mkdir -p \${DESTDIR}/%{SAGE_LOCAL}/bin
install -p \$< \${DESTDIR}/%{SAGE_LOCAL}/bin
clean:
rm -f genus2reduction
EOF
popd
#------------------------------------------------------------------------
pushd spkg/build/sage-%{version}
# ensure proper/preferred libatlas is in linker path
perl -pi -e 's|^(extra_link_args = ).*|$1\["-L%{_libdir}/atlas"\]|;' sage/misc/cython.py
# some .c files are not (re)generated
find . \( -name \*.pyx -o -name \*.pxd \) -exec touch {} \;
popd
########################################################################
%build
export SAGE_ROOT=%{buildroot}%{SAGE_ROOT}
export SAGE_LOCAL=%{buildroot}%{SAGE_LOCAL}
export SAGE_DEVEL=%{buildroot}%{SAGE_DEVEL}
export SAGE_FORTRAN=%{_bindir}/gfortran
export SAGE_FORTRAN_LIB=`gfortran --print-file-name=libgfortran.so`
export DESTDIR=%{buildroot}
#------------------------------------------------------------------------
pushd spkg/build/sage-%{version}
pushd c_lib
CXX=g++ scons
popd
pushd sage/libs/mpmath
dos2unix -U ext_impl.pxd ext_libmp.pyx ext_main.pxd ext_main.pyx
popd
python ./setup.py build
popd
#------------------------------------------------------------------------
pushd spkg/build/sagenb-0.7.5.3/src/sagenb
python ./setup.py build
popd
#------------------------------------------------------------------------
pushd spkg/build/flintqs-20070817.p4/src
%make CPP="g++ %{optflags} -fPIC"
popd
#------------------------------------------------------------------------
pushd spkg/build/genus2reduction-0.3.p6/src
%make
popd
#------------------------------------------------------------------------
pushd spkg/build/rubiks-20070912.p10/src
%make CC="gcc -fPIC" CXX="g++ -fPIC" CFLAGS="%{optflags}"
popd
#------------------------------------------------------------------------
%if %{pickle_patch}
pushd spkg/build/python-2.6.4.p7/src
cp ../patches/cPickle.c Modules/cPickle.c
%configure
perl -pi \
-e 's|-Wl,--no-undefined||;' \
Makefile
%make
popd
%endif
########################################################################
%install
export SAGE_ROOT=%{buildroot}%{SAGE_ROOT}
export SAGE_LOCAL=%{buildroot}%{SAGE_LOCAL}
export SAGE_DEVEL=%{buildroot}%{SAGE_DEVEL}
export SAGE_DATA=%{buildroot}%{SAGE_DATA}
export SAGE_DOC=%{buildroot}%{SAGE_DOC}
export SAGE_PYTHONPATH=%{buildroot}%{SAGE_PYTHONPATH}
export DESTDIR=%{buildroot}
#------------------------------------------------------------------------
mkdir -p %{buildroot}%{_bindir}
mkdir -p %{buildroot}%{_libdir}
mkdir -p $SAGE_PYTHONPATH
rm -fr $SAGE_DEVEL/sage $SAGE_LOCAL/{include,lib,share,notebook}
mkdir -p $SAGE_DATA $SAGE_DOC $SAGE_LOCAL $SAGE_DEVEL/sage
ln -sf %{_builddir}/sage-%{version}/spkg/build/sage-%{version}/sage $SAGE_DEVEL/sage/sage
ln -sf %{_libdir} $SAGE_LOCAL/lib
ln -sf %{_includedir} $SAGE_LOCAL/include
ln -sf %{_datadir} $SAGE_LOCAL/share
#------------------------------------------------------------------------
# "fix" most remaining doctest failures
cp -f %{SOURCE2} $SAGE_PYTHONPATH
#------------------------------------------------------------------------
# install moin changes
pushd %{buildroot}
tar jxf %{SOURCE1}
popd
# make jsMath available to moin
mkdir -p %{buildroot}%{py_puresitedir}/MoinMoin/web/static/htdocs/common/js
rm -f %{buildroot}%{py_puresitedir}/MoinMoin/web/static/htdocs/common/js/jsmath
ln -sf %{SAGE_DEVEL}/sage/sagenb/data/jsmath %{buildroot}%{py_puresitedir}/MoinMoin/web/static/htdocs/common/js/jsmath
#------------------------------------------------------------------------
pushd spkg/build/sage-%{version}
python setup.py install --root=%{buildroot}
cp -fa c_lib/libcsage.so %{buildroot}%{_libdir}
pushd sage
# install sage notebook templates
cp -fa server/notebook/templates %{buildroot}%{py_platsitedir}/sage/server/notebook
popd
# install documentation sources
rm -fr $SAGE_DOC/{common,en,fr}
cp -far doc/{common,en,fr} $SAGE_DOC
popd
#------------------------------------------------------------------------
pushd spkg/build/sagenb-0.7.5.3/src/sagenb
rm -f %{buildroot}%{py_platsitedir}/sagenb/data/jmol
python setup.py install --root=%{buildroot} --install-purelib=%{py_platsitedir}
# FIXME needs more then just path adjusting
rm -f %{buildroot}%{_bindir}/sage3d
# remove duplicated jmol (that only works with sage)
rm -f %{buildroot}%{_bindir}/jmol
rm -fr %{buildroot}%{py_platsitedir}/sagenb/data/jmol
# and use system one
ln -sf %{_datadir}/jmol %{buildroot}%{py_platsitedir}/sagenb/data/jmol
popd
#------------------------------------------------------------------------
%if %{use_sage_pexpect}
pushd spkg/build/pexpect-2.0.p4/src
cp -f {ANSI,FSM,pexpect,pxssh,screen}.py $SAGE_PYTHONPATH
popd
%endif
#------------------------------------------------------------------------
%if %{use_sage_networkx}
pushd spkg/build/networkx-0.99.p1-fake_really-0.36.p1/src
rm -fr $SAGE_PYTHONPATH/networkx*
rm -fr %{buildroot}%{py_platsitedir}/networkx*
python setup.py install --root=%{buildroot} --install-purelib=%{SAGE_PYTHONPATH}
rm -fr $SAGE_DOC/networkx*
mv -f %{buildroot}/%{_datadir}/doc/* $SAGE_DOC
rmdir %{buildroot}/%{_datadir}/doc
popd
%endif
#------------------------------------------------------------------------
pushd spkg/build/sage_scripts-%{version}
mkdir -p $SAGE_LOCAL/bin
cp -fa sage-* *doctest.py ipy_profile_sage.py $SAGE_LOCAL/bin
cp -far ipython $SAGE_ROOT
cp -fa COPYING.txt $SAGE_ROOT
pushd $SAGE_LOCAL/bin
ln -sf %{_bindir}/python sage.bin
ln -sf %{_bindir}/Singular sage_singular
ln -sf %{_bindir}/gp sage_pari
ln -sf %{_bindir}/gap gap_stamp
popd
popd
#------------------------------------------------------------------------
pushd spkg/build/flintqs-20070817.p4/src
cp -fa QuadraticSieve $SAGE_LOCAL/bin
popd
#------------------------------------------------------------------------
pushd spkg/build/genus2reduction-0.3.p6/src
%makeinstall_std
popd
#------------------------------------------------------------------------
pushd spkg/build/rubiks-20070912.p10/src
make DESTDIR=%{buildroot} PREFIX=%{SAGE_LOCAL} INSTALL=cp install
popd
#------------------------------------------------------------------------
rm -f %{buildroot}%{_bindir}/spkg-debian-maybe
pushd $SAGE_LOCAL/bin/
# not supported - only prebuilt packages for now
rm -f sage-{bdist,build,build-debian,clone,crap,debsource,download_package,env,libdist,location,make_devel_packages,omega,pkg,pkg-nocompress,pull,push,sdist,sbuildhack,upgrade}
rm -f sage-list-* sage-mirror* SbuildHack.pm sage-test-*
rm -f sage-{verify-pyc,hardcode_sage_root,check-64,spkg*,update*,starts}
rm -f *~
# osx only
rm -f sage-{check-libraries.py,ldwrap,open,osx-open,README-osx.txt}
# windows only
rm -f sage-rebase_sage.sh
popd
#------------------------------------------------------------------------
pushd spkg/build/conway_polynomials-0.2
mkdir -p $SAGE_DATA/conway_polynomials
cp -fa src/conway_polynomials/* $SAGE_DATA/conway_polynomials
popd
#------------------------------------------------------------------------
pushd spkg/build/elliptic_curves-0.1
cp -fa cremona_mini/src/cremona_mini $SAGE_DATA
mkdir -p $SAGE_DATA/ellcurves
cp -fa ellcurves/rank* $SAGE_DATA/ellcurves
popd
#------------------------------------------------------------------------
pushd spkg/build/extcode-%{version}
mkdir -p $SAGE_DATA/extcode
cp -far \
gap \
genus2reduction \
gnuplot \
images \
kash \
macaulay2 \
magma \
maple \
matlab \
mathematica \
maxima \
MuPAD \
mwrank \
notebook \
octave \
pari \
pickle_jar \
QEPCAD \
sagebuild \
scilab \
singular \
sobj \
$SAGE_DATA/extcode
popd
#------------------------------------------------------------------------
pushd spkg/build/graphs-20070722.p1
mkdir -p $SAGE_DATA/graphs
cp -fa graphs/* $SAGE_DATA/graphs
popd
#------------------------------------------------------------------------
pushd spkg/build/polytopes_db-20100210
mkdir -p $SAGE_DATA/reflexive_polytopes
cp -fa reflexive_polytopes/* $SAGE_DATA/reflexive_polytopes
popd
#------------------------------------------------------------------------
mkdir -p $SAGE_ROOT/examples
pushd spkg/build/examples-%{version}
cp -far ajax calculus comm_algebra example.py example.sage finance \
fortran gsl latex_embed linalg modsym programming \
test_all tests worksheets \
$SAGE_ROOT/examples
popd
#------------------------------------------------------------------------
pushd spkg/build/sagetex-2.2.5/src
python setup.py install --root=%{buildroot} --install-purelib=%{py_platsitedir}
popd
#------------------------------------------------------------------------
cat > %{buildroot}%{_bindir}/sage << EOF
#!/bin/sh
export CUR=\`pwd\`
##export DOT_SAGE="\$HOME/.sage/"
export DOT_SAGENB="\$DOT_SAGE"
mkdir -p \$DOT_SAGE/{maxima,sympow,tmp}
export SAGE_TESTDIR=\$DOT_SAGE/tmp
export SAGE_ROOT="$SAGE_ROOT"
export SAGE_LOCAL="$SAGE_LOCAL"
export SAGE_DATA="$SAGE_DATA"
export SAGE_DEVEL="$SAGE_DEVEL"
##export SAGE_DOC="$SAGE_DOC"
export PATH=$SAGE_LOCAL/bin:%{_datadir}/cdd/bin:\$PATH
export SINGULARPATH=%{_datadir}/singular/LIB
export SINGULAR_BIN_DIR=%{_datadir}/singular/%{_arch}
%if %{use_sage_pexpect}
##export PYTHONPATH="$SAGE_PYTHONPATH"
%endif
export SAGE_CBLAS=cblas
export SAGE_FORTRAN=%{_bindir}/gfortran
export SAGE_FORTRAN_LIB=\`gfortran --print-file-name=libgfortran.so\`
export SYMPOW_DIR="\$DOT_SAGE/sympow"
$SAGE_LOCAL/bin/sage-sage "\$@"
EOF
#------------------------------------------------------------------------
chmod +x %{buildroot}%{_bindir}/sage
#------------------------------------------------------------------------
# fixup cython interface:
# o link with proper atlas
# o install csage headers
# o install .pxi and .pxd files
pushd spkg/build/sage-%{version}
# make atlas/blas available to compiled sources
perl -pi -e \
's|^(extra_link_args =).*|$1 ["-L%{_libdir}/atlas"]|;' \
%{buildroot}/%{py_platsitedir}/sage/misc/cython.py
# make csage headers available
mkdir -p %{buildroot}/%{_includedir}/csage
cp -fa c_lib/include/* %{buildroot}/%{_includedir}/csage
for f in `find sage \( -name \*.pxi -o -name \*.pxd \)`; do
install -D -m 0644 $f %{buildroot}/%{py_platsitedir}/$f
done
# need this or will not "find" the files in the directory, and
# fail to link with gmp
# FIXME sagemath is no longer using gmp by default, but mpir
# (licence issue, with gmp being gpl 3, and mpir gpl 2)
touch %{buildroot}/%{py_platsitedir}/sage/libs/gmp/__init__.py
popd
#------------------------------------------------------------------------
# Build documentation, using %{buildroot} environment, as it needs
# to run and load sage python modules
pushd spkg/build/sage-%{version}/doc
# Big hack (tm)
# when passing the full buildroot path, the pexpect interface fails
# to communicate with gap, due to too long workspace pathname
# (that is longer then 80 characters)
# export DOT_SAGE=%{buildroot}/.sage
export DOT_SAGE=/tmp/sage$$
mkdir -p $DOT_SAGE/tmp
export SAGE_DOC=`pwd`
export PATH=%{buildroot}%{_bindir}:$SAGE_LOCAL/bin:%{_datadir}/cdd/bin:$PATH
export SINGULARPATH=%{_datadir}/singular/LIB
export SINGULAR_BIN_DIR=%{_datadir}/singular/%{_arch}
export LD_LIBRARY_PATH=%{buildroot}%{_libdir}:$LD_LIBRARY_PATH
export PYTHONPATH=%{buildroot}%{py_platsitedir}
# there we go
python common/builder.py all html
export SAGE_DOC=%{buildroot}%{SAGE_DOC}
cp -far output $SAGE_DOC
#--------------------------------------------------------------------
%if %{with_check}
%if %{use_sage_pexpect}
cp -f $SAGE_PYTHONPATH/{ANSI,FSM,pexpect,pxssh,screen}.py %{buildroot}%{py_platsitedir}
%endif
%if %{use_sage_networkx}
# move in buildroot because PYTHONPATH is already overriden
mv -f %{buildroot}%{SAGE_PYTHONPATH}/networkx* %{buildroot}%{py_platsitedir}
%endif
# make sage-test checking of 'devel' prefix happy
export SAGE_DOC=%{buildroot}%{SAGE_DOC}
rm -f $SAGE_ROOT/doc
SAGE_TIMEOUT=%{SAGE_TIMEOUT} SAGE_TIMEOUT_LONG=%{SAGE_TIMEOUT_LONG} sage -testall || :
cp -f $DOT_SAGE/tmp/test.log $SAGE_DOC
%if %{use_sage_pexpect}
rm -f %{buildroot}%{py_platsitedir}/{ANSI,FSM,pexpect,pxssh,screen}.py
%endif
%if %{use_sage_networkx}
# revert back to directory where it will be installed
mv -f %{buildroot}%{py_platsitedir}/networkx* %{buildroot}%{SAGE_PYTHONPATH}
%endif
%endif
#--------------------------------------------------------------------
# some "user setup" files will be installed there...
rm -fr $DOT_SAGE
popd
#------------------------------------------------------------------------
# Script was used to build documentation
perl -pi -e 's|%{buildroot}||g;s|^##||g;' %{buildroot}%{_bindir}/sage
%if %{pickle_patch}
pushd spkg/build/python-2.6.4.p7/src
install -m 0644 ../patches/pickle.py %{buildroot}%{SAGE_PYTHONPATH}
cp `find . -name cPickle.so` %{buildroot}%{SAGE_PYTHONPATH}
popd
%endif
#------------------------------------------------------------------------
# Fixup links
rm -fr $SAGE_DEVEL/sage $SAGE_DATA/extcode/sage $SAGE_ROOT/doc
ln -sf %{py_platsitedir} $SAGE_DEVEL/sage
ln -sf %{py_platsitedir} $SAGE_DATA/extcode/sage
ln -sf %{SAGE_DOC} $SAGE_ROOT/doc
rm -f %{buildroot}%{py_platsitedir}/site-packages
# Install menu and icons
pushd spkg/build/extcode-%{version}
install -m644 -D notebook/images/icon16x16.png %{buildroot}%{_miconsdir}/%{name}.png
install -m644 -D notebook/images/icon32x32.png %{buildroot}%{_iconsdir}/%{name}.png
install -m644 -D notebook/images/icon32x32.png %{buildroot}%{_datadir}/pixmaps/%{name}.png
install -m644 -D notebook/images/icon48x48.png %{buildroot}%{_liconsdir}/%{name}.png
popd
mkdir -p %{buildroot}%{_datadir}/applications
cat > %{buildroot}%{_datadir}/applications/mandriva-%{name}.desktop << EOF
[Desktop Entry]
Name=Sagemath
Comment=A free open-source mathematics software system
Exec=sage
Icon=%{name}
Terminal=true
Type=Application
Categories=Science;Math;
EOF
########################################################################
%clean
# rm -rf #%#{buildroot}
########################################################################
%files
%defattr(-,root,root)
%dir %{py_platsitedir}/sage
%dir %{py_platsitedir}/sagenb
%{py_platsitedir}/sage/*
%{py_platsitedir}/sagenb/*
%{py_platsitedir}/*.py
%{py_platsitedir}/*.egg-info
%{_datadir}/moin/data/plugin/action/*
%{_datadir}/moin/data/plugin/macro/*
%{_datadir}/moin/data/plugin/parser/*
%{py_puresitedir}/MoinMoin/web/static/htdocs/common/js/jsmath
%dir %{SAGE_ROOT}
%{SAGE_ROOT}/*
%{_bindir}/*
%{_libdir}/*.so
%dir %{_includedir}/csage
%{_includedir}/csage/*
%{_iconsdir}/%{name}.png
%{_liconsdir}/%{name}*.png
%{_miconsdir}/%{name}*.png
%{_datadir}/pixmaps/%{name}.png
%{_datadir}/applications/mandriva-%{name}.desktop
%dir %{_datadir}/texmf/tex/generic/sagetex
%{_datadir}/texmf/tex/generic/sagetex/*
%changelog
* Thu Apr 29 2010 Paulo Andrade <pcpa@mandriva.com.br> 4.4-1mdv2010.1
+ Revision: 540683
- Update to new upstream release sagemath 4.4.
* Tue Apr 20 2010 Paulo Andrade <pcpa@mandriva.com.br> 4.3.5-1mdv2010.1
+ Revision: 536901
- Update to latest upstream release
* Mon Mar 29 2010 Paulo Andrade <pcpa@mandriva.com.br> 4.3.4-2mdv2010.1
+ Revision: 528896
- Update to sagemath 4.3.4
* Fri Mar 19 2010 Paulo Andrade <pcpa@mandriva.com.br> 4.3.3-8mdv2010.1
+ Revision: 525153
+ rebuild (emptylog)
* Mon Mar 15 2010 Paulo Andrade <pcpa@mandriva.com.br> 4.3.3-6mdv2010.1
+ Revision: 520652
- Correct problems in the wiki interface
- Enable sagetex
- As of version 4.3.2 sage can use jinja2 (bugzilla #58121)
* Thu Mar 04 2010 Paulo Andrade <pcpa@mandriva.com.br> 4.3.3-4mdv2010.1
+ Revision: 514355
- Correct problems with maxima gcl backend
* Thu Mar 04 2010 Paulo Andrade <pcpa@mandriva.com.br> 4.3.3-3mdv2010.1
+ Revision: 514043
- Correct hang in maxima interface when using clisp runtime
* Tue Mar 02 2010 Paulo Andrade <pcpa@mandriva.com.br> 4.3.3-2mdv2010.1
+ Revision: 513302
- Correct most remaining doctest failures
* Sat Feb 27 2010 Paulo Andrade <pcpa@mandriva.com.br> 4.3.3-1mdv2010.1
+ Revision: 512178
- Update to sage 4.3.3
- Add sage menu entry and icons
* Wed Feb 17 2010 Paulo Andrade <pcpa@mandriva.com.br> 4.3.2-4mdv2010.1
+ Revision: 507223
+ rebuild (emptylog)
* Sat Feb 13 2010 Funda Wang <fwang@mandriva.org> 4.3.2-3mdv2010.1
+ Revision: 505214
- rebuild
+ Paulo Andrade <pcpa@mandriva.com.br>
- Install cPickle.so and pickle.py from an alternate python build
* Thu Feb 11 2010 Paulo Andrade <pcpa@mandriva.com.br> 4.3.2-1mdv2010.1
+ Revision: 504338
- Update to sagemath 4.3.2.
* Wed Feb 10 2010 Funda Wang <fwang@mandriva.org> 4.3.1-5mdv2010.1
+ Revision: 503731
- rebuild for new gmp
* Fri Feb 05 2010 Paulo Andrade <pcpa@mandriva.com.br> 4.3.1-4mdv2010.1
+ Revision: 501251
- Remove pickle hack related changes
- Rewrite temporary workaround for pickle as a patch
- Correct qepcad doctests and helper to rewrite qepcadrc
- Correct problem if both, pickle_hack and with_check are defined
* Thu Feb 04 2010 Paulo Andrade <pcpa@mandriva.com.br> 4.3.1-2mdv2010.1
+ Revision: 500569
- Remove no longer required _disable_ld_as_needed
- Workaround python issue 7689 by using a custom Pickle interface
- Update for libgmp5
- Reenable LD_PRELOAD of libpolybori to workaround a memory corruption.
- Update to sagemath 4.3.1.
* Tue Jan 05 2010 Paulo Andrade <pcpa@mandriva.com.br> 4.3-1mdv2010.1
+ Revision: 486497
- Add patch to user givaro 3.3.1 instead of sage's default 3.2.12.
- Update to latest upstream release sagemath 4.3.
* Mon Nov 30 2009 Paulo Andrade <pcpa@mandriva.com.br> 4.2.1-2mdv2010.1
+ Revision: 472034
- python-matplotlib is now a build requires
* Thu Nov 26 2009 Paulo Andrade <pcpa@mandriva.com.br> 4.2.1-1mdv2010.1
+ Revision: 470381
- Update to latest upstream release sage 4.2.1.
- Correct upgrade from Mandriva 2010.0 sage 4.1.1 to cooker sage 4.2
* Wed Nov 18 2009 Paulo Andrade <pcpa@mandriva.com.br> 4.2-1mdv2010.1
+ Revision: 467330
- Remove versioned requires
- Correct cell paths in notebook
- Update to sage 4.2.
- Use signed jmol jar files by default.
* Sat Sep 19 2009 Paulo Andrade <pcpa@mandriva.com.br> 4.1.1-6mdv2010.0
+ Revision: 444515
+ rebuild (emptylog)
* Fri Sep 18 2009 Paulo Andrade <pcpa@mandriva.com.br> 4.1.1-5mdv2010.0
+ Revision: 444224
- Use python-mpmpath instead of python-sympy's copy of python-mpath.
- Add dependency on cddlib package and correct cddlib doctects
* Wed Sep 16 2009 Paulo Andrade <pcpa@mandriva.com.br> 4.1.1-4mdv2010.0
+ Revision: 443691
- Use mpmath in sympy (sage 4.1.1 has a separate, duplicated mpmath spkg)
- Requires explicit maxima version due to change in matrix output
* Tue Sep 15 2009 Paulo Andrade <pcpa@mandriva.com.br> 4.1.1-3mdv2010.0
+ Revision: 443211
- correct maxima doctest failures using sage trac #6699 patch
- update requires for macaulay2 and create related extcode directory
* Thu Sep 10 2009 Paulo Andrade <pcpa@mandriva.com.br> 4.1.1-2mdv2010.0
+ Revision: 436210
+ rebuild (emptylog)
* Thu Sep 03 2009 Paulo Andrade <pcpa@mandriva.com.br> 4.1.1-1mdv2010.0
+ Revision: 428854
- Correct problems when compiling pyx and pxd files to native code
- Correct problem in generation of fast static documentation
- Revert change to LD_PRELOAD libntl.so it is still required
- add cliquer-devel to build requires
- disable by default doctest build
- Update to latest upstream release sage 4.1.1
- add (build) requires on ntl version and remove LD_PRELOAD of libntl.so
* Mon Aug 31 2009 Paulo Andrade <pcpa@mandriva.com.br> 4.1-13mdv2010.0
+ Revision: 423102
- require mpfi-devel
- install magma files
- conflict with 3.0.5 packages, not just obsolete
* Fri Aug 28 2009 Paulo Andrade <pcpa@mandriva.com.br> 4.1-12mdv2010.0
+ Revision: 421814
- correct problems with "sage -t" on $SAGE_ROOT/doc
* Wed Aug 26 2009 Paulo Andrade <pcpa@mandriva.com.br> 4.1-11mdv2010.0
+ Revision: 421313
- add optional default option to use python-sqlalchemy shipped in sage tarball
- correct sage/plot/plot3d/list_plot3d.py test failures
- allow the sage package to use its own version of python-networkx
- correct sagedoc to search the proper directory
- Added with_check build conditional
- Added several extra build requires conditional to with_check
- Run 'sage -testall' and add log to package if with_check is defined
- rediff sage_scripts and correct problems in sage {-t,-tp,-testall}
* Fri Aug 21 2009 Paulo Andrade <pcpa@mandriva.com.br> 4.1-10mdv2010.0
+ Revision: 418780
- make the optional lie interface "optional"
* Thu Aug 20 2009 Paulo Andrade <pcpa@mandriva.com.br> 4.1-9mdv2010.0
+ Revision: 418355
- correct issues, and add support for the optional qepcad interface
- use maxima --disable-readline option by default
# this option now also pass "-I" to clisp, if clisp is the lisp used by maxima
# and is expected to correct some issues with sagemath, where it can show
# some random failures
- make lisp optional interface functional
- Add axiom to Requires.
- Make the optional, octave and scilab interfaces functional.
* Thu Aug 13 2009 Paulo Andrade <pcpa@mandriva.com.br> 4.1-8mdv2010.0
+ Revision: 415802
- add upstream patch to correct tachyon output
- enable flintqs and rubiks build
- change latex build requires from textlive-latex to tetex-latex
- remove misleading comments
- Correct dsage with incorrect check of environment and python 2.6 warnings.
* Tue Aug 11 2009 Paulo Andrade <pcpa@mandriva.com.br> 4.1-7mdv2010.0
+ Revision: 414513
- Use a sage, instead of a python instance in notebook's sage0.
- o Add missing requires
o Reorder shell code to untar spkgs
o Build genus2reduction
o Install missing databases
- Correct build of reference documentations.
* Fri Aug 07 2009 Paulo Andrade <pcpa@mandriva.com.br> 4.1-5mdv2010.0
+ Revision: 411013
+ rebuild (emptylog)
* Thu Aug 06 2009 Paulo Andrade <pcpa@mandriva.com.br> 4.1-4mdv2010.0
+ Revision: 410951
- Correct problems binaries generated by sage using cython.
* Wed Aug 05 2009 Paulo Andrade <pcpa@mandriva.com.br> 4.1-3mdv2010.0
+ Revision: 410344
- Add initial infrastructure to make functional the sage wiki interface.
* Tue Jul 21 2009 Paulo Andrade <pcpa@mandriva.com.br> 4.1-2mdv2010.0
+ Revision: 398266
- Update to latest upstream release version 4.1.
* Sat Jun 20 2009 Paulo Andrade <pcpa@mandriva.com.br> 4.0.1-4mdv2010.0
+ Revision: 387428
- Add workaround to use python-pexpect 2.0 and not the distro version.
to get it to work, so, this should be a reasonable solution. But
something weird is going on with "python-pexpect 2.4", an interesting
detail is that it adds a space just after the 80th character, and if
calling the setwinsize() to adjust it to 32767 (maximum value), that
space is not generated.
- o Correct wrong links and missing notebook template files.
o Correct wrong 'find' shell command that would cause some C files to
not be regenerated.
* Fri Jun 19 2009 Paulo Andrade <pcpa@mandriva.com.br> 4.0.1-2mdv2010.0
+ Revision: 387248
+ rebuild (emptylog)
* Thu Jun 18 2009 Paulo Andrade <pcpa@mandriva.com.br> 4.0.1-1mdv2010.0
+ Revision: 387201
- o Create only one package, obsoleting sagemath-doc and sagemath-examples
o Better match upstream filesystem layout
problem is that when executing notebook() cell python code, neither sage,
os, etc are available.
- Update to latest upstream release, sage 4.0.1.
to be rediffed. Also, this new package drops like 90%% of the previous
patches, by using symlinks, and better matching upstream filesystem
layout.
* Mon Jun 15 2009 Paulo Andrade <pcpa@mandriva.com.br> 3.4.2-4mdv2010.0
+ Revision: 386208
- Correct a major problem in the package, that caused sage to not properly
talk with gap, and only having the package functional due to causing a gap
initialization failure due to treating a directory as a gap workspace.
This patch corrects the issue, but required a newer version of the gap
package, with xgap being not loaded by default.
* Thu Jun 11 2009 Paulo Andrade <pcpa@mandriva.com.br> 3.4.2-3mdv2010.0
+ Revision: 385006
- Install jqueryui javascript.
Correct a wrong patch that caused twist to not find the proper javascript
sources (os.path.join() with two absolute pathnames).
* Wed Jun 10 2009 Paulo Andrade <pcpa@mandriva.com.br> 3.4.2-1mdv2010.0
+ Revision: 384601
- Added python-twisted-core to build requires as it is required when
converting *.rst to *.html (or other optional formats).
builds where the previous build requires and requires are installed.
- o Correct build failure due to not finding solaris_fixes.h.
o Correct problems with javascript in the sage notebook due to missing
jquery javascript files.
- o Update to latest upstream release, version 3.4.2.
o Rebase all patches and remove unnecessary or already applied ones.
* Fri May 22 2009 Paulo Andrade <pcpa@mandriva.com.br> 3.2.3-1mdv2010.0
+ Revision: 378597
- Correct polybori location and add extra missing build requires.
- Correct a crash due to incorrect search for libsingular.so, and also
modify %%{_bindir}/sage to set singular environment.
Update sagemath code to match symbols renamed in libm4ri.
- Update to install most sage scripts. Scripts not installed are build
scripts (only prebuilt, system packages are used) and os specific ones.
- Add sage_scripts and correct several build problems.
functional.
- Update to ensure the same destination base directory is used for
python files installed "by hand" and those installed by the distutils
python module.
- Initial import of sage version 3.2.3.
http://www.sagemath.org
A free open-source mathematics software system
available, also, it won't build properly. Just adding to the repository.
- sagemath
distrib
>
Mandriva
>
current
>
i586
>
media
>
contrib-release-src
>
by-pkgid
>
00815a9fc0aa3cff159e1d13a67ec81a
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files
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17
